cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_11H-N1-BDNA-1_B23KGCJLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1029_11H-N1-BDNA-1_B23KGCJLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:120100484, elapsed 3.4s, est remaining 65.3s, peak mem 3365MB, user 84.6s, sys 4.5s, output queue size 208
progress 10% @chr2:23639139, elapsed 6.3s, est remaining 57.1s, peak mem 3675MB, user 159.3s, sys 5.4s, output queue size 655
progress 15% @chr2:181535432, elapsed 10.0s, est remaining 56.4s, peak mem 3990MB, user 248.0s, sys 6.3s, output queue size 448
progress 20% @chr3:98149386, elapsed 13.6s, est remaining 54.6s, peak mem 4106MB, user 342.3s, sys 7.0s, output queue size 450
progress 25% @chr4:80286325, elapsed 16.5s, est remaining 49.6s, peak mem 4123MB, user 415.4s, sys 7.7s, output queue size 535
progress 30% @chr5:147896993, elapsed 19.1s, est remaining 44.6s, peak mem 4192MB, user 479.2s, sys 8.1s, output queue size 209
progress 35% @chr6:131700469, elapsed 22.8s, est remaining 42.3s, peak mem 4192MB, user 570.5s, sys 8.7s, output queue size 641
progress 40% @chr7:128350856, elapsed 26.7s, est remaining 40.0s, peak mem 4252MB, user 662.3s, sys 9.4s, output queue size 544
progress 45% @chr9:1051614, elapsed 30.8s, est remaining 37.7s, peak mem 4378MB, user 772.8s, sys 10.1s, output queue size 19
progress 50% @chr10:33330708, elapsed 34.5s, est remaining 34.5s, peak mem 4407MB, user 865.7s, sys 10.6s, output queue size 106
progress 55% @chr11:48144675, elapsed 37.6s, est remaining 30.8s, peak mem 4407MB, user 942.5s, sys 11.3s, output queue size 15
progress 60% @chr12:22643763, elapsed 41.2s, est remaining 27.5s, peak mem 4407MB, user 1034.1s, sys 11.8s, output queue size 704
progress 65% @chr13:49220338, elapsed 44.6s, est remaining 24.0s, peak mem 4407MB, user 1121.0s, sys 12.2s, output queue size 564
progress 70% @chr15:43135512, elapsed 47.9s, est remaining 20.5s, peak mem 4407MB, user 1202.4s, sys 12.7s, output queue size 457
progress 75% @chr16:30947052, elapsed 51.7s, est remaining 17.2s, peak mem 4407MB, user 1302.8s, sys 13.3s, output queue size 33
progress 80% @chr17:42697274, elapsed 55.7s, est remaining 13.9s, peak mem 4407MB, user 1406.7s, sys 13.9s, output queue size 704
progress 85% @chr19:5714183, elapsed 59.2s, est remaining 10.4s, peak mem 4407MB, user 1495.1s, sys 14.6s, output queue size 407
progress 90% @chr19:55613619, elapsed 62.5s, est remaining 6.9s, peak mem 4407MB, user 1583.5s, sys 15.1s, output queue size 137
progress 95% @chr22:36587465, elapsed 66.2s, est remaining 3.5s, peak mem 4450MB, user 1678.2s, sys 15.7s, output queue size 25
progress 100% @chr6_GL000254v2_alt:3881705, elapsed 69.6s, est remaining 0.0s, peak mem 4450MB, user 1764.9s, sys 16.2s, output queue size 1
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 20521533170
reads: 437628298
contig: 201779 intervals 37922265 bases
advance: 208647 calls 813.675 user 9.700 sys 854.023 real
done: 1 calls 0.297 user 0.433 sys 0.733 real
execute: 1 calls 0.006 user 0.003 sys 69.598 real
fetch_reads: 208647 calls 66.301 user 0.073 sys 69.924 real
fetch_ref: 206957 calls 0.918 user 0.582 sys 1.592 real
fetch_vcf: 206957 calls 79.079 user 1.569 sys 82.746 real
idle: 97 calls 0.088 user 0.000 sys 31.812 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 313083 calls 1065.683 user 3.738 sys 1102.198 real
overall: 4666593280 mem 2106.262 user 17.444 sys 71.040 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory