cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1.md.bam --read_filter QualCalFilter,table=1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1.table.post --algo ReadWriter 1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:187000001, elapsed 14.5s, est remaining 275.8s, peak mem 3937MB, user 345.9s, sys 5.7s, output queue size 145
progress 10% @chr2:90000001, elapsed 25.3s, est remaining 227.8s, peak mem 4633MB, user 709.5s, sys 7.5s, output queue size 48
progress 15% @chr3:4000001, elapsed 37.6s, est remaining 213.1s, peak mem 4851MB, user 1062.8s, sys 9.4s, output queue size 122
progress 20% @chr3:174000001, elapsed 48.0s, est remaining 192.0s, peak mem 4909MB, user 1394.9s, sys 11.2s, output queue size 141
progress 25% @chr4:134000001, elapsed 57.5s, est remaining 172.5s, peak mem 4979MB, user 1683.7s, sys 12.5s, output queue size 302
progress 30% @chr5:99000001, elapsed 65.0s, est remaining 151.6s, peak mem 4979MB, user 1906.4s, sys 13.4s, output queue size 464
progress 35% @chr6:79000001, elapsed 75.5s, est remaining 140.3s, peak mem 5024MB, user 2181.9s, sys 14.9s, output queue size 625
progress 40% @chr7:47000001, elapsed 87.2s, est remaining 130.8s, peak mem 5188MB, user 2534.7s, sys 16.6s, output queue size 197
progress 45% @chr8:75000001, elapsed 99.7s, est remaining 121.9s, peak mem 5210MB, user 2927.1s, sys 18.3s, output queue size 204
progress 50% @chr9:42000001, elapsed 109.8s, est remaining 109.8s, peak mem 5298MB, user 3227.1s, sys 19.7s, output queue size 366
progress 55% @chr10:93000001, elapsed 122.6s, est remaining 100.3s, peak mem 5354MB, user 3607.3s, sys 21.5s, output queue size 348
progress 60% @chr11:134000001, elapsed 135.8s, est remaining 90.5s, peak mem 5354MB, user 3999.0s, sys 22.9s, output queue size 510
progress 65% @chr13:23000001, elapsed 148.3s, est remaining 79.9s, peak mem 5354MB, user 4381.5s, sys 24.4s, output queue size 672
progress 70% @chr14:60000001, elapsed 156.0s, est remaining 66.9s, peak mem 5354MB, user 4600.4s, sys 25.3s, output queue size 833
progress 75% @chr16:42000001, elapsed 169.5s, est remaining 56.5s, peak mem 5409MB, user 5027.0s, sys 26.9s, output queue size 461
progress 80% @chr18:29000001, elapsed 189.9s, est remaining 47.5s, peak mem 5420MB, user 5610.4s, sys 29.1s, output queue size 190
progress 85% @chr19:49000001, elapsed 207.2s, est remaining 36.6s, peak mem 5420MB, user 6187.9s, sys 31.0s, output queue size 351
progress 90% @chrX:34000001, elapsed 219.0s, est remaining 24.3s, peak mem 5459MB, user 6531.2s, sys 32.4s, output queue size 513
progress 95% @chrY:53000001, elapsed 227.6s, est remaining 12.0s, peak mem 5459MB, user 6816.0s, sys 33.5s, output queue size 240
progress 100% @chrX:67000001, elapsed 242.6s, est remaining 0.0s, peak mem 5459MB, user 7074.1s, sys 34.6s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 20186912351
output file size: 34433065133
reads: 427636913
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.033 real
ReadQualCal::delayed_init: 1 calls 0.002 user 0.000 sys 0.023 real
ReadQualCal::init: 1 calls 0.000 user 0.000 sys 0.006 real
advance: 3219322 calls 475.754 user 8.009 sys 499.577 real
done: 1 calls 0.279 user 0.907 sys 1.192 real
exec_no_coor: 1 calls 0.000 user 0.013 sys 0.011 real
execute: 1 calls 0.008 user 0.000 sys 242.876 real
fetch: 3219323 calls 19.214 user 0.407 sys 28.140 real
fetch_reads: 3219322 calls 84.523 user 0.788 sys 87.356 real
fetch_ref: 1577114 calls 5.222 user 1.147 sys 6.445 real
fetch_vcf: 1577114 calls 103.868 user 1.517 sys 108.192 real
idle: 18662 calls 9.531 user 0.190 sys 381.993 real
init: 1 calls 0.002 user 0.000 sys 0.030 real
update: 1703865 calls 1557.435 user 3.175 sys 1602.353 real
write: 3219323 calls 5260.335 user 15.075 sys 5309.714 real
overall: 5725204480 mem 7094.659 user 46.039 sys 245.380 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before 1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1.table --after 1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1.table.post 1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.028 user 0.001 sys 0.043 real
done: 1 calls 0.076 user 0.004 sys 0.081 real
idle: 61 calls 0.002 user 0.000 sys 31.333 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 86806528 mem 0.095 user 0.038 sys 1.058 real