.command.sh - Workdir - DAQ:SAMTOOLS_IDXSTATS_COUNT (1029_0I-N1-BDNA-1_B23KGCJLT4_1)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/e2b385f0f17c0527401d2a06ab8526/.command.sh
Size: 310 bytes
Task: DAQ:SAMTOOLS_IDXSTATS_COUNT (1029_0I-N1-BDNA-1_B23KGCJLT4_1)
Attempt

Content

#!/bin/bash -Ceuo pipefail
bai_mapped_count.py 1029_0I-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai > 1029_0I-N1-BDNA-1_B23KGCJLT4_1.mapped_count.txt

cat <<-END_VERSIONS > versions.yml
"DAQ:SAMTOOLS_IDXSTATS_COUNT":
    python: $(python3 --version | sed 's/Python //')
    bai_mapped_count: 1.0.0
END_VERSIONS