cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_11H-N1-BDNA-1_B23KGCJLT4_1.md.bam --read_filter QualCalFilter,table=1029_11H-N1-BDNA-1_B23KGCJLT4_1.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1029_11H-N1-BDNA-1_B23KGCJLT4_1.table.post --algo ReadWriter 1029_11H-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:175000001, elapsed 14.4s, est remaining 273.1s, peak mem 3965MB, user 346.0s, sys 4.9s, output queue size 145
progress 10% @chr2:69000001, elapsed 25.3s, est remaining 227.6s, peak mem 4751MB, user 710.9s, sys 6.7s, output queue size 48
progress 15% @chr3:8000001, elapsed 37.8s, est remaining 214.1s, peak mem 4912MB, user 1073.9s, sys 8.4s, output queue size 122
progress 20% @chr3:176000001, elapsed 48.5s, est remaining 194.2s, peak mem 4957MB, user 1411.5s, sys 9.9s, output queue size 141
progress 25% @chr4:124000001, elapsed 58.2s, est remaining 174.6s, peak mem 4996MB, user 1704.1s, sys 11.0s, output queue size 302
progress 30% @chr5:101000001, elapsed 65.9s, est remaining 153.8s, peak mem 5037MB, user 1946.0s, sys 11.9s, output queue size 464
progress 35% @chr6:91000001, elapsed 76.6s, est remaining 142.3s, peak mem 5058MB, user 2211.1s, sys 13.1s, output queue size 625
progress 40% @chr7:65000001, elapsed 88.6s, est remaining 132.9s, peak mem 5131MB, user 2591.4s, sys 14.6s, output queue size 195
progress 45% @chr8:78000001, elapsed 101.3s, est remaining 123.8s, peak mem 5146MB, user 2972.5s, sys 15.9s, output queue size 204
progress 50% @chr9:88000001, elapsed 111.7s, est remaining 111.7s, peak mem 5250MB, user 3281.0s, sys 17.0s, output queue size 366
progress 55% @chr10:118000001, elapsed 124.8s, est remaining 102.1s, peak mem 5315MB, user 3671.7s, sys 18.4s, output queue size 348
progress 60% @chr11:117000001, elapsed 138.5s, est remaining 92.3s, peak mem 5315MB, user 4075.5s, sys 19.7s, output queue size 510
progress 65% @chr13:18000001, elapsed 151.2s, est remaining 81.4s, peak mem 5315MB, user 4474.9s, sys 21.0s, output queue size 672
progress 70% @chr14:50000001, elapsed 159.5s, est remaining 68.3s, peak mem 5315MB, user 4696.9s, sys 21.7s, output queue size 833
progress 75% @chr16:42000001, elapsed 173.0s, est remaining 57.7s, peak mem 5315MB, user 5137.3s, sys 23.0s, output queue size 461
progress 80% @chr18:9000001, elapsed 193.7s, est remaining 48.4s, peak mem 5337MB, user 5724.8s, sys 24.8s, output queue size 190
progress 85% @chr20:3000001, elapsed 211.5s, est remaining 37.3s, peak mem 5337MB, user 6322.0s, sys 26.7s, output queue size 351
progress 90% @chrX:34000001, elapsed 223.7s, est remaining 24.9s, peak mem 5424MB, user 6680.9s, sys 27.7s, output queue size 513
progress 95% @chrY:52000001, elapsed 232.4s, est remaining 12.2s, peak mem 5424MB, user 6979.8s, sys 28.7s, output queue size 212
progress 100% @chrX:67000001, elapsed 248.2s, est remaining 0.0s, peak mem 5424MB, user 7241.2s, sys 29.7s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 20521533170
output file size: 34892885539
reads: 437628298
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.015 real
ReadQualCal::delayed_init: 1 calls 0.000 user 0.000 sys 0.024 real
ReadQualCal::init: 1 calls 0.000 user 0.000 sys 0.006 real
advance: 3219322 calls 493.378 user 7.704 sys 514.607 real
done: 1 calls 0.459 user 0.602 sys 1.063 real
exec_no_coor: 1 calls 0.000 user 0.003 sys 0.006 real
execute: 1 calls 0.002 user 0.000 sys 248.508 real
fetch: 3219323 calls 22.240 user 0.341 sys 34.304 real
fetch_reads: 3219322 calls 89.096 user 0.441 sys 91.061 real
fetch_ref: 1640206 calls 5.078 user 1.162 sys 6.271 real
fetch_vcf: 1640206 calls 100.862 user 1.543 sys 105.832 real
idle: 18564 calls 7.377 user 0.091 sys 378.871 real
init: 1 calls 0.007 user 0.000 sys 0.031 real
update: 1773323 calls 1615.650 user 2.239 sys 1661.468 real
write: 3219323 calls 5381.183 user 12.509 sys 5428.320 real
overall: 5688111104 mem 7259.131 user 41.268 sys 250.721 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before 1029_11H-N1-BDNA-1_B23KGCJLT4_1.table --after 1029_11H-N1-BDNA-1_B23KGCJLT4_1.table.post 1029_11H-N1-BDNA-1_B23KGCJLT4_1.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.039 user 0.011 sys 0.042 real
done: 1 calls 0.059 user 0.021 sys 0.081 real
idle: 61 calls 0.002 user 0.000 sys 31.383 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 86777856 mem 0.088 user 0.044 sys 1.063 real