[ { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_abnormal_ploidy", "qc_value": "false" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_abnormal_ploidy_chromosomes", "qc_value": "NONE" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_del_dup_pass_ratio", "qc_value": "5.2000" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_del_pass_count", "qc_value": "52" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_dup_pass_count", "qc_value": "10" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_landmark_del_missed", "qc_value": "NONE" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_landmark_del_recovered_count", "qc_value": "2" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_landmark_del_truth_total", "qc_value": "2" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_qc_failed", "qc_value": "false" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_ugt2b17_del_cn", "qc_value": "0" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_ugt2b17_del_filter", "qc_value": "PASS" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_ugt2b28_del_cn", "qc_value": "1" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_ugt2b28_del_filter", "qc_value": "PASS" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "hla", "qc_metric_name": "germline_control_hla_alleles_recovered_count", "qc_value": "6" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "hla", "qc_metric_name": "germline_control_hla_alleles_truth_total", "qc_value": "6" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "germline_control_snv_indel_giab_missed_variants", "qc_value": "NONE" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "germline_control_snv_indel_giab_recovered_count", "qc_value": "12" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "germline_control_snv_indel_giab_truth_total", "qc_value": "12" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "germline_control_snv_indel_indel_count", "qc_value": "1369" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "germline_control_snv_indel_snv_count", "qc_value": "25673" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_abnormal_ploidy", "qc_value": "false" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_abnormal_ploidy_chromosomes", "qc_value": "NONE" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_del_dup_pass_ratio", "qc_value": "4.4167" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_del_pass_count", "qc_value": "53" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_dup_pass_count", "qc_value": "12" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_landmark_del_missed", "qc_value": "NONE" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_landmark_del_recovered_count", "qc_value": "2" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_landmark_del_truth_total", "qc_value": "2" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_qc_failed", "qc_value": "false" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_ugt2b17_del_cn", "qc_value": "0" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_ugt2b17_del_filter", "qc_value": "PASS" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_ugt2b28_del_cn", "qc_value": "1" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_ugt2b28_del_filter", "qc_value": "PASS" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "hla", "qc_metric_name": "germline_control_hla_alleles_recovered_count", "qc_value": "6" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "hla", "qc_metric_name": "germline_control_hla_alleles_truth_total", "qc_value": "6" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "germline_control_snv_indel_giab_missed_variants", "qc_value": "NONE" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "germline_control_snv_indel_giab_recovered_count", "qc_value": "12" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "germline_control_snv_indel_giab_truth_total", "qc_value": "12" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "germline_control_snv_indel_indel_count", "qc_value": "1365" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "germline_control_snv_indel_snv_count", "qc_value": "25704" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_abnormal_ploidy", "qc_value": "false" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_abnormal_ploidy_chromosomes", "qc_value": "NONE" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_del_dup_pass_ratio", "qc_value": "5.5556" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_del_pass_count", "qc_value": "50" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_dup_pass_count", "qc_value": "9" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_landmark_del_missed", "qc_value": "NONE" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_landmark_del_recovered_count", "qc_value": "2" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_landmark_del_truth_total", "qc_value": "2" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_qc_failed", "qc_value": "false" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_ugt2b17_del_cn", "qc_value": "0" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_ugt2b17_del_filter", "qc_value": "PASS" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_ugt2b28_del_cn", "qc_value": "1" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_ugt2b28_del_filter", "qc_value": "PASS" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "hla", "qc_metric_name": "germline_control_hla_alleles_recovered_count", "qc_value": "6" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "hla", "qc_metric_name": "germline_control_hla_alleles_truth_total", "qc_value": "6" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "germline_control_snv_indel_giab_missed_variants", "qc_value": "NONE" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "germline_control_snv_indel_giab_recovered_count", "qc_value": "12" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "germline_control_snv_indel_giab_truth_total", "qc_value": "12" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "germline_control_snv_indel_indel_count", "qc_value": "1366" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "germline_control_snv_indel_snv_count", "qc_value": "25633" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_abnormal_ploidy", "qc_value": "false" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_abnormal_ploidy_chromosomes", "qc_value": "NONE" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_del_dup_pass_ratio", "qc_value": "5.3333" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_del_pass_count", "qc_value": "48" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_dup_pass_count", "qc_value": "9" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_landmark_del_missed", "qc_value": "NONE" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_landmark_del_recovered_count", "qc_value": "2" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_landmark_del_truth_total", "qc_value": "2" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_qc_failed", "qc_value": "false" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_ugt2b17_del_cn", "qc_value": "0" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_ugt2b17_del_filter", "qc_value": "PASS" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_ugt2b28_del_cn", "qc_value": "1" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "germline_control_cnv_ugt2b28_del_filter", "qc_value": "PASS" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "hla", "qc_metric_name": "germline_control_hla_alleles_recovered_count", "qc_value": "6" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "hla", "qc_metric_name": "germline_control_hla_alleles_truth_total", "qc_value": "6" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "germline_control_snv_indel_giab_missed_variants", "qc_value": "NONE" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "germline_control_snv_indel_giab_recovered_count", "qc_value": "12" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "germline_control_snv_indel_giab_truth_total", "qc_value": "12" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "germline_control_snv_indel_indel_count", "qc_value": "1347" }, { "control_type": "germline", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "germline_control_snv_indel_snv_count", "qc_value": "25652" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "negative_somatic_control_cnv_segment_count", "qc_value": "3" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "negative_somatic_control_mimsi_lci", "qc_value": "0.02622210296849425" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "negative_somatic_control_mimsi_max_msi_score", "qc_value": "0.041221123188734055" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "negative_somatic_control_mimsi_mean_msi_score", "qc_value": "0.030888851545751096" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "negative_somatic_control_mimsi_min_msi_score", "qc_value": "0.019855141639709473" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "negative_somatic_control_mimsi_msi_status", "qc_value": "MSS" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "negative_somatic_control_mimsi_uci", "qc_value": "0.03555560012300794" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "msi", "qc_metric_name": "negative_somatic_control_msi_total_sites", "qc_value": "178" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "msi", "qc_metric_name": "negative_somatic_control_msi_unstable_pct", "qc_value": "23.03" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "msi", "qc_metric_name": "negative_somatic_control_msi_unstable_sites", "qc_value": "41" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "negative_somatic_control_snv_indel_indel_count", "qc_value": "5" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "negative_somatic_control_snv_indel_snv_count", "qc_value": "1" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "tmb", "qc_metric_name": "negative_somatic_control_tmb_effective_coding_region_size", "qc_value": "34.15" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "tmb", "qc_metric_name": "negative_somatic_control_tmb_non_synonymous_count", "qc_value": "0" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "tmb", "qc_metric_name": "negative_somatic_control_tmb_score", "qc_value": "0.0" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "negative_somatic_control_cnv_segment_count", "qc_value": "5" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "negative_somatic_control_mimsi_lci", "qc_value": "0.024533608174867834" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "negative_somatic_control_mimsi_max_msi_score", "qc_value": "0.04560926556587219" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "negative_somatic_control_mimsi_mean_msi_score", "qc_value": "0.03030748274177313" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "negative_somatic_control_mimsi_min_msi_score", "qc_value": "0.019481247290968895" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "negative_somatic_control_mimsi_msi_status", "qc_value": "MSS" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "negative_somatic_control_mimsi_uci", "qc_value": "0.036081357308678425" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "msi", "qc_metric_name": "negative_somatic_control_msi_total_sites", "qc_value": "178" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "msi", "qc_metric_name": "negative_somatic_control_msi_unstable_pct", "qc_value": "22.47" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "msi", "qc_metric_name": "negative_somatic_control_msi_unstable_sites", "qc_value": "40" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "negative_somatic_control_snv_indel_indel_count", "qc_value": "2" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "negative_somatic_control_snv_indel_snv_count", "qc_value": "0" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "tmb", "qc_metric_name": "negative_somatic_control_tmb_effective_coding_region_size", "qc_value": "34.15" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "tmb", "qc_metric_name": "negative_somatic_control_tmb_non_synonymous_count", "qc_value": "0" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "tmb", "qc_metric_name": "negative_somatic_control_tmb_score", "qc_value": "0.0" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "negative_somatic_control_cnv_segment_count", "qc_value": "7" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "negative_somatic_control_mimsi_lci", "qc_value": "0.025747463799561318" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "negative_somatic_control_mimsi_max_msi_score", "qc_value": "0.07450731098651886" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "negative_somatic_control_mimsi_mean_msi_score", "qc_value": "0.03817997947335243" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "negative_somatic_control_mimsi_min_msi_score", "qc_value": "0.01320294477045536" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "negative_somatic_control_mimsi_msi_status", "qc_value": "MSS" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "negative_somatic_control_mimsi_uci", "qc_value": "0.05061249514714354" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "msi", "qc_metric_name": "negative_somatic_control_msi_total_sites", "qc_value": "177" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "msi", "qc_metric_name": "negative_somatic_control_msi_unstable_pct", "qc_value": "14.12" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "msi", "qc_metric_name": "negative_somatic_control_msi_unstable_sites", "qc_value": "25" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "negative_somatic_control_snv_indel_indel_count", "qc_value": "3" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "negative_somatic_control_snv_indel_snv_count", "qc_value": "2" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "tmb", "qc_metric_name": "negative_somatic_control_tmb_effective_coding_region_size", "qc_value": "34.15" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "tmb", "qc_metric_name": "negative_somatic_control_tmb_non_synonymous_count", "qc_value": "0" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "tmb", "qc_metric_name": "negative_somatic_control_tmb_score", "qc_value": "0.0" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "negative_somatic_control_cnv_segment_count", "qc_value": "14" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "negative_somatic_control_mimsi_lci", "qc_value": "0.05632864295722269" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "negative_somatic_control_mimsi_max_msi_score", "qc_value": "0.10977954417467117" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "negative_somatic_control_mimsi_mean_msi_score", "qc_value": "0.07018488310277463" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "negative_somatic_control_mimsi_min_msi_score", "qc_value": "0.04696954786777496" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "negative_somatic_control_mimsi_msi_status", "qc_value": "MSS" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "negative_somatic_control_mimsi_uci", "qc_value": "0.08404112324832656" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "msi", "qc_metric_name": "negative_somatic_control_msi_total_sites", "qc_value": "178" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "msi", "qc_metric_name": "negative_somatic_control_msi_unstable_pct", "qc_value": "20.22" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "msi", "qc_metric_name": "negative_somatic_control_msi_unstable_sites", "qc_value": "36" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "negative_somatic_control_snv_indel_indel_count", "qc_value": "8" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "negative_somatic_control_snv_indel_snv_count", "qc_value": "2" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "tmb", "qc_metric_name": "negative_somatic_control_tmb_effective_coding_region_size", "qc_value": "34.15" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "tmb", "qc_metric_name": "negative_somatic_control_tmb_non_synonymous_count", "qc_value": "0" }, { "control_type": "negative_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "tmb", "qc_metric_name": "negative_somatic_control_tmb_score", "qc_value": "0.0" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "positive_somatic_control_cnv_amp_missed", "qc_value": "MYCN;MET" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "positive_somatic_control_cnv_amp_recovered_copy_numbers", "qc_value": "NONE" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "positive_somatic_control_cnv_amp_recovered_count", "qc_value": "0" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "positive_somatic_control_cnv_amp_truth_total", "qc_value": "2" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "positive_somatic_control_cnv_segment_count", "qc_value": "3" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "positive_somatic_control_mimsi_lci", "qc_value": "0.026449470154683713" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "positive_somatic_control_mimsi_max_msi_score", "qc_value": "0.046199601143598557" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "positive_somatic_control_mimsi_mean_msi_score", "qc_value": "0.03298479374498129" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "positive_somatic_control_mimsi_min_msi_score", "qc_value": "0.018430830910801888" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "positive_somatic_control_mimsi_msi_status", "qc_value": "MSS" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "positive_somatic_control_mimsi_uci", "qc_value": "0.03952011733527887" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "msi", "qc_metric_name": "positive_somatic_control_msi_total_sites", "qc_value": "178" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "msi", "qc_metric_name": "positive_somatic_control_msi_unstable_pct", "qc_value": "23.03" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "msi", "qc_metric_name": "positive_somatic_control_msi_unstable_sites", "qc_value": "41" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "positive_somatic_control_snv_indel_coa_missed_variants", "qc_value": "163343;177678;13983;376002;13655" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "positive_somatic_control_snv_indel_coa_recovered_count", "qc_value": "0" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "positive_somatic_control_snv_indel_coa_truth_total", "qc_value": "5" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "positive_somatic_control_snv_indel_indel_count", "qc_value": "5" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "positive_somatic_control_snv_indel_snv_count", "qc_value": "1" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "tmb", "qc_metric_name": "positive_somatic_control_tmb_effective_coding_region_size", "qc_value": "34.15" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "tmb", "qc_metric_name": "positive_somatic_control_tmb_non_synonymous_count", "qc_value": "0" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0001_B23KGCJLT4_1", "variant_type": "tmb", "qc_metric_name": "positive_somatic_control_tmb_score", "qc_value": "0.0" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "positive_somatic_control_cnv_amp_missed", "qc_value": "MYCN;MET" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "positive_somatic_control_cnv_amp_recovered_copy_numbers", "qc_value": "NONE" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "positive_somatic_control_cnv_amp_recovered_count", "qc_value": "0" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "positive_somatic_control_cnv_amp_truth_total", "qc_value": "2" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "positive_somatic_control_cnv_segment_count", "qc_value": "5" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "positive_somatic_control_mimsi_lci", "qc_value": "0.01950270306487239" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "positive_somatic_control_mimsi_max_msi_score", "qc_value": "0.05042268708348274" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "positive_somatic_control_mimsi_mean_msi_score", "qc_value": "0.027736567240208388" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "positive_somatic_control_mimsi_min_msi_score", "qc_value": "0.014864913187921047" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "positive_somatic_control_mimsi_msi_status", "qc_value": "MSS" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "positive_somatic_control_mimsi_uci", "qc_value": "0.03597043141554439" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "msi", "qc_metric_name": "positive_somatic_control_msi_total_sites", "qc_value": "178" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "msi", "qc_metric_name": "positive_somatic_control_msi_unstable_pct", "qc_value": "22.47" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "msi", "qc_metric_name": "positive_somatic_control_msi_unstable_sites", "qc_value": "40" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "positive_somatic_control_snv_indel_coa_missed_variants", "qc_value": "13983;376002;13655;163343;177678" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "positive_somatic_control_snv_indel_coa_recovered_count", "qc_value": "0" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "positive_somatic_control_snv_indel_coa_truth_total", "qc_value": "5" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "positive_somatic_control_snv_indel_indel_count", "qc_value": "2" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "positive_somatic_control_snv_indel_snv_count", "qc_value": "0" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "tmb", "qc_metric_name": "positive_somatic_control_tmb_effective_coding_region_size", "qc_value": "34.15" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "tmb", "qc_metric_name": "positive_somatic_control_tmb_non_synonymous_count", "qc_value": "0" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0002_B23KGCJLT4_1", "variant_type": "tmb", "qc_metric_name": "positive_somatic_control_tmb_score", "qc_value": "0.0" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "positive_somatic_control_cnv_amp_missed", "qc_value": "MYCN;MET" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "positive_somatic_control_cnv_amp_recovered_copy_numbers", "qc_value": "NONE" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "positive_somatic_control_cnv_amp_recovered_count", "qc_value": "0" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "positive_somatic_control_cnv_amp_truth_total", "qc_value": "2" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "positive_somatic_control_cnv_segment_count", "qc_value": "7" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "positive_somatic_control_mimsi_lci", "qc_value": "0.03246478471634626" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "positive_somatic_control_mimsi_max_msi_score", "qc_value": "0.07176382094621658" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "positive_somatic_control_mimsi_mean_msi_score", "qc_value": "0.043101522140204906" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "positive_somatic_control_mimsi_min_msi_score", "qc_value": "0.021567203104496002" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "positive_somatic_control_mimsi_msi_status", "qc_value": "MSS" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "positive_somatic_control_mimsi_uci", "qc_value": "0.053738259564063556" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "msi", "qc_metric_name": "positive_somatic_control_msi_total_sites", "qc_value": "177" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "msi", "qc_metric_name": "positive_somatic_control_msi_unstable_pct", "qc_value": "14.12" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "msi", "qc_metric_name": "positive_somatic_control_msi_unstable_sites", "qc_value": "25" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "positive_somatic_control_snv_indel_coa_missed_variants", "qc_value": "13655;13983;163343;177678;376002" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "positive_somatic_control_snv_indel_coa_recovered_count", "qc_value": "0" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "positive_somatic_control_snv_indel_coa_truth_total", "qc_value": "5" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "positive_somatic_control_snv_indel_indel_count", "qc_value": "3" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "positive_somatic_control_snv_indel_snv_count", "qc_value": "2" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "tmb", "qc_metric_name": "positive_somatic_control_tmb_effective_coding_region_size", "qc_value": "34.15" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "tmb", "qc_metric_name": "positive_somatic_control_tmb_non_synonymous_count", "qc_value": "0" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0003_B23KGCJLT4_1", "variant_type": "tmb", "qc_metric_name": "positive_somatic_control_tmb_score", "qc_value": "0.0" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "positive_somatic_control_cnv_amp_missed", "qc_value": "MYCN;MET" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "positive_somatic_control_cnv_amp_recovered_copy_numbers", "qc_value": "NONE" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "positive_somatic_control_cnv_amp_recovered_count", "qc_value": "0" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "positive_somatic_control_cnv_amp_truth_total", "qc_value": "2" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "cnv", "qc_metric_name": "positive_somatic_control_cnv_segment_count", "qc_value": "14" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "positive_somatic_control_mimsi_lci", "qc_value": "0.05044051533901929" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "positive_somatic_control_mimsi_max_msi_score", "qc_value": "0.10746132582426071" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "positive_somatic_control_mimsi_mean_msi_score", "qc_value": "0.06808366477489472" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "positive_somatic_control_mimsi_min_msi_score", "qc_value": "0.02963821217417717" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "positive_somatic_control_mimsi_msi_status", "qc_value": "MSS" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "mimsi", "qc_metric_name": "positive_somatic_control_mimsi_uci", "qc_value": "0.08572681421077015" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "msi", "qc_metric_name": "positive_somatic_control_msi_total_sites", "qc_value": "178" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "msi", "qc_metric_name": "positive_somatic_control_msi_unstable_pct", "qc_value": "20.22" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "msi", "qc_metric_name": "positive_somatic_control_msi_unstable_sites", "qc_value": "36" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "positive_somatic_control_snv_indel_coa_missed_variants", "qc_value": "13655;13983;376002;163343;177678" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "positive_somatic_control_snv_indel_coa_recovered_count", "qc_value": "0" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "positive_somatic_control_snv_indel_coa_truth_total", "qc_value": "5" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "positive_somatic_control_snv_indel_indel_count", "qc_value": "8" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "snv_indel", "qc_metric_name": "positive_somatic_control_snv_indel_snv_count", "qc_value": "2" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "tmb", "qc_metric_name": "positive_somatic_control_tmb_effective_coding_region_size", "qc_value": "34.15" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "tmb", "qc_metric_name": "positive_somatic_control_tmb_non_synonymous_count", "qc_value": "0" }, { "control_type": "positive_somatic", "sample_id": "NA12878_c_0002_gDNA_0004_B23KGCJLT4_1", "variant_type": "tmb", "qc_metric_name": "positive_somatic_control_tmb_score", "qc_value": "0.0" } ]