cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_BL --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_1.tnseq.vcf.gz --contamination negative_somatic_control_1.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_1.tnseq.segments --orientation_priors negative_somatic_control_1.tnseq.orientation_data.tsv negative_somatic_control_1.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:202000001, elapsed 0.1s, est remaining 1.0s, peak mem 220MB, user 0.2s, sys 2.2s, output queue size 147
progress 10% @chr1:182000001, elapsed 0.1s, est remaining 0.8s, peak mem 220MB, user 0.5s, sys 5.0s, output queue size 296
progress 15% @chr3:30000001, elapsed 0.1s, est remaining 0.7s, peak mem 220MB, user 0.9s, sys 7.4s, output queue size 187
progress 20% @chr3:141000001, elapsed 0.2s, est remaining 0.6s, peak mem 220MB, user 1.2s, sys 9.8s, output queue size 349
progress 25% @chr4:106000001, elapsed 0.2s, est remaining 0.6s, peak mem 220MB, user 1.5s, sys 12.5s, output queue size 510
progress 30% @chr4:189000001, elapsed 0.2s, est remaining 0.5s, peak mem 220MB, user 1.8s, sys 14.9s, output queue size 671
progress 35% @chr6:58000001, elapsed 0.3s, est remaining 0.5s, peak mem 220MB, user 1.9s, sys 17.3s, output queue size 832
progress 40% @chr7:71000001, elapsed 0.3s, est remaining 0.5s, peak mem 220MB, user 2.3s, sys 19.7s, output queue size 993
progress 45% @chr8:89000001, elapsed 0.3s, est remaining 0.4s, peak mem 220MB, user 2.6s, sys 22.4s, output queue size 1155
progress 50% @chr9:102000001, elapsed 0.4s, est remaining 0.4s, peak mem 220MB, user 2.8s, sys 25.0s, output queue size 1317
progress 55% @chr10:119000001, elapsed 0.4s, est remaining 0.3s, peak mem 220MB, user 3.1s, sys 27.6s, output queue size 1478
progress 60% @chr11:112000001, elapsed 0.5s, est remaining 0.3s, peak mem 221MB, user 3.4s, sys 29.9s, output queue size 1640
progress 65% @chr13:49000001, elapsed 0.5s, est remaining 0.3s, peak mem 221MB, user 3.6s, sys 31.8s, output queue size 1802
progress 70% @chr14:49000001, elapsed 0.6s, est remaining 0.2s, peak mem 221MB, user 4.1s, sys 34.1s, output queue size 1964
progress 75% @chr16:45000001, elapsed 0.6s, est remaining 0.2s, peak mem 221MB, user 4.2s, sys 36.5s, output queue size 2125
progress 80% @chr18:20000001, elapsed 0.6s, est remaining 0.2s, peak mem 221MB, user 4.5s, sys 38.9s, output queue size 2287
progress 85% @chr19:47000001, elapsed 0.7s, est remaining 0.1s, peak mem 221MB, user 4.8s, sys 41.1s, output queue size 2450
progress 90% @chr22:1000001, elapsed 0.7s, est remaining 0.1s, peak mem 221MB, user 5.2s, sys 43.3s, output queue size 2611
progress 95% @chr22_KI270736v1_random:1, elapsed 0.8s, est remaining 0.0s, peak mem 221MB, user 5.5s, sys 45.8s, output queue size 2839
progress 100% @HLA-DRB1*12:01:01:1, elapsed 0.9s, est remaining 0.0s, peak mem 223MB, user 5.7s, sys 53.6s, output queue size 64
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
signature: 00050657
features: bfebfbff 7ffefbff
extended: d39ff7eb 00000818
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) Platinum 8259CL CPU @ 2.50GHz
threads: 96 max 96
algo: TNfilter
license: sentieon:TNhaplotyper=96
input file size: 46614
output file size: 40483
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 408 calls 0.003 user 0.000 sys 0.017 real
"predict_filter": 136 calls 0.019 user 0.007 sys 0.033 real
advance: 3219322 calls 0.802 user 21.212 sys 25.899 real
done: 1 calls 0.001 user 0.000 sys 0.004 real
execute: 1 calls 0.000 user 0.010 sys 1.011 real
fetch_ref: 384 calls 0.002 user 0.056 sys 0.225 real
idle: 19769 calls 0.404 user 0.274 sys 139.098 real
init: 1 calls 0.266 user 0.077 sys 0.421 real
overall: 233984000 mem 6.991 user 56.043 sys 2.457 real