cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_F0L-N1-BDNA-1_B23KGCJLT4_1.md.bam --read_filter QualCalFilter,table=1029_F0L-N1-BDNA-1_B23KGCJLT4_1.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1029_F0L-N1-BDNA-1_B23KGCJLT4_1.table.post --algo ReadWriter 1029_F0L-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:187000001, elapsed 13.4s, est remaining 254.5s, peak mem 3868MB, user 333.6s, sys 5.3s, output queue size 52
progress 10% @chr2:68000001, elapsed 23.6s, est remaining 212.3s, peak mem 4967MB, user 666.6s, sys 7.1s, output queue size 48
progress 15% @chr3:18000001, elapsed 36.5s, est remaining 206.8s, peak mem 5497MB, user 1012.4s, sys 8.7s, output queue size 203
progress 20% @chr3:174000001, elapsed 46.8s, est remaining 187.2s, peak mem 5563MB, user 1338.7s, sys 10.1s, output queue size 364
progress 25% @chr4:136000001, elapsed 56.0s, est remaining 167.9s, peak mem 5584MB, user 1636.5s, sys 11.8s, output queue size 302
progress 30% @chr5:101000001, elapsed 63.2s, est remaining 147.4s, peak mem 5654MB, user 1862.3s, sys 12.7s, output queue size 464
progress 35% @chr6:79000001, elapsed 73.2s, est remaining 136.0s, peak mem 5657MB, user 2120.2s, sys 13.8s, output queue size 625
progress 40% @chr7:47000001, elapsed 84.6s, est remaining 126.9s, peak mem 5778MB, user 2432.9s, sys 14.9s, output queue size 786
progress 45% @chr8:79000001, elapsed 97.3s, est remaining 118.9s, peak mem 5806MB, user 2857.1s, sys 16.5s, output queue size 204
progress 50% @chr9:37000001, elapsed 107.5s, est remaining 107.5s, peak mem 5887MB, user 3153.4s, sys 17.6s, output queue size 366
progress 55% @chr10:99000001, elapsed 119.8s, est remaining 98.0s, peak mem 5898MB, user 3492.9s, sys 18.9s, output queue size 527
progress 60% @chr12:1000001, elapsed 132.6s, est remaining 88.4s, peak mem 5898MB, user 3909.7s, sys 20.3s, output queue size 510
progress 65% @chr13:23000001, elapsed 145.0s, est remaining 78.1s, peak mem 5898MB, user 4255.6s, sys 21.7s, output queue size 672
progress 70% @chr14:50000001, elapsed 152.5s, est remaining 65.4s, peak mem 5898MB, user 4496.4s, sys 22.7s, output queue size 833
progress 75% @chr16:42000001, elapsed 165.9s, est remaining 55.3s, peak mem 5968MB, user 4921.6s, sys 23.9s, output queue size 461
progress 80% @chr18:11000001, elapsed 185.6s, est remaining 46.4s, peak mem 5968MB, user 5441.5s, sys 25.5s, output queue size 623
progress 85% @chr19:42000001, elapsed 202.3s, est remaining 35.7s, peak mem 5968MB, user 6037.9s, sys 27.3s, output queue size 351
progress 90% @chrX:42000001, elapsed 213.8s, est remaining 23.8s, peak mem 6046MB, user 6391.6s, sys 28.5s, output queue size 513
progress 95% @chrY:53000001, elapsed 222.4s, est remaining 11.7s, peak mem 6067MB, user 6601.7s, sys 29.3s, output queue size 675
progress 100% @chrX:67000001, elapsed 237.1s, est remaining 0.0s, peak mem 6067MB, user 6925.4s, sys 30.8s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 20479246791
output file size: 35140083901
reads: 409336898
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.023 real
ReadQualCal::delayed_init: 1 calls 0.002 user 0.001 sys 0.025 real
ReadQualCal::init: 1 calls 0.009 user 0.001 sys 0.006 real
advance: 3219322 calls 467.917 user 7.946 sys 485.445 real
done: 1 calls 0.512 user 0.287 sys 0.804 real
exec_no_coor: 1 calls 0.004 user 0.003 sys 0.013 real
execute: 1 calls 0.005 user 0.000 sys 237.387 real
fetch: 3219323 calls 18.737 user 0.373 sys 28.076 real
fetch_reads: 3219322 calls 84.978 user 0.526 sys 86.254 real
fetch_ref: 1600970 calls 5.129 user 0.993 sys 6.556 real
fetch_vcf: 1600970 calls 100.972 user 1.644 sys 105.194 real
idle: 19404 calls 10.798 user 0.164 sys 357.128 real
init: 1 calls 0.005 user 0.001 sys 0.031 real
update: 1708382 calls 1584.204 user 3.059 sys 1625.731 real
write: 3219323 calls 5123.554 user 12.844 sys 5165.209 real
overall: 6362652672 mem 6948.280 user 41.432 sys 239.577 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before 1029_F0L-N1-BDNA-1_B23KGCJLT4_1.table --after 1029_F0L-N1-BDNA-1_B23KGCJLT4_1.table.post 1029_F0L-N1-BDNA-1_B23KGCJLT4_1.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.020 user 0.010 sys 0.042 real
done: 1 calls 0.060 user 0.010 sys 0.079 real
idle: 61 calls 0.002 user 0.000 sys 31.282 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 86806528 mem 0.108 user 0.024 sys 1.057 real