Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/e4fa0228175916f81ed93343341395/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/9f328f085024885b07fb6da773acde/1029_0I-N1-BDNA-1_B23KGCJLT4_1.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/FINAL_hotspot_list_07302025_hg38_sorted.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/9f328f085024885b07fb6da773acde/1029_0I-N1-BDNA-1_B23KGCJLT4_1.md.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/e4fa0228175916f81ed93343341395/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_0I-N1-BDNA-1_B23KGCJLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/FINAL_hotspot_list_07302025_hg38_sorted.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_0I-N1-BDNA-1_B23KGCJLT4_1_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:154000001, elapsed 0.9s, est remaining 17.8s, peak mem 922MB, user 22.1s, sys 0.7s, output queue size 146
progress 10% @chr2:90000001, elapsed 1.6s, est remaining 14.6s, peak mem 1102MB, user 44.7s, sys 1.0s, output queue size 117
progress 15% @chr2:177000001, elapsed 2.5s, est remaining 13.9s, peak mem 1632MB, user 67.9s, sys 1.5s, output queue size 203
progress 20% @chr3:178000001, elapsed 3.1s, est remaining 12.6s, peak mem 1660MB, user 89.1s, sys 2.1s, output queue size 174
progress 25% @chr4:136000001, elapsed 3.8s, est remaining 11.3s, peak mem 1680MB, user 108.6s, sys 2.5s, output queue size 302
progress 30% @chr5:107000001, elapsed 4.2s, est remaining 9.9s, peak mem 1720MB, user 123.0s, sys 2.7s, output queue size 464
progress 35% @chr6:79000001, elapsed 4.9s, est remaining 9.2s, peak mem 1744MB, user 141.1s, sys 3.0s, output queue size 625
progress 40% @chr7:67000001, elapsed 5.7s, est remaining 8.5s, peak mem 1841MB, user 165.4s, sys 3.3s, output queue size 195
progress 45% @chr8:78000001, elapsed 6.5s, est remaining 8.0s, peak mem 1843MB, user 190.6s, sys 3.5s, output queue size 204
progress 50% @chr9:39000001, elapsed 7.2s, est remaining 7.2s, peak mem 1899MB, user 209.1s, sys 3.8s, output queue size 366
progress 55% @chr10:118000001, elapsed 8.1s, est remaining 6.6s, peak mem 1960MB, user 234.0s, sys 4.1s, output queue size 527
progress 60% @chr11:134000001, elapsed 8.9s, est remaining 6.0s, peak mem 1960MB, user 261.9s, sys 4.4s, output queue size 510
progress 65% @chr13:23000001, elapsed 9.8s, est remaining 5.3s, peak mem 1967MB, user 286.2s, sys 4.7s, output queue size 672
progress 70% @chr14:72000001, elapsed 10.3s, est remaining 4.4s, peak mem 1970MB, user 303.0s, sys 4.9s, output queue size 833
progress 75% @chr16:42000001, elapsed 11.2s, est remaining 3.7s, peak mem 1986MB, user 328.2s, sys 5.1s, output queue size 995
progress 80% @chr18:25000001, elapsed 12.6s, est remaining 3.2s, peak mem 1986MB, user 368.9s, sys 5.8s, output queue size 623
progress 85% @chr19:39000001, elapsed 13.8s, est remaining 2.4s, peak mem 1986MB, user 412.0s, sys 6.2s, output queue size 351
progress 90% @chrX:32000001, elapsed 14.5s, est remaining 1.6s, peak mem 1986MB, user 435.0s, sys 6.6s, output queue size 513
progress 95% @chrY:51000001, elapsed 15.0s, est remaining 0.8s, peak mem 1986MB, user 446.4s, sys 6.9s, output queue size 675
progress 100% @chr22:23000001, elapsed 16.7s, est remaining 0.0s, peak mem 1986MB, user 465.7s, sys 7.1s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 15256738636
reads: 312198066
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 240.566 user 5.297 sys 244.926 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
exec_no_coor: 1 calls 0.001 user 0.000 sys 0.003 real
execute: 1 calls 0.001 user 0.009 sys 16.732 real
idle: 105 calls 0.141 user 0.001 sys 75.421 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 2083213312 mem 466.719 user 7.299 sys 17.925 real