Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/2a76610d309579f5160531f647088a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/2a76610d309579f5160531f647088a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/7b21e6b3d5296dfad38952efcc4e3e/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/2a76610d309579f5160531f647088a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/6439fb613c0f9a524a49d9a60cbfba/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/6439fb613c0f9a524a49d9a60cbfba/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-qrhq_y6a because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 14:04:53,644 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 14:04:54,539 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 14:04:54,713 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 14:04:55,819 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 14:04:55,889 - cnv_pipe.batch.run_model - INFO - Processing cluster 1063 with 190 probes
2026-06-05 14:04:56,268 - cnv_pipe.batch.run_model.cluster1063 - INFO - Child process started for cluster 1063 with 190 probes
2026-06-05 14:05:55,280 - cnv_pipe.batch.run_model.cluster1063 - INFO - Child process finished cluster 1063. Wrote cluster_1063_samples.csv and cluster_1063_params.csv
2026-06-05 14:05:55,281 - cnv_pipe.batch.run_model - INFO - Cluster 1063 finished in 59.39 seconds. Status: SUCCESS