A23MHWWLT4

MultiQC Report for DAQ. Includes data from all the QC tools in DAQ.

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Report generated on 2026-06-06, 01:13 UTC based on data in: /tmp/nxf.Jqsb0jNklH

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General Statistics

Showing ⁴³²/₄₃₂ rows and ¹⁸/₃₃ columns.

Sample Name	≥ 1X	≥ 5X	≥ 10X	≥ 30X	≥ 50X	Median	Mean Cov.	Min Cov.	Max Cov.	Mb Total Coverage Bases	Genome length	Fold Enrichment	Target Bases ≥ 30X	Insert Size	Mean Insert Size	Duplication	Error rate	Non-primary	Reads mapped	% Mapped	% Proper pairs	% MapQ 0 reads	Total seqs	Mean insert	% Duplication	% > Q30	Mb Q30 bases	Reads After Filtering	GC content	% PF	% Adapter	Mean R1 Length	Mean R2 Length
659_Kh-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	485X	911.7X	0.0X	36850.0X	34575.1Mb	37922265	43X	99%	335bp	365bp	56.9%	0.73%	0.0M	1148.6M	100.0%	99.1%	3.4%	1148.6M	391.5bp
659_Kh-T1-TDNA-1_A23MHWWLT4_1_S21_L001																									13.0%	89.0%	19318.0Mb	145.6M	47.1%	97.2%	5.5%	151.0bp	151.0bp
659_Kh-T1-TDNA-1_A23MHWWLT4_1_S21_L002																									11.9%	89.2%	19419.5Mb	146.1M	47.2%	97.1%	5.7%	151.0bp	151.0bp
659_Kh-T1-TDNA-1_A23MHWWLT4_1_S21_L003																									11.6%	88.9%	18915.5Mb	142.9M	47.2%	97.1%	5.7%	151.0bp	151.0bp
659_Kh-T1-TDNA-1_A23MHWWLT4_1_S21_L004																									10.4%	88.3%	18757.4Mb	142.6M	47.2%	97.0%	6.0%	151.0bp	151.0bp
659_Kh-T1-TDNA-1_A23MHWWLT4_1_S21_L005																									10.2%	87.7%	18343.4Mb	140.4M	47.1%	96.9%	5.9%	151.0bp	151.0bp
659_Kh-T1-TDNA-1_A23MHWWLT4_1_S21_L006																									10.4%	87.9%	18189.4Mb	139.0M	47.3%	97.0%	5.9%	151.0bp	151.0bp
659_Kh-T1-TDNA-1_A23MHWWLT4_1_S21_L007																									11.3%	88.3%	18878.9Mb	143.5M	47.1%	97.0%	5.7%	151.0bp	151.0bp
659_Kh-T1-TDNA-1_A23MHWWLT4_1_S21_L008																									13.1%	88.8%	19645.7Mb	148.4M	47.1%	97.2%	5.4%	151.0bp	151.0bp
659_Lx-T1-TDNA-1_A23MHWWLT4_1	14.0%	0.0%	0.0%	0.0%	0.0%	0X	0.2X	0.0X	42.0X	6.2Mb	37922265	45X	0%	168bp	189bp	71.2%	0.50%	0.0M	0.5M	99.7%	95.0%	7.4%	0.5M	195.1bp
659_Lx-T1-TDNA-1_A23MHWWLT4_1_S15_L001																									9.1%	93.5%	8.3Mb	0.1M	52.2%	11.6%	48.5%	151.0bp	151.0bp
659_Lx-T1-TDNA-1_A23MHWWLT4_1_S15_L002																									9.7%	94.0%	8.6Mb	0.1M	52.2%	11.4%	48.5%	151.0bp	151.0bp
659_Lx-T1-TDNA-1_A23MHWWLT4_1_S15_L003																									8.8%	93.6%	8.5Mb	0.1M	52.1%	11.5%	48.5%	151.0bp	151.0bp
659_Lx-T1-TDNA-1_A23MHWWLT4_1_S15_L004																									7.8%	93.4%	8.4Mb	0.1M	52.3%	11.1%	48.6%	151.0bp	151.0bp
659_Lx-T1-TDNA-1_A23MHWWLT4_1_S15_L005																									7.3%	93.0%	8.1Mb	0.1M	52.1%	11.3%	48.5%	151.0bp	151.0bp
659_Lx-T1-TDNA-1_A23MHWWLT4_1_S15_L006																									7.7%	93.0%	8.1Mb	0.1M	52.2%	11.1%	48.6%	151.0bp	151.0bp
659_Lx-T1-TDNA-1_A23MHWWLT4_1_S15_L007																									8.4%	93.3%	8.3Mb	0.1M	52.0%	11.4%	48.4%	151.0bp	151.0bp
659_Lx-T1-TDNA-1_A23MHWWLT4_1_S15_L008																									9.1%	93.4%	8.3Mb	0.1M	52.0%	11.5%	48.4%	151.0bp	151.0bp
659_bR4-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	534X	906.8X	0.0X	29336.0X	34388.2Mb	37922265	44X	99%	304bp	331bp	66.9%	0.65%	0.0M	1626.2M	100.0%	99.3%	3.4%	1626.2M	354.3bp
659_bR4-T1-TDNA-1_A23MHWWLT4_1_S38_L001																									15.1%	90.1%	27775.9Mb	208.2M	45.7%	97.9%	8.4%	151.0bp	151.0bp
659_bR4-T1-TDNA-1_A23MHWWLT4_1_S38_L002																									14.2%	90.4%	27858.6Mb	208.4M	45.8%	97.9%	8.8%	151.0bp	151.0bp
659_bR4-T1-TDNA-1_A23MHWWLT4_1_S38_L003																									13.7%	90.0%	27010.3Mb	203.0M	45.8%	97.9%	8.9%	151.0bp	151.0bp
659_bR4-T1-TDNA-1_A23MHWWLT4_1_S38_L004																									12.4%	89.5%	26444.8Mb	199.9M	45.8%	97.8%	9.2%	151.0bp	151.0bp
659_bR4-T1-TDNA-1_A23MHWWLT4_1_S38_L005																									12.0%	88.9%	25973.0Mb	197.6M	45.7%	97.7%	9.0%	151.0bp	151.0bp
659_bR4-T1-TDNA-1_A23MHWWLT4_1_S38_L006																									12.1%	89.0%	25752.9Mb	195.7M	45.9%	97.8%	9.1%	151.0bp	151.0bp
659_bR4-T1-TDNA-1_A23MHWWLT4_1_S38_L007																									13.3%	89.5%	26874.8Mb	203.0M	45.7%	97.8%	8.8%	151.0bp	151.0bp
659_bR4-T1-TDNA-1_A23MHWWLT4_1_S38_L008																									15.2%	89.9%	28027.1Mb	210.5M	45.7%	98.0%	8.4%	151.0bp	151.0bp
659_bgw-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	478X	679.5X	0.0X	21042.0X	25767.2Mb	37922265	45X	99%	232bp	260bp	64.4%	0.52%	0.0M	1291.4M	100.0%	99.4%	3.8%	1291.4M	278.6bp
