cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 659_bQZ-N1-BDNA-1_B23KGCJLT4_1.md.bam --read_filter QualCalFilter,table=659_bQZ-N1-BDNA-1_B23KGCJLT4_1.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 659_bQZ-N1-BDNA-1_B23KGCJLT4_1.table.post --algo ReadWriter 659_bQZ-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:187000001, elapsed 16.7s, est remaining 316.9s, peak mem 4345MB, user 396.4s, sys 4.7s, output queue size 145
progress 10% @chr2:46000001, elapsed 29.4s, est remaining 264.2s, peak mem 5288MB, user 819.2s, sys 6.9s, output queue size 48
progress 15% @chr2:172000001, elapsed 44.0s, est remaining 249.2s, peak mem 5504MB, user 1244.3s, sys 9.0s, output queue size 122
progress 20% @chr3:176000001, elapsed 56.1s, est remaining 224.5s, peak mem 5539MB, user 1632.6s, sys 10.6s, output queue size 141
progress 25% @chr4:98000001, elapsed 67.4s, est remaining 202.2s, peak mem 5553MB, user 1974.8s, sys 11.9s, output queue size 302
progress 30% @chr5:107000001, elapsed 76.1s, est remaining 177.6s, peak mem 5602MB, user 2234.0s, sys 13.0s, output queue size 464
progress 35% @chr6:92000001, elapsed 88.4s, est remaining 164.3s, peak mem 5670MB, user 2550.2s, sys 14.2s, output queue size 625
progress 40% @chr7:65000001, elapsed 102.0s, est remaining 153.0s, peak mem 5759MB, user 2983.4s, sys 15.8s, output queue size 195
progress 45% @chr8:79000001, elapsed 117.0s, est remaining 143.0s, peak mem 5767MB, user 3440.4s, sys 17.5s, output queue size 204
progress 50% @chr9:88000001, elapsed 128.7s, est remaining 128.7s, peak mem 5863MB, user 3776.7s, sys 18.6s, output queue size 366
progress 55% @chr10:118000001, elapsed 143.8s, est remaining 117.6s, peak mem 5943MB, user 4232.8s, sys 20.1s, output queue size 348
progress 60% @chr11:117000001, elapsed 159.6s, est remaining 106.4s, peak mem 5943MB, user 4695.3s, sys 21.6s, output queue size 510
progress 65% @chr13:18000001, elapsed 174.3s, est remaining 93.9s, peak mem 5951MB, user 5112.9s, sys 23.1s, output queue size 672
progress 70% @chr14:50000001, elapsed 183.7s, est remaining 78.7s, peak mem 5966MB, user 5411.0s, sys 24.3s, output queue size 833
progress 75% @chr16:42000001, elapsed 199.7s, est remaining 66.6s, peak mem 5978MB, user 5925.1s, sys 26.2s, output queue size 461
progress 80% @chr18:25000001, elapsed 224.1s, est remaining 56.0s, peak mem 6053MB, user 6620.0s, sys 28.3s, output queue size 190
progress 85% @chr20:3000001, elapsed 244.3s, est remaining 43.1s, peak mem 6053MB, user 7300.2s, sys 30.3s, output queue size 351
progress 90% @chrX:42000001, elapsed 258.5s, est remaining 28.7s, peak mem 6053MB, user 7713.8s, sys 31.5s, output queue size 513
progress 95% @chrY:53000001, elapsed 268.9s, est remaining 14.2s, peak mem 6107MB, user 8043.6s, sys 32.8s, output queue size 239
progress 100% @chrX:67000001, elapsed 287.6s, est remaining 0.0s, peak mem 6107MB, user 8370.1s, sys 34.1s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 25208241494
output file size: 42054708251
reads: 529230595
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.002 user 0.002 sys 0.015 real
ReadQualCal::delayed_init: 1 calls 0.001 user 0.000 sys 0.021 real
ReadQualCal::init: 1 calls 0.010 user 0.000 sys 0.006 real
advance: 3219322 calls 599.107 user 9.588 sys 621.869 real
done: 1 calls 0.503 user 0.429 sys 0.935 real
exec_no_coor: 1 calls 0.006 user 0.004 sys 0.003 real
execute: 1 calls 0.006 user 0.002 sys 287.969 real
fetch: 3219323 calls 28.572 user 0.444 sys 43.094 real
fetch_reads: 3219322 calls 108.310 user 0.582 sys 110.930 real
fetch_ref: 1637427 calls 4.776 user 1.126 sys 6.557 real
fetch_vcf: 1637427 calls 99.923 user 1.548 sys 103.545 real
idle: 22255 calls 7.671 user 0.110 sys 453.408 real
init: 1 calls 0.001 user 0.000 sys 0.027 real
update: 1795254 calls 1909.195 user 2.465 sys 1961.969 real
write: 3219323 calls 6237.582 user 14.736 sys 6300.245 real
overall: 6404382720 mem 8388.626 user 47.764 sys 290.448 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before 659_bQZ-N1-BDNA-1_B23KGCJLT4_1.table --after 659_bQZ-N1-BDNA-1_B23KGCJLT4_1.table.post 659_bQZ-N1-BDNA-1_B23KGCJLT4_1.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.030 user 0.000 sys 0.041 real
done: 1 calls 0.040 user 0.030 sys 0.078 real
idle: 61 calls 0.002 user 0.000 sys 31.386 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 85184512 mem 0.064 user 0.064 sys 1.061 real