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control_metrics.csv
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s3://natera-rnd-pltf-dev-s3-gitlab-results/daq/build2802298/edge-cases-blood-run/63697587/reports/control_metrics.csv
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gitlab-daq-build2802298-edge-cases-blood-run-63697587
Published
Jun 05, 2026 10:05 PM

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control_type sample_id variant_type qc_metric_name qc_value
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv germline_control_cnv_abnormal_ploidy false
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv germline_control_cnv_abnormal_ploidy_chromosomes NONE
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv germline_control_cnv_del_dup_pass_ratio 5.2000
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv germline_control_cnv_del_pass_count 52
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv germline_control_cnv_dup_pass_count 10
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv germline_control_cnv_landmark_del_missed NONE
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv germline_control_cnv_landmark_del_recovered_count 2
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv germline_control_cnv_landmark_del_truth_total 2
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv germline_control_cnv_qc_failed false
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b17_del_cn 0
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b17_del_filter PASS
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b28_del_cn 1
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b28_del_filter PASS
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 hla germline_control_hla_alleles_recovered_count 6
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 hla germline_control_hla_alleles_truth_total 6
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 snv_indel germline_control_snv_indel_giab_missed_variants NONE
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 snv_indel germline_control_snv_indel_giab_recovered_count 12
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 snv_indel germline_control_snv_indel_giab_truth_total 12
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 snv_indel germline_control_snv_indel_indel_count 1369
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 snv_indel germline_control_snv_indel_snv_count 25673
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv germline_control_cnv_abnormal_ploidy false
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv germline_control_cnv_abnormal_ploidy_chromosomes NONE
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv germline_control_cnv_del_dup_pass_ratio 4.4167
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv germline_control_cnv_del_pass_count 53
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv germline_control_cnv_dup_pass_count 12
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv germline_control_cnv_landmark_del_missed NONE
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv germline_control_cnv_landmark_del_recovered_count 2
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv germline_control_cnv_landmark_del_truth_total 2
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv germline_control_cnv_qc_failed false
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b17_del_cn 0
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b17_del_filter PASS
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b28_del_cn 1
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b28_del_filter PASS
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 hla germline_control_hla_alleles_recovered_count 6
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 hla germline_control_hla_alleles_truth_total 6
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 snv_indel germline_control_snv_indel_giab_missed_variants NONE
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 snv_indel germline_control_snv_indel_giab_recovered_count 12
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 snv_indel germline_control_snv_indel_giab_truth_total 12
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 snv_indel germline_control_snv_indel_indel_count 1365
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 snv_indel germline_control_snv_indel_snv_count 25704
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv germline_control_cnv_abnormal_ploidy false
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv germline_control_cnv_abnormal_ploidy_chromosomes NONE
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv germline_control_cnv_del_dup_pass_ratio 5.5556
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv germline_control_cnv_del_pass_count 50
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv germline_control_cnv_dup_pass_count 9
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv germline_control_cnv_landmark_del_missed NONE
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv germline_control_cnv_landmark_del_recovered_count 2
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv germline_control_cnv_landmark_del_truth_total 2
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv germline_control_cnv_qc_failed false
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b17_del_cn 0
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b17_del_filter PASS
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b28_del_cn 1
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b28_del_filter PASS
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 hla germline_control_hla_alleles_recovered_count 6
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 hla germline_control_hla_alleles_truth_total 6
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 snv_indel germline_control_snv_indel_giab_missed_variants NONE
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 snv_indel germline_control_snv_indel_giab_recovered_count 12
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 snv_indel germline_control_snv_indel_giab_truth_total 12
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 snv_indel germline_control_snv_indel_indel_count 1366
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 snv_indel germline_control_snv_indel_snv_count 25633
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv germline_control_cnv_abnormal_ploidy false
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv germline_control_cnv_abnormal_ploidy_chromosomes NONE
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv germline_control_cnv_del_dup_pass_ratio 5.3333
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv germline_control_cnv_del_pass_count 48
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv germline_control_cnv_dup_pass_count 9
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv germline_control_cnv_landmark_del_missed NONE
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv germline_control_cnv_landmark_del_recovered_count 2
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv germline_control_cnv_landmark_del_truth_total 2
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv germline_control_cnv_qc_failed false
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b17_del_cn 0