659_bgw-T1-TDNA-1_A23MHWWLT4_1_S11_L001																									14.2%	92.7%	21750.0Mb	161.9M	46.2%	98.8%	17.0%	151.0bp	151.0bp
659_bgw-T1-TDNA-1_A23MHWWLT4_1_S11_L002																									13.7%	93.0%	22248.6Mb	165.1M	46.3%	98.8%	17.4%	151.0bp	151.0bp
659_bgw-T1-TDNA-1_A23MHWWLT4_1_S11_L003																									13.1%	92.6%	21635.7Mb	161.4M	46.3%	98.8%	17.6%	151.0bp	151.0bp
659_bgw-T1-TDNA-1_A23MHWWLT4_1_S11_L004																									12.3%	92.3%	21542.1Mb	161.3M	46.3%	98.8%	17.9%	151.0bp	151.0bp
659_bgw-T1-TDNA-1_A23MHWWLT4_1_S11_L005																									11.9%	91.7%	21122.6Mb	159.1M	46.3%	98.7%	17.6%	151.0bp	151.0bp
659_bgw-T1-TDNA-1_A23MHWWLT4_1_S11_L006																									11.8%	91.9%	20857.2Mb	157.0M	46.4%	98.8%	17.9%	151.0bp	151.0bp
659_bgw-T1-TDNA-1_A23MHWWLT4_1_S11_L007																									12.8%	92.2%	21572.8Mb	161.5M	46.2%	98.8%	17.3%	151.0bp	151.0bp
659_bgw-T1-TDNA-1_A23MHWWLT4_1_S11_L008																									14.1%	92.4%	21981.0Mb	164.0M	46.2%	98.8%	16.9%	151.0bp	151.0bp
659_cAd-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	434X	645.8X	0.0X	20122.0X	24491.1Mb	37922265	45X	99%	263bp	286bp	65.6%	0.54%	0.0M	1226.3M	100.0%	99.5%	3.3%	1226.3M	312.2bp
659_cAd-T1-TDNA-1_A23MHWWLT4_1_S44_L001																									15.6%	91.9%	20936.1Mb	155.4M	44.5%	98.6%	12.7%	151.0bp	151.0bp
659_cAd-T1-TDNA-1_A23MHWWLT4_1_S44_L002																									14.8%	92.2%	21152.5Mb	156.6M	44.6%	98.6%	13.2%	151.0bp	151.0bp
659_cAd-T1-TDNA-1_A23MHWWLT4_1_S44_L003																									14.2%	91.8%	20525.7Mb	152.7M	44.6%	98.6%	13.3%	151.0bp	151.0bp
659_cAd-T1-TDNA-1_A23MHWWLT4_1_S44_L004																									13.1%	91.4%	20360.5Mb	152.2M	44.6%	98.6%	13.6%	151.0bp	151.0bp
659_cAd-T1-TDNA-1_A23MHWWLT4_1_S44_L005																									12.7%	90.8%	19999.9Mb	150.4M	44.5%	98.5%	13.3%	151.0bp	151.0bp
659_cAd-T1-TDNA-1_A23MHWWLT4_1_S44_L006																									12.7%	90.9%	19762.7Mb	148.5M	44.7%	98.5%	13.5%	151.0bp	151.0bp
659_cAd-T1-TDNA-1_A23MHWWLT4_1_S44_L007																									13.9%	91.3%	20527.8Mb	153.4M	44.5%	98.5%	13.1%	151.0bp	151.0bp
659_cAd-T1-TDNA-1_A23MHWWLT4_1_S44_L008																									15.6%	91.7%	21131.7Mb	157.2M	44.5%	98.6%	12.7%	151.0bp	151.0bp
659_cVw-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	592X	1058.4X	0.0X	42634.0X	40136.0Mb	37922265	44X	99%	287bp	316bp	61.3%	0.60%	0.0M	1576.9M	100.0%	99.4%	3.5%	1576.9M	342.1bp
659_cVw-T1-TDNA-1_A23MHWWLT4_1_S39_L001																									14.4%	90.7%	26807.8Mb	200.4M	46.0%	98.1%	10.2%	151.0bp	151.0bp
659_cVw-T1-TDNA-1_A23MHWWLT4_1_S39_L002																									13.5%	91.0%	26947.0Mb	201.0M	46.1%	98.1%	10.6%	151.0bp	151.0bp
659_cVw-T1-TDNA-1_A23MHWWLT4_1_S39_L003																									13.1%	90.6%	26088.6Mb	195.5M	46.1%	98.0%	10.6%	151.0bp	151.0bp
659_cVw-T1-TDNA-1_A23MHWWLT4_1_S39_L004																									11.9%	90.1%	26328.0Mb	198.4M	46.1%	98.0%	11.0%	151.0bp	151.0bp
659_cVw-T1-TDNA-1_A23MHWWLT4_1_S39_L005																									11.6%	89.5%	25340.7Mb	192.2M	46.0%	97.9%	10.7%	151.0bp	151.0bp
659_cVw-T1-TDNA-1_A23MHWWLT4_1_S39_L006																									11.7%	89.7%	25112.8Mb	190.2M	46.2%	97.9%	10.9%	151.0bp	151.0bp
659_cVw-T1-TDNA-1_A23MHWWLT4_1_S39_L007																									12.8%	90.1%	26065.3Mb	196.3M	46.0%	97.9%	10.5%	151.0bp	151.0bp
659_cVw-T1-TDNA-1_A23MHWWLT4_1_S39_L008																									14.5%	90.5%	27096.4Mb	203.0M	46.1%	98.1%	10.1%	151.0bp	151.0bp
659_cfy-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	613X	1027.7X	0.0X	44803.0X	38974.2Mb	37922265	45X	99%	248bp	274bp	56.0%	0.53%	0.0M	1403.5M	100.0%	99.5%	3.7%	1403.5M	293.7bp
659_cfy-T1-TDNA-1_A23MHWWLT4_1_S32_L001																									12.5%	92.0%	23401.5Mb	174.4M	46.6%	98.8%	14.7%	151.0bp	151.0bp
659_cfy-T1-TDNA-1_A23MHWWLT4_1_S32_L002																									11.9%	92.4%	24020.3Mb	178.4M	46.7%	98.8%	15.2%	151.0bp	151.0bp
659_cfy-T1-TDNA-1_A23MHWWLT4_1_S32_L003																									11.5%	92.0%	23517.7Mb	175.5M	46.7%	98.7%	15.3%	151.0bp	151.0bp
659_cfy-T1-TDNA-1_A23MHWWLT4_1_S32_L004																									10.5%	91.6%	23373.6Mb	175.3M	46.7%	98.7%	15.6%	151.0bp	151.0bp
659_cfy-T1-TDNA-1_A23MHWWLT4_1_S32_L005																									10.3%	91.0%	23018.8Mb	173.7M	46.6%	98.7%	15.3%	151.0bp	151.0bp
659_cfy-T1-TDNA-1_A23MHWWLT4_1_S32_L006																									10.3%	91.1%	22709.9Mb	171.2M	46.8%	98.7%	15.5%	151.0bp	151.0bp
