File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/2a516efcce6fb2a7062d0fecb919f0/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_3;chr10_74133927-74134264.bed)
Attempt

Content

View in new tab 
[2026-06-05T23:00:20.961003Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T23:00:20.968511Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T23:00:20.968536Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T23:00:20.968541Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T23:00:20.968545Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXiTXYiF'
[2026-06-05T23:00:20.968549Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T23:00:20.968554Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T23:00:20.968557Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T23:00:20.968561Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-05T23:00:20.968564Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T23:00:20.968568Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T23:00:20.968572Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T23:00:20.968575Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T23:00:20.968579Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T23:00:20.969243Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T23:00:20.969346Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T23:00:20.975073Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T23:00:20.975726Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T23:00:20.975979Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T23:00:20.976379Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T23:00:20.976651Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.977347Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.977441Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.977514Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.977641Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.977833Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.978190Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.978272Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T23:00:20.978459Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.978598Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.978666Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.979241Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.979606Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.981121Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.981440Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.981756Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T23:00:20.982033Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.982103Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.982214Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.982277Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.982467Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.982535Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.982671Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.982750Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.982865Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.982926Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.983278Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.983503Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.983685Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.984031Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.984141Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.984237Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.984355Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.984423Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.984531Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.984594Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.984701Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.984774Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.984904Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.984967Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.985106Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.985477Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.985596Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.985661Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.985768Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.985831Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.985944Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.986008Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.986171Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.986235Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.986342Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.986403Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.986525Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.986667Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.987161Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.987226Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.987336Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.987410Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.987515Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.987577Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.987685Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.987746Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.987856Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.987917Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.988023Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.988093Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.988361Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.988803Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.988916Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.988980Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.989087Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.989149Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.989253Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-05T23:00:20.989315Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-05T23:00:21.005268Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-05T23:00:21.006204Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:21.006297Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-05T23:00:21.007015Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T23:00:21.007193Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-05T23:00:21.007400Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T23:00:21.007702Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T23:00:21.007901Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-05T23:00:21.008191Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T23:00:21.008441Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T23:00:21.008755Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-05T23:00:21.009593Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-05T23:00:21.009839Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T23:00:21.010424Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-05T23:00:21.011064Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T23:00:21.012372Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-05T23:00:21.013481Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T23:00:21.013742Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-05T23:00:21.014234Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T23:00:21.015280Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T23:00:21.022268Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-05T23:00:21.024506Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-05T23:00:21.025639Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-05T23:00:21.030441Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-05T23:00:21.030885Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T23:00:21.033181Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T23:00:23.752846Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:23.753612Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T23:00:23.756789Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T23:00:29.470297Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:29.471148Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T23:00:29.474055Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T23:00:30.788460Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:30.789358Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-05T23:00:30.792017Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-05T23:00:31.053726Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:31.054526Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-05T23:00:31.057350Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-05T23:00:31.118588Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:31.119360Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-05T23:00:31.121999Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-05T23:00:36.685612Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:36.686410Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-05T23:00:36.689374Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-05T23:00:36.718797Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:36.719516Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T23:00:36.721767Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T23:00:53.940937Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:53.942198Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T23:00:53.945051Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T23:00:54.006506Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:54.007268Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-05T23:00:54.009825Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-05T23:00:56.226931Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:56.227736Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T23:00:56.230382Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T23:00:56.260029Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:56.260764Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-05T23:00:56.263138Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-05T23:00:56.292665Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:56.293326Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-05T23:00:56.296314Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-05T23:00:56.325556Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:56.326201Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-05T23:00:56.328954Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-05T23:00:57.292877Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:57.293653Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T23:00:57.296104Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T23:00:57.357778Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:57.358463Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-05T23:00:57.361115Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-05T23:00:58.876420Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:58.877240Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-05T23:00:58.879789Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-05T23:00:58.910545Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T23:00:58.911227Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-05T23:00:58.913828Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-05T23:01:01.175469Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-05T23:01:01.181633Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:01.181708Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:01.182434Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-05T23:01:01.182782Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-05T23:01:01.185621Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-05T23:01:01.186520Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-05T23:01:01.215017Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:01.215090Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:01.215696Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-05T23:01:01.216008Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-05T23:01:01.218419Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-05T23:01:01.219455Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-05T23:01:01.248463Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:01.248534Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:01.249118Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T23:01:01.249473Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-05T23:01:01.252298Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T23:01:01.253217Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-05T23:01:01.281439Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:01.282041Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T23:01:01.284581Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T23:01:01.313909Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:01.314521Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T23:01:01.317264Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T23:01:01.378632Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:01.379245Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T23:01:01.381886Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T23:01:01.411418Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:01.412013Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-05T23:01:01.414908Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-05T23:01:06.239303Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:06.240006Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-05T23:01:06.242825Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-05T23:01:06.271889Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:06.272490Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-05T23:01:06.275097Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-05T23:01:07.038922Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:07.039609Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T23:01:07.043086Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T23:01:08.558388Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:08.559317Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-05T23:01:08.561967Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-05T23:01:08.591322Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:08.592020Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-05T23:01:08.594744Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-05T23:01:13.017425Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:13.018109Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-05T23:01:13.021085Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-05T23:01:13.050242Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:13.050911Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-05T23:01:13.053839Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-05T23:01:13.114990Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:13.115577Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-05T23:01:13.118384Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-05T23:01:13.147613Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:13.148170Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T23:01:13.150806Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T23:01:13.212505Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:13.213065Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-05T23:01:13.215572Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-05T23:01:17.688637Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:17.689265Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T23:01:17.692407Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T23:01:17.753234Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:17.753940Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-05T23:01:17.756753Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-05T23:01:19.120725Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:19.121341Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-05T23:01:19.124591Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-05T23:01:19.153449Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:19.153984Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T23:01:19.156794Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T23:01:19.218064Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:19.218579Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T23:01:19.221545Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T23:01:19.282961Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:19.283449Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-05T23:01:19.286300Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-05T23:01:19.315590Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:19.316120Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T23:01:19.318771Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T23:01:19.348067Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:19.348569Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T23:01:19.351169Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T23:01:19.412439Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:19.412924Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T23:01:19.415451Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T23:01:19.444925Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:19.445413Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-05T23:01:19.447879Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-05T23:01:21.664542Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:21.665146Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T23:01:21.667790Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T23:01:21.697331Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:21.697876Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-05T23:01:21.700612Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-05T23:01:22.613993Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:22.614585Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-05T23:01:22.617318Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-05T23:01:22.646594Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:22.647089Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-05T23:01:22.649754Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-05T23:01:28.313088Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:28.313620Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T23:01:28.316437Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T23:01:28.377605Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:28.378111Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T23:01:28.381053Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T23:01:28.410136Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:28.410663Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-05T23:01:28.412941Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-05T23:01:28.442507Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:28.442990Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-05T23:01:28.445581Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-05T23:01:28.475179Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:28.475608Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T23:01:28.477947Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T23:01:29.641881Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:29.642408Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-05T23:01:29.645120Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-05T23:01:29.674379Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:29.674863Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T23:01:29.677614Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T23:01:29.706822Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:30.171651Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:30.172109Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-05T23:01:30.174748Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-05T23:01:30.203913Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:32.322730Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:32.323213Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-05T23:01:32.325892Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-05T23:01:32.355242Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:34.273400Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:34.273872Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-05T23:01:34.276933Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-05T23:01:34.338074Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:34.702694Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T23:01:34.703121Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T23:01:34.705882Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T23:01:34.735205Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T23:02:18.463535Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T23:02:18.464328Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-05T23:02:18.466931Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-05T23:02:18.496192Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T23:02:35.366337Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T23:02:35.367347Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-05T23:02:35.369729Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-05T23:02:35.399145Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T23:06:33.690777Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T23:06:33.691846Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T23:06:33.694550Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T23:06:33.723725Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T23:06:33.724076Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T23:06:33.724231Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T23:06:33.724523Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T23:06:33.724841Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T23:06:33.728776Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T23:06:33.729799Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T23:06:33.730877Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T23:06:33.756836Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T23:06:33.756905Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T23:06:33.757142Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T23:06:33.757401Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T23:06:33.759878Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T23:06:33.760966Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T23:06:33.761217Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T23:06:33.792877Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T23:06:33.792943Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T23:06:33.793163Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T23:06:33.795476Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T23:06:33.824967Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T23:06:39.439749Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T23:06:54.391423Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T23:06:54.391423Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] 
[2026-06-05T23:06:54.391423Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T23:06:54.391501Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] 
[2026-06-05T23:06:54.391514Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T23:06:54.391520Z] [nf-5e2a516efcce6fb2a7062d0fecb919f0-ea51e-v76ls] [596_1] [WorkflowRunner] Elapsed time for full workflow: 393 sec