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b17_del_filter PASS
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b28_del_cn 1
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b28_del_filter PASS
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 hla germline_control_hla_alleles_recovered_count 6
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 hla germline_control_hla_alleles_truth_total 6
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 snv_indel germline_control_snv_indel_giab_missed_variants NONE
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 snv_indel germline_control_snv_indel_giab_recovered_count 12
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 snv_indel germline_control_snv_indel_giab_truth_total 12
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 snv_indel germline_control_snv_indel_indel_count 1347
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 snv_indel germline_control_snv_indel_snv_count 25652
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv negative_somatic_control_cnv_segment_count 3
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_lci 0.02622210296849425
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_max_msi_score 0.041221123188734055
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_mean_msi_score 0.030888851545751096
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_min_msi_score 0.019855141639709473
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_msi_status MSS
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_uci 0.03555560012300794
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 msi negative_somatic_control_msi_total_sites 178
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 msi negative_somatic_control_msi_unstable_pct 23.03
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 msi negative_somatic_control_msi_unstable_sites 41
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 snv_indel negative_somatic_control_snv_indel_indel_count 5
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 snv_indel negative_somatic_control_snv_indel_snv_count 1
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 tmb negative_somatic_control_tmb_effective_coding_region_size 34.15
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 tmb negative_somatic_control_tmb_non_synonymous_count 0
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 tmb negative_somatic_control_tmb_score 0.0
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv negative_somatic_control_cnv_segment_count 5
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_lci 0.024533608174867834
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_max_msi_score 0.04560926556587219
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_mean_msi_score 0.03030748274177313
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_min_msi_score 0.019481247290968895
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_msi_status MSS
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_uci 0.036081357308678425
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 msi negative_somatic_control_msi_total_sites 178
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 msi negative_somatic_control_msi_unstable_pct 22.47
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 msi negative_somatic_control_msi_unstable_sites 40
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 snv_indel negative_somatic_control_snv_indel_indel_count 2
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 snv_indel negative_somatic_control_snv_indel_snv_count 0
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 tmb negative_somatic_control_tmb_effective_coding_region_size 34.15
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 tmb negative_somatic_control_tmb_non_synonymous_count 0
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 tmb negative_somatic_control_tmb_score 0.0
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv negative_somatic_control_cnv_segment_count 7
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_lci 0.025747463799561318
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_max_msi_score 0.07450731098651886
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_mean_msi_score 0.03817997947335243
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_min_msi_score 0.01320294477045536
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_msi_status MSS
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_uci 0.05061249514714354
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 msi negative_somatic_control_msi_total_sites 177
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 msi negative_somatic_control_msi_unstable_pct 14.12
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 msi negative_somatic_control_msi_unstable_sites 25
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 snv_indel negative_somatic_control_snv_indel_indel_count 3
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 snv_indel negative_somatic_control_snv_indel_snv_count 2
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 tmb negative_somatic_control_tmb_effective_coding_region_size 34.15
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 tmb negative_somatic_control_tmb_non_synonymous_count 0
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 tmb negative_somatic_control_tmb_score 0.0
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv negative_somatic_control_cnv_segment_count 14
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_lci 0.05632864295722269
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_max_msi_score 0.10977954417467117
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_mean_msi_score 0.07018488310277463
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_min_msi_score 0.04696954786777496
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_msi_status MSS
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_uci 0.08404112324832656
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 msi negative_somatic_control_msi_total_sites 178
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 msi negative_somatic_control_msi_unstable_pct 20.22
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 msi negative_somatic_control_msi_unstable_sites 36
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 snv_indel negative_somatic_control_snv_indel_indel_count 8
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 snv_indel negative_somatic_control_snv_indel_snv_count 2
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 tmb negative_somatic_control_tmb_effective_coding_region_size 34.15
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 tmb negative_somatic_control_tmb_non_synonymous_count 0
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 tmb negative_somatic_control_tmb_score 0.0
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_missed MYCN;MET
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_recovered_copy_numbers NONE
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_recovered_count 0
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_truth_total 2
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv positive_somatic_control_cnv_segment_count 3
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_lci 0.026449470154683713
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_max_msi_score 0.046199601143598557
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_mean_msi_score 0.03298479374498129
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_min_msi_score 0.018430830910801888
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_msi_status MSS
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_uci 0.03952011733527887
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 msi positive_somatic_control_msi_total_sites 178
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 msi positive_somatic_control_msi_unstable_pct 23.03
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 msi positive_somatic_control_msi_unstable_sites 41
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_coa_missed_variants 163343;177678;13983;376002;13655
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_coa_recovered_count 0
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_coa_truth_total 5
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_indel_count 5
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_snv_count 1
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 tmb positive_somatic_control_tmb_effective_coding_region_size 34.15
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 tmb positive_somatic_control_tmb_non_synonymous_count 0
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 tmb positive_somatic_control_tmb_score 0.0
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_missed MYCN;MET
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_recovered_copy_numbers NONE
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_recovered_count 0
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_truth_total 2
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv positive_somatic_control_cnv_segment_count 5
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_lci 0.01950270306487239
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_max_msi_score 0.05042268708348274
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_mean_msi_score 0.027736567240208388
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_min_msi_score 0.014864913187921047
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_msi_status MSS
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_uci 0.03597043141554439
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 msi positive_somatic_control_msi_total_sites 178
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 msi positive_somatic_control_msi_unstable_pct 22.47
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 msi positive_somatic_control_msi_unstable_sites 40
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_coa_missed_variants 13983;376002;13655;163343;177678
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_coa_recovered_count 0
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_coa_truth_total 5
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_indel_count 2
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_snv_count 0
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 tmb positive_somatic_control_tmb_effective_coding_region_size 34.15
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 tmb positive_somatic_control_tmb_non_synonymous_count 0
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 tmb positive_somatic_control_tmb_score 0.0
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_missed MYCN;MET
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_recovered_copy_numbers NONE
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_recovered_count 0
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_truth_total 2
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv positive_somatic_control_cnv_segment_count 7
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_lci 0.03246478471634626
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_max_msi_score 0.07176382094621658
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_mean_msi_score 0.043101522140204906
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_min_msi_score 0.021567203104496002
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_msi_status MSS
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_uci 0.053738259564063556
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 msi positive_somatic_control_msi_total_sites 177
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 msi positive_somatic_control_msi_unstable_pct 14.12
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 msi positive_somatic_control_msi_unstable_sites 25
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_coa_missed_variants 13655;13983;163343;177678;376002
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_coa_recovered_count 0
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_coa_truth_total 5
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_indel_count 3
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_snv_count 2
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 tmb positive_somatic_control_tmb_effective_coding_region_size 34.15
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 tmb positive_somatic_control_tmb_non_synonymous_count 0
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 tmb positive_somatic_control_tmb_score 0.0
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_missed MYCN;MET
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_recovered_copy_numbers NONE
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_recovered_count 0
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_truth_total 2
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv positive_somatic_control_cnv_segment_count 14
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_lci 0.05044051533901929
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_max_msi_score 0.10746132582426071
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_mean_msi_score 0.06808366477489472
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_min_msi_score 0.02963821217417717
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_msi_status MSS
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_uci 0.08572681421077015
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 msi positive_somatic_control_msi_total_sites 178
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 msi positive_somatic_control_msi_unstable_pct 20.22
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 msi positive_somatic_control_msi_unstable_sites 36
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_coa_missed_variants 13655;13983;376002;163343;177678
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_coa_recovered_count 0
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_coa_truth_total 5
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_indel_count 8
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_snv_count 2
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 tmb positive_somatic_control_tmb_effective_coding_region_size 34.15
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 tmb positive_somatic_control_tmb_non_synonymous_count 0
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 tmb positive_somatic_control_tmb_score 0.0
229 rows