cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_BCAP-N1-BDNA-1_B23KGCJLT4_1.md.bam --read_filter QualCalFilter,table=1029_BCAP-N1-BDNA-1_B23KGCJLT4_1.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1029_BCAP-N1-BDNA-1_B23KGCJLT4_1.table.post --algo ReadWriter 1029_BCAP-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:188000001, elapsed 12.0s, est remaining 227.5s, peak mem 3549MB, user 283.4s, sys 4.8s, output queue size 145
progress 10% @chr2:90000001, elapsed 21.8s, est remaining 196.1s, peak mem 4209MB, user 599.8s, sys 6.8s, output queue size 48
progress 15% @chr2:201000001, elapsed 33.8s, est remaining 191.7s, peak mem 4311MB, user 925.8s, sys 8.4s, output queue size 203
progress 20% @chr3:178000001, elapsed 44.1s, est remaining 176.2s, peak mem 4338MB, user 1263.5s, sys 10.3s, output queue size 141
progress 25% @chr4:124000001, elapsed 53.2s, est remaining 159.6s, peak mem 4342MB, user 1547.7s, sys 11.4s, output queue size 302
progress 30% @chr5:106000001, elapsed 60.1s, est remaining 140.2s, peak mem 4351MB, user 1752.7s, sys 12.3s, output queue size 464
progress 35% @chr6:79000001, elapsed 68.8s, est remaining 127.8s, peak mem 4371MB, user 1988.6s, sys 13.3s, output queue size 625
progress 40% @chr7:56000001, elapsed 78.8s, est remaining 118.1s, peak mem 4410MB, user 2261.0s, sys 14.6s, output queue size 786
progress 45% @chr8:82000001, elapsed 89.5s, est remaining 109.4s, peak mem 4446MB, user 2625.6s, sys 15.8s, output queue size 204
progress 50% @chr9:39000001, elapsed 98.2s, est remaining 98.2s, peak mem 4476MB, user 2884.0s, sys 16.8s, output queue size 366
progress 55% @chr10:118000001, elapsed 108.4s, est remaining 88.7s, peak mem 4531MB, user 3196.7s, sys 17.8s, output queue size 348
progress 60% @chr12:1000001, elapsed 118.5s, est remaining 79.0s, peak mem 4533MB, user 3488.4s, sys 19.0s, output queue size 510
progress 65% @chr12:56000001, elapsed 128.7s, est remaining 69.3s, peak mem 4540MB, user 3781.9s, sys 20.0s, output queue size 672
progress 70% @chr14:86000001, elapsed 134.9s, est remaining 57.8s, peak mem 4540MB, user 3968.3s, sys 20.8s, output queue size 833
progress 75% @chr16:42000001, elapsed 145.2s, est remaining 48.4s, peak mem 4585MB, user 4307.6s, sys 21.9s, output queue size 461
progress 80% @chr18:10000001, elapsed 159.6s, est remaining 39.9s, peak mem 4585MB, user 4687.2s, sys 23.1s, output queue size 623
progress 85% @chr19:15000001, elapsed 172.1s, est remaining 30.4s, peak mem 4585MB, user 5150.7s, sys 24.6s, output queue size 351
progress 90% @chrX:38000001, elapsed 179.6s, est remaining 20.0s, peak mem 4617MB, user 5370.1s, sys 25.6s, output queue size 513
progress 95% @chrY:53000001, elapsed 184.0s, est remaining 9.7s, peak mem 4617MB, user 5496.3s, sys 26.2s, output queue size 675
progress 100% @chr22:23000001, elapsed 194.3s, est remaining 0.0s, peak mem 4638MB, user 5677.7s, sys 27.1s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 13403638266
output file size: 23070459045
reads: 258986832
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.016 real
ReadQualCal::delayed_init: 1 calls 0.006 user 0.003 sys 0.028 real
ReadQualCal::init: 1 calls 0.000 user 0.000 sys 0.008 real
advance: 3219322 calls 376.847 user 6.412 sys 389.145 real
done: 1 calls 0.526 user 0.429 sys 0.959 real
exec_no_coor: 1 calls 0.000 user 0.002 sys 0.012 real
execute: 1 calls 0.004 user 0.000 sys 194.602 real
fetch: 3219323 calls 13.621 user 0.325 sys 20.733 real
fetch_reads: 3219322 calls 58.170 user 0.618 sys 59.946 real
fetch_ref: 1410677 calls 4.944 user 1.030 sys 6.093 real
fetch_vcf: 1410677 calls 122.574 user 1.958 sys 125.347 real
idle: 7998 calls 3.562 user 0.049 sys 300.617 real
init: 1 calls 0.011 user 0.003 sys 0.035 real
update: 1480141 calls 1462.213 user 3.064 sys 1484.251 real
write: 3219323 calls 4011.094 user 9.594 sys 4041.285 real
overall: 4863897600 mem 5691.508 user 35.545 sys 197.108 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before 1029_BCAP-N1-BDNA-1_B23KGCJLT4_1.table --after 1029_BCAP-N1-BDNA-1_B23KGCJLT4_1.table.post 1029_BCAP-N1-BDNA-1_B23KGCJLT4_1.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.022 user 0.008 sys 0.040 real
done: 1 calls 0.072 user 0.008 sys 0.080 real
idle: 61 calls 0.001 user 0.000 sys 31.351 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 86794240 mem 0.085 user 0.042 sys 1.059 real