cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_F0L-N1-BDNA-1_B23KGCJLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1029_F0L-N1-BDNA-1_B23KGCJLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119919268, elapsed 3.3s, est remaining 62.4s, peak mem 3326MB, user 81.4s, sys 3.3s, output queue size 182
progress 10% @chr2:23684399, elapsed 6.1s, est remaining 55.1s, peak mem 3668MB, user 151.8s, sys 4.5s, output queue size 655
progress 15% @chr2:190516270, elapsed 9.7s, est remaining 55.1s, peak mem 3878MB, user 238.6s, sys 6.4s, output queue size 460
progress 20% @chr3:98822669, elapsed 13.4s, est remaining 53.8s, peak mem 4033MB, user 332.2s, sys 7.8s, output queue size 443
progress 25% @chr4:88664153, elapsed 16.3s, est remaining 48.9s, peak mem 4033MB, user 402.6s, sys 9.0s, output queue size 551
progress 30% @chr5:148064045, elapsed 18.8s, est remaining 43.8s, peak mem 4033MB, user 464.0s, sys 9.8s, output queue size 213
progress 35% @chr6:131949264, elapsed 22.4s, est remaining 41.7s, peak mem 4077MB, user 554.5s, sys 11.2s, output queue size 643
progress 40% @chr7:128845990, elapsed 26.5s, est remaining 39.7s, peak mem 4251MB, user 648.7s, sys 12.3s, output queue size 542
progress 45% @chr9:116800, elapsed 30.6s, est remaining 37.5s, peak mem 4304MB, user 757.2s, sys 13.5s, output queue size 85
progress 50% @chr10:33256316, elapsed 34.2s, est remaining 34.2s, peak mem 4340MB, user 848.0s, sys 14.4s, output queue size 106
progress 55% @chr11:48167204, elapsed 37.2s, est remaining 30.4s, peak mem 4340MB, user 921.7s, sys 15.2s, output queue size 10
progress 60% @chr12:26123630, elapsed 40.8s, est remaining 27.2s, peak mem 4340MB, user 1010.4s, sys 16.1s, output queue size 807
progress 65% @chr13:32336258, elapsed 44.1s, est remaining 23.7s, peak mem 4340MB, user 1095.2s, sys 16.9s, output queue size 979
progress 70% @chr15:43178607, elapsed 47.2s, est remaining 20.2s, peak mem 4340MB, user 1173.7s, sys 17.7s, output queue size 454
progress 75% @chr16:30983635, elapsed 51.0s, est remaining 17.0s, peak mem 4340MB, user 1272.4s, sys 18.5s, output queue size 34
progress 80% @chr17:40339002, elapsed 54.9s, est remaining 13.7s, peak mem 4340MB, user 1372.8s, sys 19.7s, output queue size 679
progress 85% @chr19:5719704, elapsed 58.4s, est remaining 10.3s, peak mem 4340MB, user 1459.2s, sys 20.6s, output queue size 403
progress 90% @chr19:55931993, elapsed 61.7s, est remaining 6.9s, peak mem 4340MB, user 1544.4s, sys 21.4s, output queue size 103
progress 95% @chr22:36306414, elapsed 65.3s, est remaining 3.4s, peak mem 4352MB, user 1635.1s, sys 22.6s, output queue size 23
progress 100% @chrX:154928571, elapsed 68.7s, est remaining 0.0s, peak mem 4367MB, user 1719.0s, sys 23.5s, output queue size 637
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
input file size: 20479246791
reads: 409336898
contig: 201779 intervals 37922265 bases
advance: 208647 calls 821.081 user 15.669 sys 869.363 real
done: 1 calls 0.368 user 0.458 sys 0.827 real
execute: 1 calls 0.008 user 0.001 sys 68.661 real
fetch_reads: 208647 calls 70.339 user 0.244 sys 75.027 real
fetch_ref: 207063 calls 0.871 user 1.196 sys 1.917 real
fetch_vcf: 207063 calls 76.395 user 2.505 sys 84.223 real
idle: 95 calls 0.138 user 0.001 sys 32.208 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 292547 calls 1021.912 user 3.714 sys 1052.302 real
overall: 4579950592 mem 2072.396 user 25.354 sys 70.183 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory