File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/eaf0bee257ef44d2f04ff18f7d1268/.command.log
Size
1.2 KB
Task
DAQ:CONTROL_METRICS:GERMLINE_METRICS:GERMLINE_SNV_INDEL (germline_control_3)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/d955a529732efda3188c05fcdeafb1/germline_control_3.haplotyper_rf.gt_corrected.vcf.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/d955a529732efda3188c05fcdeafb1/germline_control_3.haplotyper_rf.gt_corrected.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/eaf0bee257ef44d2f04ff18f7d1268/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/control_truth/giab/na12878_hardcore.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/eaf0bee257ef44d2f04ff18f7d1268/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/control_truth/giab/na12878_hardcore.vcf.gz.tbi
==> STAGING COMPLETE (8 inputs)

Lines   total/split/joined/realigned/skipped:	12/0/0/0/0
Lines   total/split/joined/realigned/skipped:	26999/0/0/0/0