File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/e26ec91d589c364710f0aaa72e16d3/.command.log
Size
61.6 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr9_110971973-110972217.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/e26ec91d589c364710f0aaa72e16d3/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/61734391e4f47c8b44be28e79e0683/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/61734391e4f47c8b44be28e79e0683/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/e26ec91d589c364710f0aaa72e16d3/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-05T13:59:48.663975Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T13:59:48.673954Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T13:59:48.673987Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T13:59:48.673994Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T13:59:48.673999Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX9Aey4p'
[2026-06-05T13:59:48.674003Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T13:59:48.674008Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T13:59:48.674012Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T13:59:48.674016Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-05T13:59:48.674019Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T13:59:48.674023Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T13:59:48.674027Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T13:59:48.674030Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T13:59:48.674034Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T13:59:48.675060Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T13:59:48.675119Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T13:59:48.680830Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T13:59:48.681497Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T13:59:48.681767Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T13:59:48.681953Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T13:59:48.682118Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.683252Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T13:59:48.683737Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.683909Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.684098Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.684486Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.684648Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.686395Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.686513Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T13:59:48.686929Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.687077Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.687139Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.687259Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.687322Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.687434Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.687499Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.687607Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.687671Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.687781Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.687842Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.687982Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.688306Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.688620Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.688688Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.688796Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.688858Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.689268Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.689333Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.689443Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.689509Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.689686Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.689977Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.690100Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.690166Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.690275Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.690337Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.690447Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.690512Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.690625Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.690688Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.690829Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.690890Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.691050Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.691452Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.691569Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.691630Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.691750Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.691815Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.691981Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.692051Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.692160Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.692227Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.692334Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.692395Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.692558Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.692978Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.693089Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.693152Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.693259Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.693322Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.693432Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.693490Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.693603Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.693665Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.709289Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.709543Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.709612Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.709766Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.709839Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.709925Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.709994Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.710100Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.710166Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T13:59:48.710213Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T13:59:48.718273Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:48.718843Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:48.720312Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:48.720788Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:48.721220Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-05T13:59:48.721797Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:48.722443Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:48.723094Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:48.724003Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:48.727436Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-05T13:59:48.732305Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T13:59:48.733517Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-05T13:59:48.737552Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-05T13:59:48.739673Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-05T13:59:48.740505Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-05T13:59:48.745365Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-05T13:59:48.746664Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-05T13:59:48.844038Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:48.844125Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:48.844159Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:48.844897Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:48.845173Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:48.845498Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:48.846338Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:48.850699Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T13:59:48.852196Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-05T13:59:48.854657Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:48.855099Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-05T13:59:48.858022Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-05T13:59:48.918900Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:48.919676Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:48.929395Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-05T13:59:49.385629Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.385742Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.386723Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.387056Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.390492Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-05T13:59:49.392170Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-05T13:59:49.451611Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.452390Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.455893Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-05T13:59:49.517262Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.518020Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.520880Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-05T13:59:49.582276Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.582360Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.583008Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.583667Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.588085Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-05T13:59:49.800162Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.800943Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.804357Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-05T13:59:49.865587Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.865702Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.866440Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.867105Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.871395Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-05T13:59:49.872531Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-05T13:59:49.934314Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.934443Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.935135Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.937399Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:49.939811Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-05T13:59:49.941607Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T13:59:50.004350Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.004462Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.004511Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.005188Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.005965Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.008589Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.010386Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-05T13:59:50.011784Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-05T13:59:50.014093Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-05T13:59:50.043466Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.044159Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.047114Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-05T13:59:50.108488Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.108588Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.108644Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.109279Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.109994Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.110665Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.114843Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-05T13:59:50.116469Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-05T13:59:50.117683Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-05T13:59:50.677244Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.677349Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.677936Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.678746Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.682577Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-05T13:59:50.683699Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-05T13:59:50.745542Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.745651Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.746275Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.746924Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.750897Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-05T13:59:50.752022Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-05T13:59:50.912719Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.913409Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.916709Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-05T13:59:50.978257Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.978915Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-05T13:59:50.982252Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-05T13:59:51.043340Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.044011Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.047507Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-05T13:59:51.108348Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.108968Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.112381Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-05T13:59:51.173399Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.174066Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.178526Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-05T13:59:51.239985Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.240682Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.244571Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-05T13:59:51.305375Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.306044Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.310272Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-05T13:59:51.316398Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-05T13:59:51.322917Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.323557Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.327714Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-05T13:59:51.356547Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.356650Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.357267Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.358167Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.362873Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-05T13:59:51.364559Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-05T13:59:51.425379Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.425491Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.426313Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.427280Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.430586Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.431306Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-05T13:59:51.431508Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.433751Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.434455Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.434993Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-05T13:59:51.438737Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-05T13:59:51.440410Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-05T13:59:51.499739Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.499842Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.500399Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.501243Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.505797Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-05T13:59:51.543689Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-05T13:59:51.566717Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.566821Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.567385Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.568353Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.573527Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-05T13:59:51.574357Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-05T13:59:51.633992Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.634616Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.638733Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-05T13:59:51.699917Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.700508Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.705319Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-05T13:59:51.816672Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.817285Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.821258Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-05T13:59:51.882869Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.947202Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.947776Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.951974Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-05T13:59:51.964620Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.965213Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-05T13:59:51.968934Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-05T13:59:51.998044Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.005841Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.120200Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.120752Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.123980Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-05T13:59:52.185493Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.299867Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.300370Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.303745Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-05T13:59:52.365143Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.780031Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.780544Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.784672Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-05T13:59:52.845506Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.959869Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.960408Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-05T13:59:52.964258Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-05T13:59:53.025508Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.340422Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.340961Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.344797Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-05T13:59:53.405584Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.405906Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.406103Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.406980Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.407946Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.412884Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T13:59:53.415201Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T13:59:53.416228Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T13:59:53.443406Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.443778Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.447258Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.447334Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.447754Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T13:59:53.447959Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.451812Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T13:59:53.512720Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.512828Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.513107Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T13:59:53.516327Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T13:59:53.577933Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T13:59:54.344050Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T13:59:59.220005Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T13:59:59.220005Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] 
[2026-06-05T13:59:59.220005Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T13:59:59.220068Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] 
[2026-06-05T13:59:59.220077Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T13:59:59.220083Z] [nf-b3e26ec91d589c364710f0aaa72e16d3-18620-5qxvc] [656_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec