cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_BCAN-N1-BDNA-1_B23KGCJLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1029_BCAN-N1-BDNA-1_B23KGCJLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:117143588, elapsed 2.4s, est remaining 46.1s, peak mem 3108MB, user 59.5s, sys 3.3s, output queue size 191
progress 10% @chr2:21014448, elapsed 4.5s, est remaining 40.7s, peak mem 3314MB, user 111.7s, sys 4.1s, output queue size 660
progress 15% @chr2:190060062, elapsed 7.1s, est remaining 40.2s, peak mem 3409MB, user 174.2s, sys 5.0s, output queue size 451
progress 20% @chr3:98168700, elapsed 9.7s, est remaining 39.0s, peak mem 3521MB, user 242.7s, sys 5.9s, output queue size 436
progress 25% @chr4:88463532, elapsed 11.8s, est remaining 35.4s, peak mem 3528MB, user 293.8s, sys 6.5s, output queue size 87
progress 30% @chr5:147617911, elapsed 13.6s, est remaining 31.8s, peak mem 3544MB, user 339.5s, sys 6.9s, output queue size 222
progress 35% @chr6:132320629, elapsed 16.2s, est remaining 30.2s, peak mem 3557MB, user 404.1s, sys 7.7s, output queue size 637
progress 40% @chr7:128842231, elapsed 19.0s, est remaining 28.6s, peak mem 3611MB, user 468.7s, sys 8.3s, output queue size 550
progress 45% @chr9:116800, elapsed 21.9s, est remaining 26.8s, peak mem 3690MB, user 543.9s, sys 9.0s, output queue size 88
progress 50% @chr10:34111169, elapsed 24.5s, est remaining 24.5s, peak mem 3719MB, user 608.0s, sys 9.6s, output queue size 182
progress 55% @chr11:48139486, elapsed 26.7s, est remaining 21.8s, peak mem 3719MB, user 662.1s, sys 10.1s, output queue size 13
progress 60% @chr12:22201552, elapsed 29.2s, est remaining 19.5s, peak mem 3719MB, user 725.6s, sys 10.6s, output queue size 706
progress 65% @chr13:49488290, elapsed 31.6s, est remaining 17.0s, peak mem 3719MB, user 786.4s, sys 11.1s, output queue size 561
progress 70% @chr15:43085984, elapsed 33.9s, est remaining 14.5s, peak mem 3719MB, user 842.6s, sys 11.7s, output queue size 465
progress 75% @chr16:30737049, elapsed 36.6s, est remaining 12.2s, peak mem 3719MB, user 912.1s, sys 12.2s, output queue size 71
progress 80% @chr17:42673643, elapsed 39.4s, est remaining 9.8s, peak mem 3719MB, user 983.8s, sys 12.7s, output queue size 705
progress 85% @chr19:5751647, elapsed 41.9s, est remaining 7.4s, peak mem 3719MB, user 1046.1s, sys 13.2s, output queue size 405
progress 90% @chr19:55358145, elapsed 44.3s, est remaining 4.9s, peak mem 3719MB, user 1108.0s, sys 13.7s, output queue size 148
progress 95% @chr22:36306414, elapsed 46.8s, est remaining 2.5s, peak mem 3725MB, user 1172.4s, sys 14.2s, output queue size 25
progress 100% @chrY:25622443, elapsed 48.4s, est remaining 0.0s, peak mem 3726MB, user 1211.1s, sys 14.6s, output queue size 31
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 13370650856
reads: 272165720
contig: 201779 intervals 37922265 bases
advance: 208647 calls 528.240 user 8.146 sys 562.417 real
done: 1 calls 0.297 user 0.513 sys 0.813 real
execute: 1 calls 0.004 user 0.011 sys 48.380 real
fetch_reads: 208647 calls 32.801 user 0.191 sys 35.485 real
fetch_ref: 207110 calls 0.769 user 0.775 sys 1.635 real
fetch_vcf: 207110 calls 78.261 user 2.040 sys 83.074 real
idle: 92 calls 0.165 user 0.000 sys 31.879 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 271462 calls 747.317 user 2.843 sys 782.875 real
overall: 3907727360 mem 1459.215 user 16.007 sys 49.823 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory