File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/d3fccc5387e96cf242845a290fceb2/.command.log
Size
1019 bytes
Task
DAQ:CONTROL_METRICS:GERMLINE_METRICS:GERMLINE_CNV_METRICS (germline_control_2)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/control_truth/na12878/na12878_germline_cnv_dels.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/d3fccc5387e96cf242845a290fceb2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/d3fccc5387e96cf242845a290fceb2/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/eedcfc71192cef9e004e9c0cb3dd8a/germline_control_2.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/eedcfc71192cef9e004e9c0cb3dd8a/germline_control_2.vcf.gz
==> STAGING COMPLETE (5 inputs)

[E::bcf_hdr_parse_line] Could not parse the header line: "##ABNORMAL_PLOIDY_CHR=<chr1:0,chr12:0,chr14:0,chr5:0,chr6:0,chr7:4>"
[E::bcf_hdr_parse_line] Could not parse the header line: "##ABNORMAL_PLOIDY_CHR=<chr1:0,chr12:0,chr14:0,chr5:0,chr6:0,chr7:4>"
[E::bcf_hdr_parse_line] Could not parse the header line: "##ABNORMAL_PLOIDY_CHR=<chr1:0,chr12:0,chr14:0,chr5:0,chr6:0,chr7:4>"