659_cfy-T1-TDNA-1_A23MHWWLT4_1_S32_L007																									11.3%	91.5%	23588.8Mb	176.9M	46.6%	98.7%	15.0%	151.0bp	151.0bp
659_cfy-T1-TDNA-1_A23MHWWLT4_1_S32_L008																									12.7%	91.8%	23842.0Mb	178.0M	46.6%	98.8%	14.6%	151.0bp	151.0bp
659_cuO-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	99.0%	92.0%	65.0%	60X	72.0X	0.0X	2308.0X	2732.2Mb	37922265	48X	93%	184bp	203bp	66.4%	0.44%	0.0M	176.3M	100.0%	99.4%	4.6%	176.3M	216.3bp
659_cuO-T1-TDNA-1_A23MHWWLT4_1_S8_L001																									13.3%	93.8%	2825.8Mb	21.8M	46.7%	97.8%	30.4%	151.0bp	151.0bp
659_cuO-T1-TDNA-1_A23MHWWLT4_1_S8_L002																									13.3%	94.2%	2925.9Mb	22.5M	46.7%	97.8%	30.8%	151.0bp	151.0bp
659_cuO-T1-TDNA-1_A23MHWWLT4_1_S8_L003																									12.6%	93.8%	2863.7Mb	22.1M	46.7%	97.8%	30.9%	151.0bp	151.0bp
659_cuO-T1-TDNA-1_A23MHWWLT4_1_S8_L004																									11.9%	93.6%	2864.8Mb	22.2M	46.8%	97.7%	31.3%	151.0bp	151.0bp
659_cuO-T1-TDNA-1_A23MHWWLT4_1_S8_L005																									11.4%	93.0%	2810.6Mb	21.9M	46.7%	97.7%	30.9%	151.0bp	151.0bp
659_cuO-T1-TDNA-1_A23MHWWLT4_1_S8_L006																									11.3%	93.1%	2788.8Mb	21.7M	46.8%	97.7%	31.3%	151.0bp	151.0bp
659_cuO-T1-TDNA-1_A23MHWWLT4_1_S8_L007																									12.2%	93.5%	2867.1Mb	22.2M	46.7%	97.7%	30.6%	151.0bp	151.0bp
659_cuO-T1-TDNA-1_A23MHWWLT4_1_S8_L008																									13.2%	93.6%	2867.0Mb	22.1M	46.7%	97.8%	30.3%	151.0bp	151.0bp
659_d0M-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	504X	824.4X	0.0X	23564.0X	31263.6Mb	37922265	44X	99%	282bp	313bp	60.4%	0.60%	0.0M	1236.2M	100.0%	99.2%	3.1%	1236.2M	342.5bp
659_d0M-T1-TDNA-1_A23MHWWLT4_1_S20_L001																									14.5%	90.9%	20960.9Mb	155.8M	46.6%	98.0%	8.8%	151.0bp	151.0bp
659_d0M-T1-TDNA-1_A23MHWWLT4_1_S20_L002																									13.6%	91.3%	21189.5Mb	157.1M	46.6%	98.0%	9.1%	151.0bp	151.0bp
659_d0M-T1-TDNA-1_A23MHWWLT4_1_S20_L003																									13.2%	90.9%	20607.7Mb	153.5M	46.6%	98.0%	9.2%	151.0bp	151.0bp
659_d0M-T1-TDNA-1_A23MHWWLT4_1_S20_L004																									12.1%	90.5%	20600.1Mb	154.2M	46.7%	97.9%	9.5%	151.0bp	151.0bp
659_d0M-T1-TDNA-1_A23MHWWLT4_1_S20_L005																									11.8%	89.8%	20176.1Mb	152.0M	46.6%	97.8%	9.2%	151.0bp	151.0bp
659_d0M-T1-TDNA-1_A23MHWWLT4_1_S20_L006																									11.8%	90.0%	19967.3Mb	150.2M	46.8%	97.9%	9.3%	151.0bp	151.0bp
659_d0M-T1-TDNA-1_A23MHWWLT4_1_S20_L007																									12.9%	90.4%	20676.6Mb	154.8M	46.6%	97.9%	9.0%	151.0bp	151.0bp
659_d0M-T1-TDNA-1_A23MHWWLT4_1_S20_L008																									14.6%	90.7%	21288.2Mb	158.6M	46.6%	98.0%	8.7%	151.0bp	151.0bp
659_dm4-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	395X	493.5X	0.0X	24304.0X	18714.4Mb	37922265	48X	99%	153bp	168bp	60.5%	0.40%	0.0M	1096.6M	100.0%	99.3%	6.2%	1096.6M	170.4bp
659_dm4-T1-TDNA-1_A23MHWWLT4_1_S10_L001																									11.8%	95.3%	17069.3Mb	134.6M	47.8%	99.3%	46.0%	151.0bp	151.0bp
659_dm4-T1-TDNA-1_A23MHWWLT4_1_S10_L002																									11.9%	95.6%	17795.2Mb	140.0M	47.8%	99.3%	46.2%	151.0bp	151.0bp
659_dm4-T1-TDNA-1_A23MHWWLT4_1_S10_L003																									11.3%	95.3%	17356.6Mb	137.0M	47.9%	99.3%	46.4%	151.0bp	151.0bp
659_dm4-T1-TDNA-1_A23MHWWLT4_1_S10_L004																									11.1%	95.2%	17682.8Mb	140.0M	47.9%	99.3%	46.8%	151.0bp	151.0bp
659_dm4-T1-TDNA-1_A23MHWWLT4_1_S10_L005																									10.6%	94.7%	17139.2Mb	136.2M	47.8%	99.3%	46.4%	151.0bp	151.0bp
659_dm4-T1-TDNA-1_A23MHWWLT4_1_S10_L006																									10.5%	94.7%	17080.5Mb	135.8M	47.9%	99.3%	46.7%	151.0bp	151.0bp
659_dm4-T1-TDNA-1_A23MHWWLT4_1_S10_L007																									11.0%	95.0%	17301.3Mb	136.8M	47.8%	99.3%	46.0%	151.0bp	151.0bp
659_dm4-T1-TDNA-1_A23MHWWLT4_1_S10_L008																									11.8%	95.1%	17248.5Mb	136.2M	47.8%	99.3%	45.8%	151.0bp	151.0bp
659_eKx-T1-TDNA-1_A23MHWWLT4_1	7.0%	0.0%	0.0%	0.0%	0.0%	0X	0.1X	0.0X	22.0X	2.9Mb	37922265	44X	0%	206bp	231bp	72.0%	0.57%	0.0M	0.2M	99.4%	92.2%	7.2%	0.2M	234.9bp
659_eKx-T1-TDNA-1_A23MHWWLT4_1_S12_L001																									6.2%	91.6%	3.7Mb	0.0M	51.6%	6.0%	48.5%	151.0bp	151.0bp
659_eKx-T1-TDNA-1_A23MHWWLT4_1_S12_L002																									6.7%	91.7%	3.8Mb	0.0M	51.9%	6.1%	48.5%	151.0bp	151.0bp
659_eKx-T1-TDNA-1_A23MHWWLT4_1_S12_L003																									5.6%	91.4%	3.6Mb	0.0M	51.4%	6.0%	48.5%	151.0bp	151.0bp
659_eKx-T1-TDNA-1_A23MHWWLT4_1_S12_L004																									4.7%	91.3%	3.8Mb	0.0M	51.9%	5.8%	48.6%	151.0bp	151.0bp
659_eKx-T1-TDNA-1_A23MHWWLT4_1_S12_L005																									4.2%	90.8%	3.6Mb	0.0M	51.5%	6.0%	48.5%	151.0bp	151.0bp
659_eKx-T1-TDNA-1_A23MHWWLT4_1_S12_L006																									5.0%	90.5%	3.5Mb	0.0M	51.7%	5.8%	48.6%	151.0bp	151.0bp
659_eKx-T1-TDNA-1_A23MHWWLT4_1_S12_L007																									5.8%	91.2%	3.6Mb	0.0M	51.8%	6.1%	48.5%	151.0bp	151.0bp
659_eKx-T1-TDNA-1_A23MHWWLT4_1_S12_L008																									6.3%	91.2%	3.7Mb	0.0M	51.7%	6.0%	48.5%	151.0bp	151.0bp
1029_BCAN-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	99.0%	96.0%	131X	158.3X	0.0X	5230.0X	6002.9Mb	37922265	41X	98%	111bp	121bp	53.8%	0.59%	0.0M	525.1M	100.0%	98.3%	14.0%	525.1M	122.1bp
1029_BCAN-T1-TDNA-1_A23MHWWLT4_1_S29_L001																									6.3%	95.2%	6999.7Mb	63.7M	48.8%	99.0%	74.7%	151.0bp	151.0bp
1029_BCAN-T1-TDNA-1_A23MHWWLT4_1_S29_L002																									6.5%	95.5%	7345.4Mb	66.7M	48.8%	99.0%	74.8%	151.0bp	151.0bp
1029_BCAN-T1-TDNA-1_A23MHWWLT4_1_S29_L003																									6.2%	95.2%	7233.9Mb	65.9M	48.8%	99.0%	74.9%	151.0bp	151.0bp
1029_BCAN-T1-TDNA-1_A23MHWWLT4_1_S29_L004																									6.1%	95.1%	7409.2Mb	67.6M	48.9%	99.1%	75.1%	151.0bp	151.0bp
1029_BCAN-T1-TDNA-1_A23MHWWLT4_1_S29_L005																									5.7%	94.7%	7147.4Mb	65.5M	48.8%	99.0%	74.9%	151.0bp	151.0bp
1029_BCAN-T1-TDNA-1_A23MHWWLT4_1_S29_L006																									5.7%	94.7%	7156.1Mb	65.6M	48.9%	99.0%	75.1%	151.0bp	151.0bp
1029_BCAN-T1-TDNA-1_A23MHWWLT4_1_S29_L007																									5.9%	95.0%	7181.8Mb	65.5M	48.8%	99.0%	74.7%	151.0bp	151.0bp
1029_BCAN-T1-TDNA-1_A23MHWWLT4_1_S29_L008																									6.2%	95.0%	7081.0Mb	64.6M	48.9%	99.0%	74.7%	151.0bp	151.0bp
1029_BICJ-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	99.0%	99.0%	396X	550.3X	0.0X	17005.0X	20868.7Mb	37922265	46X	99%	169bp	189bp	55.2%	0.44%	0.0M	980.3M	100.0%	98.7%	5.9%	980.3M	198.8bp
1029_BICJ-T1-TDNA-1_A23MHWWLT4_1_S22_L001																									11.5%	94.9%	15682.7Mb	119.9M	50.8%	99.2%	35.6%	151.0bp	151.0bp
1029_BICJ-T1-TDNA-1_A23MHWWLT4_1_S22_L002																									11.4%	95.2%	16285.9Mb	124.3M	50.8%	99.2%	36.0%	151.0bp	151.0bp
1029_BICJ-T1-TDNA-1_A23MHWWLT4_1_S22_L003																									10.9%	94.9%	15938.5Mb	122.0M	50.9%	99.2%	36.1%	151.0bp	151.0bp
1029_BICJ-T1-TDNA-1_A23MHWWLT4_1_S22_L004																									10.5%	94.7%	16322.9Mb	125.4M	50.9%	99.2%	36.6%	151.0bp	151.0bp
1029_BICJ-T1-TDNA-1_A23MHWWLT4_1_S22_L005																									10.2%	94.2%	15832.8Mb	122.1M	50.8%	99.2%	36.1%	151.0bp	151.0bp
1029_BICJ-T1-TDNA-1_A23MHWWLT4_1_S22_L006																									10.1%	94.3%	15754.3Mb	121.5M	50.9%	99.2%	36.5%	151.0bp	151.0bp
1029_BICJ-T1-TDNA-1_A23MHWWLT4_1_S22_L007																									10.8%	94.6%	15988.2Mb	122.7M	50.8%	99.2%	35.8%	151.0bp	151.0bp
1029_BICJ-T1-TDNA-1_A23MHWWLT4_1_S22_L008																									11.7%	94.7%	15982.6Mb	122.3M	50.8%	99.3%	35.4%	151.0bp	151.0bp
1029_FRC-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	517X	724.7X	0.0X	25405.0X	27481.3Mb	37922265	44X	99%	243bp	273bp	65.0%	0.56%	0.0M	1419.9M	100.0%	98.8%	4.3%	1419.9M	297.3bp
1029_FRC-T1-TDNA-1_A23MHWWLT4_1_S35_L001																									14.4%	91.8%	23970.3Mb	180.3M	48.1%	98.5%	16.8%	151.0bp	151.0bp
1029_FRC-T1-TDNA-1_A23MHWWLT4_1_S35_L002																									13.8%	92.2%	24273.8Mb	182.2M	48.1%	98.6%	17.3%	151.0bp	151.0bp
1029_FRC-T1-TDNA-1_A23MHWWLT4_1_S35_L003																									13.2%	91.8%	23377.4Mb	176.2M	48.1%	98.5%	17.3%	151.0bp	151.0bp
1029_FRC-T1-TDNA-1_A23MHWWLT4_1_S35_L004																									12.2%	91.5%	23474.5Mb	177.9M	48.2%	98.5%	17.9%	151.0bp	151.0bp
1029_FRC-T1-TDNA-1_A23MHWWLT4_1_S35_L005																									11.8%	90.8%	22728.6Mb	173.3M	48.1%	98.4%	17.5%	151.0bp	151.0bp
1029_FRC-T1-TDNA-1_A23MHWWLT4_1_S35_L006																									11.8%	91.0%	22516.0Mb	171.5M	48.2%	98.5%	17.7%	151.0bp	151.0bp
1029_FRC-T1-TDNA-1_A23MHWWLT4_1_S35_L007																									12.8%	91.3%	23297.8Mb	176.4M	48.1%	98.5%	17.1%	151.0bp	151.0bp
1029_FRC-T1-TDNA-1_A23MHWWLT4_1_S35_L008																									14.4%	91.6%	24156.8Mb	182.1M	48.1%	98.6%	16.7%	151.0bp	151.0bp
1029_FZX-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	556X	847.2X	0.0X	27611.0X	32127.6Mb	37922265	42X	99%	286bp	315bp	58.9%	0.64%	0.0M	1266.1M	100.0%	98.5%	4.0%	1266.1M	344.3bp
1029_FZX-T1-TDNA-1_A23MHWWLT4_1_S36_L001																									13.7%	90.5%	21098.2Mb	158.8M	49.4%	97.9%	11.5%	151.0bp	151.0bp
1029_FZX-T1-TDNA-1_A23MHWWLT4_1_S36_L002																									12.8%	90.8%	21384.4Mb	160.7M	49.5%	97.9%	11.9%	151.0bp	151.0bp
1029_FZX-T1-TDNA-1_A23MHWWLT4_1_S36_L003																									12.5%	90.4%	20950.3Mb	158.1M	49.5%	97.8%	12.0%	151.0bp	151.0bp
1029_FZX-T1-TDNA-1_A23MHWWLT4_1_S36_L004																									11.3%	90.0%	20666.8Mb	156.8M	49.5%	97.7%	12.3%	151.0bp	151.0bp
1029_FZX-T1-TDNA-1_A23MHWWLT4_1_S36_L005																									11.1%	89.4%	20409.2Mb	155.8M	49.4%	97.7%	12.1%	151.0bp	151.0bp
1029_FZX-T1-TDNA-1_A23MHWWLT4_1_S36_L006																									11.2%	89.5%	20284.0Mb	154.7M	49.6%	97.7%	12.2%	151.0bp	151.0bp
1029_FZX-T1-TDNA-1_A23MHWWLT4_1_S36_L007																									12.2%	89.9%	20962.5Mb	159.0M	49.4%	97.7%	11.8%	151.0bp	151.0bp
1029_FZX-T1-TDNA-1_A23MHWWLT4_1_S36_L008																									13.9%	90.3%	21505.3Mb	162.2M	49.5%	97.9%	11.4%	151.0bp	151.0bp
1029_HTI-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	612X	863.2X	0.0X	39210.0X	32732.9Mb	37922265	45X	99%	212bp	237bp	58.9%	0.51%	0.0M	1448.6M	100.0%	98.9%	4.9%	1448.6M	251.0bp
1029_HTI-T1-TDNA-1_A23MHWWLT4_1_S23_L001																									12.0%	93.0%	24141.5Mb	181.1M	49.6%	99.0%	22.3%	151.0bp	151.0bp
1029_HTI-T1-TDNA-1_A23MHWWLT4_1_S23_L002																									11.7%	93.4%	24782.2Mb	185.4M	49.7%	99.0%	22.7%	151.0bp	151.0bp
1029_HTI-T1-TDNA-1_A23MHWWLT4_1_S23_L003																									11.1%	93.0%	24114.7Mb	181.2M	49.7%	99.0%	22.8%	151.0bp	151.0bp
1029_HTI-T1-TDNA-1_A23MHWWLT4_1_S23_L004																									10.4%	92.7%	24070.6Mb	181.6M	49.7%	99.0%	23.2%	151.0bp	151.0bp
1029_HTI-T1-TDNA-1_A23MHWWLT4_1_S23_L005																									10.1%	92.1%	23489.7Mb	178.3M	49.6%	98.9%	22.9%	151.0bp	151.0bp
1029_HTI-T1-TDNA-1_A23MHWWLT4_1_S23_L006																									10.0%	92.2%	23324.5Mb	176.9M	49.8%	98.9%	23.1%	151.0bp	151.0bp
1029_HTI-T1-TDNA-1_A23MHWWLT4_1_S23_L007																									10.9%	92.6%	23981.8Mb	180.9M	49.6%	98.9%	22.5%	151.0bp	151.0bp
1029_HTI-T1-TDNA-1_A23MHWWLT4_1_S23_L008																									12.0%	92.8%	24360.1Mb	183.2M	49.6%	99.0%	22.2%	151.0bp	151.0bp
1029_I9B-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	587X	884.9X	0.0X	51711.0X	33557.2Mb	37922265	43X	99%	262bp	292bp	63.2%	0.60%	0.0M	1544.4M	100.0%	98.8%	4.2%	1544.4M	312.5bp
1029_I9B-T1-TDNA-1_A23MHWWLT4_1_S27_L001																									12.9%	91.0%	25964.9Mb	195.9M	48.3%	98.3%	14.8%	151.0bp	151.0bp
1029_I9B-T1-TDNA-1_A23MHWWLT4_1_S27_L002																									12.3%	91.4%	26335.4Mb	198.1M	48.4%	98.3%	15.3%	151.0bp	151.0bp
1029_I9B-T1-TDNA-1_A23MHWWLT4_1_S27_L003																									11.8%	91.0%	25553.4Mb	193.2M	48.4%	98.2%	15.4%	151.0bp	151.0bp
1029_I9B-T1-TDNA-1_A23MHWWLT4_1_S27_L004																									10.8%	90.6%	25124.7Mb	191.0M	48.5%	98.2%	15.8%	151.0bp	151.0bp
1029_I9B-T1-TDNA-1_A23MHWWLT4_1_S27_L005																									10.5%	90.0%	24650.7Mb	188.6M	48.4%	98.1%	15.5%	151.0bp	151.0bp
1029_I9B-T1-TDNA-1_A23MHWWLT4_1_S27_L006																									10.5%	90.1%	24452.4Mb	186.8M	48.5%	98.2%	15.7%	151.0bp	151.0bp
1029_I9B-T1-TDNA-1_A23MHWWLT4_1_S27_L007																									11.5%	90.5%	25390.4Mb	192.9M	48.4%	98.2%	15.2%	151.0bp	151.0bp
1029_I9B-T1-TDNA-1_A23MHWWLT4_1_S27_L008																									12.9%	90.8%	26156.7Mb	197.8M	48.4%	98.3%	14.8%	151.0bp	151.0bp
1029_IWL-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	257X	311.9X	0.0X	16890.0X	11829.2Mb	37922265	47X	99%	144bp	159bp	57.4%	0.41%	0.0M	697.6M	100.0%	99.1%	7.0%	697.6M	162.3bp
1029_IWL-T1-TDNA-1_A23MHWWLT4_1_S7_L001																									9.2%	95.1%	10558.4Mb	85.0M	48.5%	99.3%	51.0%	151.0bp	151.0bp
1029_IWL-T1-TDNA-1_A23MHWWLT4_1_S7_L002																									9.3%	95.4%	11045.2Mb	88.7M	48.5%	99.3%	51.2%	151.0bp	151.0bp
1029_IWL-T1-TDNA-1_A23MHWWLT4_1_S7_L003																									8.9%	95.1%	10855.5Mb	87.5M	48.5%	99.3%	51.3%	151.0bp	151.0bp
1029_IWL-T1-TDNA-1_A23MHWWLT4_1_S7_L004																									8.6%	95.0%	10991.9Mb	88.9M	48.6%	99.3%	51.7%	151.0bp	151.0bp
1029_IWL-T1-TDNA-1_A23MHWWLT4_1_S7_L005																									8.2%	94.4%	10712.5Mb	87.0M	48.5%	99.2%	51.4%	151.0bp	151.0bp
1029_IWL-T1-TDNA-1_A23MHWWLT4_1_S7_L006																									8.1%	94.5%	10675.2Mb	86.7M	48.6%	99.2%	51.7%	151.0bp	151.0bp
1029_IWL-T1-TDNA-1_A23MHWWLT4_1_S7_L007																									8.6%	94.8%	10834.7Mb	87.5M	48.4%	99.3%	51.1%	151.0bp	151.0bp
1029_IWL-T1-TDNA-1_A23MHWWLT4_1_S7_L008																									9.2%	94.9%	10709.1Mb	86.4M	48.5%	99.3%	50.9%	151.0bp	151.0bp
1029_N5D-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	815X	1169.1X	0.0X	64499.0X	44336.2Mb	37922265	42X	99%	292bp	323bp	63.2%	0.65%	0.0M	2048.1M	100.0%	98.6%	4.0%	2048.1M	346.9bp
1029_N5D-T1-TDNA-1_A23MHWWLT4_1_S1_L001																									13.8%	90.2%	33999.4Mb	257.2M	48.7%	97.8%	11.8%	151.0bp	151.0bp
1029_N5D-T1-TDNA-1_A23MHWWLT4_1_S1_L002																									13.1%	90.5%	34606.7Mb	261.2M	48.8%	97.8%	12.2%	151.0bp	151.0bp
1029_N5D-T1-TDNA-1_A23MHWWLT4_1_S1_L003																									12.7%	90.1%	33785.8Mb	256.1M	48.8%	97.7%	12.3%	151.0bp	151.0bp
1029_N5D-T1-TDNA-1_A23MHWWLT4_1_S1_L004																									11.6%	89.7%	33373.5Mb	254.5M	48.8%	97.6%	12.7%	151.0bp	151.0bp
1029_N5D-T1-TDNA-1_A23MHWWLT4_1_S1_L005																									11.3%	89.1%	32791.3Mb	251.7M	48.7%	97.6%	12.4%	151.0bp	151.0bp
1029_N5D-T1-TDNA-1_A23MHWWLT4_1_S1_L006																									11.3%	89.2%	32502.2Mb	249.2M	48.9%	97.6%	12.6%	151.0bp	151.0bp
1029_N5D-T1-TDNA-1_A23MHWWLT4_1_S1_L007																									12.3%	89.6%	33719.9Mb	257.0M	48.7%	97.6%	12.2%	151.0bp	151.0bp
1029_N5D-T1-TDNA-1_A23MHWWLT4_1_S1_L008																									13.9%	90.0%	34467.9Mb	261.2M	48.8%	97.8%	11.8%	151.0bp	151.0bp
1029_T05-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	574X	812.6X	0.0X	21684.0X	30816.1Mb	37922265	43X	99%	264bp	294bp	65.1%	0.60%	0.0M	1538.2M	100.0%	98.7%	4.1%	1538.2M	315.2bp
1029_T05-T1-TDNA-1_A23MHWWLT4_1_S19_L001																									13.9%	91.3%	25731.2Mb	193.6M	48.8%	98.3%	14.4%	151.0bp	151.0bp
1029_T05-T1-TDNA-1_A23MHWWLT4_1_S19_L002																									13.3%	91.6%	26226.3Mb	196.8M	48.8%	98.3%	14.9%	151.0bp	151.0bp
1029_T05-T1-TDNA-1_A23MHWWLT4_1_S19_L003																									12.8%	91.2%	25525.4Mb	192.5M	48.8%	98.2%	15.0%	151.0bp	151.0bp
1029_T05-T1-TDNA-1_A23MHWWLT4_1_S19_L004																									11.8%	90.8%	25167.6Mb	190.8M	48.9%	98.2%	15.4%	151.0bp	151.0bp
1029_T05-T1-TDNA-1_A23MHWWLT4_1_S19_L005																									11.4%	90.2%	24714.4Mb	188.6M	48.8%	98.1%	15.1%	151.0bp	151.0bp
1029_T05-T1-TDNA-1_A23MHWWLT4_1_S19_L006																									11.4%	90.3%	24491.0Mb	186.6M	48.9%	98.2%	15.3%	151.0bp	151.0bp
1029_T05-T1-TDNA-1_A23MHWWLT4_1_S19_L007																									12.4%	90.7%	25432.7Mb	192.7M	48.8%	98.2%	14.8%	151.0bp	151.0bp
1029_T05-T1-TDNA-1_A23MHWWLT4_1_S19_L008																									14.0%	91.0%	26056.6Mb	196.5M	48.8%	98.3%	14.4%	151.0bp	151.0bp
1047_JG-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	1025X	1330.2X	0.0X	18701.0X	50443.7Mb	37922265	47X	99%	206bp	231bp	68.4%	0.45%	0.0M	3083.1M	100.0%	99.5%	4.1%	3083.1M	244.7bp
1047_JG-T1-TDNA-1_A23MHWWLT4_1_S42_L001																									16.4%	93.8%	51763.9Mb	385.8M	46.8%	99.0%	22.7%	151.0bp	151.0bp
1047_JG-T1-TDNA-1_A23MHWWLT4_1_S42_L002																									16.3%	94.1%	53117.4Mb	394.8M	46.9%	99.0%	23.1%	151.0bp	151.0bp
1047_JG-T1-TDNA-1_A23MHWWLT4_1_S42_L003																									15.6%	93.8%	51728.0Mb	386.2M	46.9%	99.0%	23.2%	151.0bp	151.0bp
1047_JG-T1-TDNA-1_A23MHWWLT4_1_S42_L004																									14.8%	93.5%	51398.8Mb	385.1M	47.0%	99.0%	23.6%	151.0bp	151.0bp
1047_JG-T1-TDNA-1_A23MHWWLT4_1_S42_L005																									14.3%	92.9%	50440.7Mb	379.9M	46.9%	99.0%	23.2%	151.0bp	151.0bp
1047_JG-T1-TDNA-1_A23MHWWLT4_1_S42_L006																									14.1%	93.0%	49879.2Mb	375.6M	47.0%	99.0%	23.6%	151.0bp	151.0bp
1047_JG-T1-TDNA-1_A23MHWWLT4_1_S42_L007																									15.1%	93.4%	51570.3Mb	386.2M	46.8%	99.0%	22.9%	151.0bp	151.0bp
1047_JG-T1-TDNA-1_A23MHWWLT4_1_S42_L008																									16.4%	93.6%	52155.0Mb	389.5M	46.9%	99.0%	22.6%	151.0bp	151.0bp
1136_00H-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	588X	984.3X	0.0X	28088.0X	37325.4Mb	37922265	43X	99%	325bp	352bp	58.4%	0.73%	0.0M	1357.1M	100.0%	98.8%	3.6%	1357.1M	378.0bp
1136_00H-T1-TDNA-1_A23MHWWLT4_1_S28_L001																									12.2%	88.6%	22553.2Mb	172.2M	48.4%	97.0%	8.9%	151.0bp	151.0bp
1136_00H-T1-TDNA-1_A23MHWWLT4_1_S28_L002																									11.2%	88.9%	22725.4Mb	173.1M	48.5%	97.0%	9.3%	151.0bp	151.0bp
1136_00H-T1-TDNA-1_A23MHWWLT4_1_S28_L003																									10.9%	88.6%	22119.1Mb	169.3M	48.5%	96.9%	9.4%	151.0bp	151.0bp
1136_00H-T1-TDNA-1_A23MHWWLT4_1_S28_L004																									9.8%	88.0%	21815.1Mb	168.1M	48.6%	96.8%	9.8%	151.0bp	151.0bp
1136_00H-T1-TDNA-1_A23MHWWLT4_1_S28_L005																									9.5%	87.4%	21337.9Mb	165.6M	48.5%	96.7%	9.6%	151.0bp	151.0bp
1136_00H-T1-TDNA-1_A23MHWWLT4_1_S28_L006																									9.6%	87.6%	21177.6Mb	164.0M	48.6%	96.8%	9.7%	151.0bp	151.0bp
1136_00H-T1-TDNA-1_A23MHWWLT4_1_S28_L007																									10.6%	88.0%	21989.3Mb	169.3M	48.5%	96.8%	9.3%	151.0bp	151.0bp
1136_00H-T1-TDNA-1_A23MHWWLT4_1_S28_L008																									12.2%	88.4%	22910.1Mb	175.4M	48.5%	97.1%	8.9%	151.0bp	151.0bp
1136_3LU-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	548X	971.0X	0.0X	31321.0X	36822.0Mb	37922265	43X	99%	330bp	358bp	61.1%	0.73%	0.0M	1428.9M	100.0%	99.0%	3.5%	1428.9M	382.7bp
1136_3LU-T1-TDNA-1_A23MHWWLT4_1_S43_L001																									12.4%	88.6%	23961.4Mb	183.2M	47.4%	97.1%	9.4%	151.0bp	151.0bp
1136_3LU-T1-TDNA-1_A23MHWWLT4_1_S43_L002																									11.5%	88.9%	23988.4Mb	183.2M	47.5%	97.0%	9.8%	151.0bp	151.0bp
1136_3LU-T1-TDNA-1_A23MHWWLT4_1_S43_L003																									11.2%	88.5%	23309.2Mb	178.7M	47.5%	97.0%	9.9%	151.0bp	151.0bp
1136_3LU-T1-TDNA-1_A23MHWWLT4_1_S43_L004																									10.0%	88.0%	22732.7Mb	175.5M	47.6%	96.9%	10.3%	151.0bp	151.0bp
1136_3LU-T1-TDNA-1_A23MHWWLT4_1_S43_L005																									9.7%	87.4%	22277.6Mb	173.2M	47.5%	96.8%	10.1%	151.0bp	151.0bp
1136_3LU-T1-TDNA-1_A23MHWWLT4_1_S43_L006																									9.9%	87.6%	22194.2Mb	172.2M	47.6%	96.9%	10.2%	151.0bp	151.0bp
1136_3LU-T1-TDNA-1_A23MHWWLT4_1_S43_L007																									10.8%	88.0%	23067.9Mb	177.9M	47.5%	96.9%	9.8%	151.0bp	151.0bp
1136_3LU-T1-TDNA-1_A23MHWWLT4_1_S43_L008																									12.5%	88.5%	24134.0Mb	184.9M	47.5%	97.1%	9.4%	151.0bp	151.0bp
1136_3MV-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	553X	870.3X	0.0X	92086.0X	33004.1Mb	37922265	44X	99%	283bp	314bp	58.3%	0.64%	0.0M	1247.6M	100.0%	98.9%	3.8%	1247.7M	337.5bp
1136_3MV-T1-TDNA-1_A23MHWWLT4_1_S37_L001																									12.2%	90.4%	20700.2Mb	156.0M	49.3%	98.0%	12.0%	151.0bp	151.0bp
1136_3MV-T1-TDNA-1_A23MHWWLT4_1_S37_L002																									11.5%	90.7%	21106.3Mb	158.7M	49.4%	98.0%	12.4%	151.0bp	151.0bp
1136_3MV-T1-TDNA-1_A23MHWWLT4_1_S37_L003																									11.1%	90.3%	20660.5Mb	156.0M	49.4%	97.9%	12.4%	151.0bp	151.0bp
1136_3MV-T1-TDNA-1_A23MHWWLT4_1_S37_L004																									10.1%	89.9%	20414.8Mb	155.0M	49.5%	97.9%	12.8%	151.0bp	151.0bp
1136_3MV-T1-TDNA-1_A23MHWWLT4_1_S37_L005																									9.9%	89.3%	20091.2Mb	153.6M	49.4%	97.8%	12.6%	151.0bp	151.0bp
1136_3MV-T1-TDNA-1_A23MHWWLT4_1_S37_L006																									9.9%	89.4%	19970.5Mb	152.4M	49.5%	97.9%	12.7%	151.0bp	151.0bp
1136_3MV-T1-TDNA-1_A23MHWWLT4_1_S37_L007																									10.8%	89.8%	20634.1Mb	156.6M	49.4%	97.8%	12.3%	151.0bp	151.0bp
1136_3MV-T1-TDNA-1_A23MHWWLT4_1_S37_L008																									12.3%	90.2%	21108.5Mb	159.4M	49.4%	98.0%	11.9%	151.0bp	151.0bp
1136_3U6-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	758X	1207.8X	0.0X	31149.0X	45803.1Mb	37922265	44X	99%	277bp	307bp	62.8%	0.63%	0.0M	1931.2M	100.0%	99.1%	3.8%	1931.2M	329.6bp
1136_3U6-T1-TDNA-1_A23MHWWLT4_1_S9_L001																									13.6%	90.4%	32577.4Mb	246.1M	48.9%	97.9%	12.9%	151.0bp	151.0bp
1136_3U6-T1-TDNA-1_A23MHWWLT4_1_S9_L002																									12.9%	90.8%	32790.9Mb	247.2M	49.0%	97.9%	13.3%	151.0bp	151.0bp
1136_3U6-T1-TDNA-1_A23MHWWLT4_1_S9_L003																									12.4%	90.4%	31848.5Mb	241.2M	49.0%	97.8%	13.4%	151.0bp	151.0bp
1136_3U6-T1-TDNA-1_A23MHWWLT4_1_S9_L004																									11.4%	90.0%	31311.5Mb	238.4M	49.0%	97.8%	13.8%	151.0bp	151.0bp
1136_3U6-T1-TDNA-1_A23MHWWLT4_1_S9_L005																									11.1%	89.3%	30712.0Mb	235.4M	48.9%	97.7%	13.5%	151.0bp	151.0bp
1136_3U6-T1-TDNA-1_A23MHWWLT4_1_S9_L006																									11.1%	89.5%	30555.0Mb	233.9M	49.1%	97.8%	13.7%	151.0bp	151.0bp
1136_3U6-T1-TDNA-1_A23MHWWLT4_1_S9_L007																									12.1%	89.9%	31613.0Mb	240.6M	48.9%	97.7%	13.2%	151.0bp	151.0bp
1136_3U6-T1-TDNA-1_A23MHWWLT4_1_S9_L008																									13.7%	90.2%	32794.4Mb	248.4M	48.9%	97.9%	12.8%	151.0bp	151.0bp
