File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/64606b6627978afc587230490b9d0f/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr19_15162349-15162662.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXzLls0v/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXzLls0v/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXzLls0v/chr19_15162349-15162662.bed.gz.tbi
[2026-06-05T14:00:02.780863Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T14:00:02.781745Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T14:00:02.781758Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T14:00:02.781764Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T14:00:02.781769Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXzLls0v'
[2026-06-05T14:00:02.781773Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T14:00:02.781779Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T14:00:02.781783Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T14:00:02.781786Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-05T14:00:02.781790Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T14:00:02.781794Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T14:00:02.781798Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T14:00:02.781801Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T14:00:02.781806Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T14:00:02.782350Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T14:00:02.782472Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T14:00:02.788690Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T14:00:02.789564Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T14:00:02.789861Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T14:00:02.790064Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T14:00:02.790322Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.790884Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.791356Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.791548Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.791788Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.792697Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.793073Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.795027Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.795324Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T14:00:02.795774Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.795965Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.796037Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.796156Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.796221Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.796337Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.796404Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.796521Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.796590Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.796724Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.796934Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.797635Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.797913Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.798035Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.798105Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.798219Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.798284Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.798457Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.798532Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.798649Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.798721Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.798834Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.798972Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.799347Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.799744Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.800018Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.800495Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.800878Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.800945Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.801058Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.801130Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.801244Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.801306Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.801440Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.801509Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.802398Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.802794Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.802931Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.803064Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.803181Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.803248Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.803361Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.803446Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.803562Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.803628Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.803741Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.803956Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.804610Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.804683Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.804796Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.804860Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.804978Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.805039Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.805151Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.805215Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.805323Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.805393Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.821273Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.821762Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.821842Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.822030Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.822106Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.822210Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.822281Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.822408Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.823953Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T14:00:02.824618Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T14:00:02.825375Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.826249Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.826811Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.827436Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.828362Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.829287Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.830541Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.831583Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.833888Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.837928Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-05T14:00:02.841716Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T14:00:02.843279Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T14:00:02.846240Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T14:00:02.849237Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-05T14:00:02.855387Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-05T14:00:02.856107Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-05T14:00:02.858251Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-05T14:00:02.952468Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.952571Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.953467Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.954044Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:02.959185Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-05T14:00:02.960043Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-05T14:00:03.822412Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.823388Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:03.827054Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T14:00:04.189316Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.190119Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.193888Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-05T14:00:04.254772Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.255609Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.259107Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T14:00:04.420601Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.421454Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.425743Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-05T14:00:04.686862Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.687788Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.690837Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T14:00:04.752114Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.753004Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.756462Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-05T14:00:04.918246Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.918353Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.919128Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.919639Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.923589Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-05T14:00:04.924320Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T14:00:04.984498Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.984626Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.985372Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.985976Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:04.989832Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T14:00:04.990942Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-05T14:00:05.050921Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.051027Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.051789Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.052180Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.056076Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T14:00:05.057635Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-05T14:00:05.060454Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.061171Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.064822Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-05T14:00:05.125747Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.126564Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.129719Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-05T14:00:05.191018Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.192116Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.196010Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T14:00:05.808579Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.809382Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-05T14:00:05.813273Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-05T14:00:06.375602Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.376407Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.380129Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T14:00:06.691875Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.692763Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.696744Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T14:00:06.858122Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.858235Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.858282Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.858989Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.859347Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.859647Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.865714Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-05T14:00:06.868864Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-05T14:00:06.896690Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-05T14:00:06.925248Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.925349Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.926044Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.926644Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.930064Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T14:00:06.931377Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-05T14:00:06.959012Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.959738Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.962538Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T14:00:06.967619Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.968277Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:06.971413Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T14:00:07.000337Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.001034Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.004538Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-05T14:00:07.005024Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.005531Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.008243Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T14:00:07.922990Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.923093Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.923696Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.924088Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.927842Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-05T14:00:07.928891Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-05T14:00:07.989022Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.989748Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:07.993050Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-05T14:00:08.054131Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.054807Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.058095Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-05T14:00:08.119206Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.119938Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.123268Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T14:00:08.184413Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.185052Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.188283Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T14:00:08.249577Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.250264Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.253749Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-05T14:00:08.415135Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.415789Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.419101Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-05T14:00:08.480147Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.480777Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.484405Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-05T14:00:08.545315Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.545967Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.549917Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T14:00:08.610573Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.611234Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.614919Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T14:00:08.675930Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.676576Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.680050Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-05T14:00:08.741087Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.741744Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.745340Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-05T14:00:08.806139Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.806768Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.810624Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-05T14:00:08.871247Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.871891Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.875005Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-05T14:00:08.936562Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.937187Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-05T14:00:08.940314Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-05T14:00:09.001695Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.002295Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.005347Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-05T14:00:09.117265Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.117908Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.121103Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-05T14:00:09.182682Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.183265Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.186230Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T14:00:09.215509Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.216101Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.218598Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.219152Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.220812Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T14:00:09.222060Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T14:00:09.283569Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.283674Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.283710Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.284208Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.284591Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.288643Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-05T14:00:09.289572Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T14:00:09.349054Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.349135Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.563805Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.564338Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.567268Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-05T14:00:09.596717Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.597232Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.600290Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T14:00:09.601098Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.665069Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.665153Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.665534Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.668712Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-05T14:00:09.729839Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.944214Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.944680Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-05T14:00:09.947612Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-05T14:00:10.008881Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.624263Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.624755Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.627803Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-05T14:00:10.688971Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.689226Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.689363Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.689779Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.690466Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.694626Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T14:00:10.695890Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T14:00:10.696972Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T14:00:10.724561Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.724633Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.724653Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.724850Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.725302Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.727925Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T14:00:10.728867Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T14:00:10.757420Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.757500Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.757682Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T14:00:10.760142Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T14:00:10.789584Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T14:00:13.410189Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T14:00:21.670428Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T14:00:21.670428Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] 
[2026-06-05T14:00:21.670428Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T14:00:21.670495Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] 
[2026-06-05T14:00:21.670503Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T14:00:21.670511Z] [nf-1c64606b6627978afc587230490b9d0f-0f67d-r75wg] [613_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec