cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_BLBE-N1-BDNA-1_B23KGCJLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1029_BLBE-N1-BDNA-1_B23KGCJLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 2.9s, est remaining 54.5s, peak mem 3257MB, user 70.1s, sys 3.8s, output queue size 176
progress 10% @chr2:21042361, elapsed 5.3s, est remaining 48.0s, peak mem 3483MB, user 132.0s, sys 4.6s, output queue size 654
progress 15% @chr2:189877272, elapsed 8.4s, est remaining 47.6s, peak mem 3691MB, user 206.9s, sys 5.5s, output queue size 451
progress 20% @chr3:98782958, elapsed 11.6s, est remaining 46.2s, peak mem 3808MB, user 286.5s, sys 6.5s, output queue size 431
progress 25% @chr4:88494165, elapsed 14.0s, est remaining 42.0s, peak mem 3808MB, user 345.7s, sys 7.0s, output queue size 549
progress 30% @chr5:146458884, elapsed 16.1s, est remaining 37.6s, peak mem 3808MB, user 399.2s, sys 7.6s, output queue size 198
progress 35% @chr6:132374631, elapsed 19.2s, est remaining 35.6s, peak mem 3808MB, user 475.6s, sys 8.0s, output queue size 639
progress 40% @chr7:128350856, elapsed 22.5s, est remaining 33.8s, peak mem 3840MB, user 552.9s, sys 9.0s, output queue size 543
progress 45% @chr9:116800, elapsed 26.0s, est remaining 31.8s, peak mem 3905MB, user 642.9s, sys 10.2s, output queue size 85
progress 50% @chr10:33186217, elapsed 29.1s, est remaining 29.1s, peak mem 3988MB, user 719.9s, sys 11.2s, output queue size 106
progress 55% @chr11:48144675, elapsed 31.6s, est remaining 25.9s, peak mem 3988MB, user 784.6s, sys 11.9s, output queue size 9
progress 60% @chr12:21765723, elapsed 34.7s, est remaining 23.1s, peak mem 3988MB, user 860.1s, sys 12.9s, output queue size 773
progress 65% @chr13:49551326, elapsed 37.6s, est remaining 20.2s, peak mem 3988MB, user 931.4s, sys 13.6s, output queue size 568
progress 70% @chr15:43037773, elapsed 40.3s, est remaining 17.3s, peak mem 3988MB, user 1000.0s, sys 14.2s, output queue size 455
progress 75% @chr16:30737049, elapsed 43.6s, est remaining 14.5s, peak mem 3988MB, user 1085.1s, sys 14.9s, output queue size 67
progress 80% @chr17:42676402, elapsed 47.0s, est remaining 11.7s, peak mem 3988MB, user 1172.2s, sys 15.6s, output queue size 705
progress 85% @chr19:5733856, elapsed 49.9s, est remaining 8.8s, peak mem 3988MB, user 1246.2s, sys 16.3s, output queue size 404
progress 90% @chr19:55577951, elapsed 52.8s, est remaining 5.9s, peak mem 3988MB, user 1319.8s, sys 17.0s, output queue size 106
progress 95% @chr22:36265151, elapsed 55.9s, est remaining 2.9s, peak mem 3988MB, user 1397.3s, sys 17.6s, output queue size 52
progress 100% @chr6_GL000251v2_alt:3939000, elapsed 58.8s, est remaining 0.0s, peak mem 3988MB, user 1468.3s, sys 18.1s, output queue size 7
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 16824571009
reads: 340647413
contig: 201779 intervals 37922265 bases
advance: 208647 calls 664.725 user 10.356 sys 704.711 real
done: 1 calls 0.336 user 0.650 sys 0.994 real
execute: 1 calls 0.012 user 0.000 sys 58.778 real
fetch_reads: 208647 calls 48.479 user 0.130 sys 51.680 real
fetch_ref: 206964 calls 0.904 user 0.807 sys 1.773 real
fetch_vcf: 206964 calls 77.966 user 2.012 sys 84.224 real
idle: 133 calls 0.130 user 0.000 sys 63.015 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 284709 calls 903.688 user 4.499 sys 939.212 real
overall: 4182491136 mem 1773.573 user 19.954 sys 61.222 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory