cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_1XX-N1-BDNA-1_B23KGCJLT4_1.md.bam --read_filter QualCalFilter,table=1029_1XX-N1-BDNA-1_B23KGCJLT4_1.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1029_1XX-N1-BDNA-1_B23KGCJLT4_1.table.post --algo ReadWriter 1029_1XX-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:187000001, elapsed 10.7s, est remaining 202.8s, peak mem 3549MB, user 258.7s, sys 9.4s, output queue size 52
progress 10% @chr2:80000001, elapsed 18.4s, est remaining 165.7s, peak mem 3970MB, user 514.6s, sys 11.5s, output queue size 48
progress 15% @chr3:17000001, elapsed 27.7s, est remaining 157.2s, peak mem 4089MB, user 773.7s, sys 14.0s, output queue size 122
progress 20% @chr3:176000001, elapsed 35.4s, est remaining 141.7s, peak mem 4125MB, user 1016.4s, sys 16.0s, output queue size 141
progress 25% @chr4:134000001, elapsed 42.3s, est remaining 127.0s, peak mem 4147MB, user 1230.1s, sys 17.6s, output queue size 302
progress 30% @chr5:100000001, elapsed 47.8s, est remaining 111.6s, peak mem 4152MB, user 1396.4s, sys 18.6s, output queue size 464
progress 35% @chr6:79000001, elapsed 55.5s, est remaining 103.1s, peak mem 4162MB, user 1593.3s, sys 19.8s, output queue size 625
progress 40% @chr7:79000001, elapsed 64.4s, est remaining 96.6s, peak mem 4221MB, user 1857.3s, sys 21.3s, output queue size 195
progress 45% @chr8:74000001, elapsed 73.8s, est remaining 90.2s, peak mem 4226MB, user 2158.0s, sys 23.1s, output queue size 204
progress 50% @chr9:88000001, elapsed 81.2s, est remaining 81.2s, peak mem 4272MB, user 2372.2s, sys 24.2s, output queue size 366
progress 55% @chr10:118000001, elapsed 90.7s, est remaining 74.2s, peak mem 4311MB, user 2655.7s, sys 25.7s, output queue size 348
progress 60% @chr11:134000001, elapsed 100.4s, est remaining 66.9s, peak mem 4311MB, user 2933.8s, sys 26.7s, output queue size 510
progress 65% @chr13:19000001, elapsed 109.4s, est remaining 58.9s, peak mem 4317MB, user 3219.3s, sys 28.1s, output queue size 672
progress 70% @chr14:84000001, elapsed 115.1s, est remaining 49.3s, peak mem 4320MB, user 3379.5s, sys 28.9s, output queue size 833
progress 75% @chr16:42000001, elapsed 124.7s, est remaining 41.6s, peak mem 4327MB, user 3690.9s, sys 30.3s, output queue size 461
progress 80% @chr17:50000001, elapsed 139.4s, est remaining 34.9s, peak mem 4357MB, user 4110.1s, sys 31.9s, output queue size 190
progress 85% @chr19:42000001, elapsed 152.0s, est remaining 26.8s, peak mem 4357MB, user 4529.9s, sys 33.5s, output queue size 351
progress 90% @chrX:42000001, elapsed 160.6s, est remaining 17.8s, peak mem 4446MB, user 4782.8s, sys 34.9s, output queue size 513
progress 95% @chrY:53000001, elapsed 166.9s, est remaining 8.8s, peak mem 4466MB, user 4983.0s, sys 35.9s, output queue size 240
progress 100% @chrX:67000001, elapsed 176.7s, est remaining 0.0s, peak mem 4466MB, user 5176.1s, sys 37.0s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 14296816108
output file size: 24268245187
reads: 285377150
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.005 user 0.034 sys 0.052 real
ReadQualCal::delayed_init: 1 calls 0.001 user 0.000 sys 0.022 real
ReadQualCal::init: 1 calls 0.000 user 0.000 sys 0.006 real
advance: 3219322 calls 340.828 user 8.800 sys 358.053 real
done: 1 calls 0.435 user 0.807 sys 1.246 real
exec_no_coor: 1 calls 0.000 user 0.009 sys 0.013 real
execute: 1 calls 0.001 user 0.000 sys 176.978 real
fetch: 3219323 calls 13.531 user 0.310 sys 20.885 real
fetch_reads: 3219322 calls 64.884 user 0.749 sys 67.134 real
fetch_ref: 1444685 calls 4.499 user 1.490 sys 6.130 real
fetch_vcf: 1444685 calls 101.976 user 2.189 sys 107.217 real
idle: 11718 calls 8.610 user 0.090 sys 248.257 real
init: 1 calls 0.001 user 0.000 sys 0.029 real
update: 1528763 calls 1262.387 user 6.071 sys 1298.661 real
write: 3219323 calls 3686.903 user 12.919 sys 3718.714 real
overall: 4683423744 mem 5195.376 user 46.441 sys 179.283 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before 1029_1XX-N1-BDNA-1_B23KGCJLT4_1.table --after 1029_1XX-N1-BDNA-1_B23KGCJLT4_1.table.post 1029_1XX-N1-BDNA-1_B23KGCJLT4_1.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.027 user 0.003 sys 0.044 real
done: 1 calls 0.072 user 0.008 sys 0.080 real
idle: 59 calls 0.002 user 0.000 sys 31.281 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 85090304 mem 0.083 user 0.055 sys 1.052 real