.command.err - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr10_74133927-74134264.bed)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/edfac555cae2fc81a34480fea53c5c/.command.err
Size: 68.3 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr10_74133927-74134264.bed)
Attempt
Content

[2026-06-05T23:00:42.321582Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T23:00:42.322952Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T23:00:42.322964Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T23:00:42.322969Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T23:00:42.322973Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXu4F89I'
[2026-06-05T23:00:42.322977Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T23:00:42.322981Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T23:00:42.322985Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T23:00:42.322988Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-05T23:00:42.322992Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T23:00:42.322996Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T23:00:42.322999Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T23:00:42.323003Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T23:00:42.323007Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T23:00:42.323931Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T23:00:42.324038Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T23:00:42.329852Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T23:00:42.330664Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T23:00:42.331089Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T23:00:42.331527Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T23:00:42.331815Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.332531Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.332624Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.332698Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.332816Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.332904Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.333227Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.333444Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.333658Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T23:00:42.333761Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.333833Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.333947Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.334212Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.335754Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.336381Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.336693Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T23:00:42.337009Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.337089Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.337206Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.337270Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.337460Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.337528Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.337642Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.337710Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.337825Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.338062Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.338434Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.338687Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.338803Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.338870Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.338983Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.339075Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.339196Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.339261Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.339393Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.339485Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.339628Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.339718Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.339948Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.340285Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.340894Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.341004Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.341136Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.341205Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.341317Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.341384Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.341502Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.341631Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.341885Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.342355Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.342482Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.342549Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.342661Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.342723Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.342839Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.342903Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.343017Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.343083Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.343191Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.343258Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.343592Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.343982Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.344118Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.344184Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.344292Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.344363Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.344474Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.344535Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.344644Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.344709Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.344823Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.344886Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.345104Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.345612Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.362654Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.362933Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.363081Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.363246Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:42.363454Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.364061Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.364354Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-05T23:00:42.364453Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.364537Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.364663Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.364759Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T23:00:42.365138Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T23:00:42.365239Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T23:00:42.365747Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-05T23:00:42.366384Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-05T23:00:42.367264Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T23:00:42.368791Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T23:00:42.369842Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-05T23:00:42.371984Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-05T23:00:42.372458Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T23:00:42.377983Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-05T23:00:42.379181Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T23:00:42.381863Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-05T23:00:42.384194Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T23:00:42.388077Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T23:00:42.389165Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T23:00:42.391447Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-05T23:00:42.454408Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:42.455238Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-05T23:00:42.457592Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:42.458026Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:42.458526Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-05T23:00:42.459042Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T23:00:42.459435Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-05T23:00:42.463807Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-05T23:00:55.386639Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:55.388172Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-05T23:00:55.391012Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-05T23:00:56.003327Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:56.004601Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T23:00:56.007618Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T23:00:56.068888Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:56.070249Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-05T23:00:56.073368Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-05T23:00:56.585355Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:56.586504Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T23:00:56.589497Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T23:00:56.618622Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:56.619805Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-05T23:00:56.622776Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-05T23:01:02.787402Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:02.788606Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T23:01:02.791990Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T23:01:03.103302Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:03.104411Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T23:01:03.107893Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T23:01:06.226472Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:06.227793Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T23:01:06.231070Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T23:01:06.292143Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:06.293112Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-05T23:01:06.295904Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-05T23:01:18.413136Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:18.414487Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T23:01:18.417384Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T23:01:18.446470Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:18.447986Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-05T23:01:18.450899Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-05T23:01:26.269861Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:26.270838Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T23:01:26.273976Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T23:01:26.335133Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:26.335965Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T23:01:26.338842Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T23:01:32.453161Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:32.453925Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-05T23:01:32.456900Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-05T23:01:36.430522Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T23:01:36.478206Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:36.478295Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:36.479187Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-05T23:01:36.479720Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-05T23:01:36.482973Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-05T23:01:36.483866Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-05T23:01:36.512038Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:36.512977Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-05T23:01:36.515945Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-05T23:01:39.031735Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:39.032711Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T23:01:39.035613Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T23:01:39.096782Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:39.097747Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-05T23:01:39.100760Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-05T23:01:43.019891Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:43.020944Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-05T23:01:43.023731Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-05T23:01:43.052874Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:43.053868Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-05T23:01:43.056605Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-05T23:01:44.871364Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:44.872241Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-05T23:01:44.874992Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-05T23:01:44.904157Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:44.905036Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T23:01:44.907604Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T23:01:44.968991Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:44.969949Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-05T23:01:44.972606Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-05T23:01:45.001789Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:45.002694Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T23:01:45.005747Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T23:01:45.066798Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:45.067645Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-05T23:01:45.070380Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-05T23:01:45.099621Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:45.100510Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-05T23:01:45.103218Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-05T23:01:48.721544Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:48.722461Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-05T23:01:48.725680Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-05T23:01:48.786691Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:48.787668Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-05T23:01:48.791167Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-05T23:01:51.107053Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:51.108090Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-05T23:01:51.111646Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-05T23:01:51.140316Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:51.141174Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-05T23:01:51.143729Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-05T23:01:51.205241Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:51.206178Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T23:01:51.209316Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T23:01:51.238442Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:51.239358Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T23:01:51.242202Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T23:01:51.271362Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:51.272239Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T23:01:51.275136Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T23:01:53.891698Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:53.892603Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-05T23:01:53.895843Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-05T23:01:53.956833Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:53.957716Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-05T23:01:53.960408Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-05T23:01:53.989586Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:53.990388Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T23:01:53.993046Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T23:01:54.022262Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:54.023099Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-05T23:01:54.025585Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-05T23:01:54.054947Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:54.055744Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-05T23:01:54.058310Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-05T23:01:54.087650Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:54.088448Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-05T23:01:54.090976Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-05T23:01:54.120306Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:54.121156Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-05T23:01:54.123945Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-05T23:02:03.945798Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T23:02:03.946992Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-05T23:02:03.950159Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-05T23:02:08.068747Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T23:02:08.069573Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-05T23:02:08.072938Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-05T23:02:08.101865Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T23:02:08.102685Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T23:02:08.105459Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T23:02:08.134658Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T23:02:08.135410Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-05T23:02:08.138486Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-05T23:02:08.167308Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T23:02:08.168111Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-05T23:02:08.170760Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-05T23:02:08.200063Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T23:02:08.200880Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-05T23:02:08.203601Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-05T23:02:15.221588Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T23:02:15.222748Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T23:02:15.226058Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T23:02:15.254935Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T23:02:15.255540Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-05T23:02:15.258228Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-05T23:02:15.287385Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T23:02:15.287938Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T23:02:15.291180Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T23:02:15.352018Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T23:02:15.352640Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T23:02:15.355565Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T23:02:15.384574Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T23:02:15.385106Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-05T23:02:15.387707Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-05T23:02:15.416936Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T23:02:15.417498Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-05T23:02:15.420438Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-05T23:02:20.582391Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T23:02:20.582931Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-05T23:02:20.586154Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-05T23:02:20.615196Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T23:02:20.615769Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T23:02:20.618490Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T23:02:20.647698Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T23:02:31.364932Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T23:02:31.366159Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-05T23:02:31.369511Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-05T23:02:31.430436Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T23:02:36.545268Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T23:02:36.545782Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-05T23:02:36.549319Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-05T23:02:36.578025Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T23:02:37.193319Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T23:02:37.193815Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-05T23:02:37.197001Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-05T23:02:37.226036Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T23:02:57.643007Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T23:02:57.644042Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T23:02:57.646779Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T23:02:57.675990Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T23:03:08.643396Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T23:03:08.644342Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-05T23:03:08.647560Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-05T23:03:08.708616Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T23:03:58.287491Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T23:03:58.288067Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-05T23:03:58.291155Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-05T23:03:58.320299Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T23:08:16.063438Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T23:08:16.063998Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T23:08:16.066345Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T23:08:16.095898Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T23:08:16.096116Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T23:08:16.096215Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T23:08:16.096408Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T23:08:16.096972Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T23:08:16.100469Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T23:08:16.101560Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T23:08:16.102614Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T23:08:16.128954Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T23:08:16.129006Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T23:08:16.129026Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T23:08:16.129190Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T23:08:16.129399Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T23:08:16.131645Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T23:08:16.132641Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T23:08:16.161906Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T23:08:16.161965Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T23:08:16.162137Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T23:08:16.164448Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T23:08:16.194069Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T23:08:30.969587Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T23:08:45.797711Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T23:08:45.797711Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] 
[2026-06-05T23:08:45.797711Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T23:08:45.797775Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] 
[2026-06-05T23:08:45.797786Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T23:08:45.797792Z] [nf-0eedfac555cae2fc81a34480fea53c5c-6ce8c-vdl7n] [601_1] [WorkflowRunner] Elapsed time for full workflow: 483 sec