1136_3WJ-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	339X	450.6X	0.0X	11133.0X	17087.1Mb	37922265	44X	99%	198bp	223bp	54.7%	0.51%	0.0M	746.4M	100.0%	98.6%	5.4%	746.4M	237.8bp
1136_3WJ-T1-TDNA-1_A23MHWWLT4_1_S45_L001																									10.7%	93.2%	12402.9Mb	94.0M	49.5%	98.9%	25.7%	151.0bp	151.0bp
1136_3WJ-T1-TDNA-1_A23MHWWLT4_1_S45_L002																									10.4%	93.6%	12653.9Mb	95.7M	49.5%	99.0%	26.2%	151.0bp	151.0bp
1136_3WJ-T1-TDNA-1_A23MHWWLT4_1_S45_L003																									9.9%	93.2%	12128.7Mb	92.1M	49.5%	98.9%	26.3%	151.0bp	151.0bp
1136_3WJ-T1-TDNA-1_A23MHWWLT4_1_S45_L004																									9.3%	92.9%	12620.6Mb	96.3M	49.6%	98.9%	27.0%	151.0bp	151.0bp
1136_3WJ-T1-TDNA-1_A23MHWWLT4_1_S45_L005																									8.9%	92.3%	11880.2Mb	91.1M	49.5%	98.9%	26.5%	151.0bp	151.0bp
1136_3WJ-T1-TDNA-1_A23MHWWLT4_1_S45_L006																									8.8%	92.4%	11796.8Mb	90.4M	49.6%	98.9%	26.7%	151.0bp	151.0bp
1136_3WJ-T1-TDNA-1_A23MHWWLT4_1_S45_L007																									9.7%	92.8%	12083.3Mb	92.1M	49.5%	98.9%	26.0%	151.0bp	151.0bp
1136_3WJ-T1-TDNA-1_A23MHWWLT4_1_S45_L008																									10.8%	93.0%	12448.6Mb	94.6M	49.5%	99.0%	25.6%	151.0bp	151.0bp
1136_4GR-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	501X	723.8X	0.0X	21483.0X	27447.1Mb	37922265	44X	99%	220bp	250bp	53.9%	0.54%	0.0M	1040.2M	100.0%	98.9%	4.5%	1040.2M	266.9bp
1136_4GR-T1-TDNA-1_A23MHWWLT4_1_S16_L001																									10.5%	92.4%	17303.9Mb	130.5M	50.1%	98.8%	20.9%	151.0bp	151.0bp
1136_4GR-T1-TDNA-1_A23MHWWLT4_1_S16_L002																									10.0%	92.7%	17690.4Mb	133.0M	50.1%	98.8%	21.4%	151.0bp	151.0bp
1136_4GR-T1-TDNA-1_A23MHWWLT4_1_S16_L003																									9.6%	92.4%	17035.8Mb	128.7M	50.2%	98.8%	21.5%	151.0bp	151.0bp
1136_4GR-T1-TDNA-1_A23MHWWLT4_1_S16_L004																									8.9%	92.0%	17560.3Mb	133.4M	50.2%	98.8%	22.1%	151.0bp	151.0bp
1136_4GR-T1-TDNA-1_A23MHWWLT4_1_S16_L005																									8.5%	91.4%	16675.0Mb	127.4M	50.1%	98.7%	21.6%	151.0bp	151.0bp
1136_4GR-T1-TDNA-1_A23MHWWLT4_1_S16_L006																									8.5%	91.5%	16515.5Mb	126.1M	50.3%	98.8%	21.8%	151.0bp	151.0bp
1136_4GR-T1-TDNA-1_A23MHWWLT4_1_S16_L007																									9.4%	91.9%	17029.3Mb	129.2M	50.1%	98.8%	21.2%	151.0bp	151.0bp
1136_4GR-T1-TDNA-1_A23MHWWLT4_1_S16_L008																									10.6%	92.2%	17459.0Mb	131.9M	50.1%	98.8%	20.8%	151.0bp	151.0bp
1136_4XR-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	545X	884.6X	0.0X	24510.0X	33547.2Mb	37922265	44X	99%	269bp	296bp	56.0%	0.57%	0.0M	1198.4M	100.0%	99.1%	3.7%	1198.4M	323.5bp
1136_4XR-T1-TDNA-1_A23MHWWLT4_1_S47_L001																									13.9%	91.5%	20133.5Mb	150.1M	48.2%	98.3%	12.5%	151.0bp	151.0bp
1136_4XR-T1-TDNA-1_A23MHWWLT4_1_S47_L002																									13.0%	91.8%	20441.6Mb	152.0M	48.2%	98.3%	12.9%	151.0bp	151.0bp
1136_4XR-T1-TDNA-1_A23MHWWLT4_1_S47_L003																									12.6%	91.4%	20012.0Mb	149.5M	48.2%	98.3%	12.9%	151.0bp	151.0bp
1136_4XR-T1-TDNA-1_A23MHWWLT4_1_S47_L004																									11.5%	91.1%	19834.5Mb	148.9M	48.3%	98.3%	13.3%	151.0bp	151.0bp
1136_4XR-T1-TDNA-1_A23MHWWLT4_1_S47_L005																									11.3%	90.4%	19606.2Mb	148.1M	48.2%	98.2%	13.0%	151.0bp	151.0bp
1136_4XR-T1-TDNA-1_A23MHWWLT4_1_S47_L006																									11.3%	90.6%	19374.7Mb	146.1M	48.3%	98.3%	13.2%	151.0bp	151.0bp
1136_4XR-T1-TDNA-1_A23MHWWLT4_1_S47_L007																									12.4%	91.0%	20070.6Mb	150.6M	48.2%	98.2%	12.8%	151.0bp	151.0bp
1136_4XR-T1-TDNA-1_A23MHWWLT4_1_S47_L008																									14.0%	91.3%	20504.4Mb	153.2M	48.2%	98.4%	12.4%	151.0bp	151.0bp
1136_4Z5-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	421X	614.2X	0.0X	130789.0X	23293.3Mb	37922265	49X	99%	171bp	193bp	67.7%	0.44%	0.0M	1513.9M	100.0%	98.9%	5.1%	1513.9M	206.3bp
1136_4Z5-T1-TDNA-1_A23MHWWLT4_1_S2_L001																									16.0%	94.6%	24684.5Mb	189.1M	49.2%	99.2%	34.1%	151.0bp	151.0bp
1136_4Z5-T1-TDNA-1_A23MHWWLT4_1_S2_L002																									16.0%	94.9%	25348.8Mb	193.9M	49.2%	99.2%	34.6%	151.0bp	151.0bp
1136_4Z5-T1-TDNA-1_A23MHWWLT4_1_S2_L003																									15.1%	94.6%	24409.7Mb	187.4M	49.2%	99.2%	34.7%	151.0bp	151.0bp
1136_4Z5-T1-TDNA-1_A23MHWWLT4_1_S2_L004																									14.8%	94.4%	25264.7Mb	194.7M	49.3%	99.2%	35.2%	151.0bp	151.0bp
1136_4Z5-T1-TDNA-1_A23MHWWLT4_1_S2_L005																									14.0%	93.9%	24030.7Mb	185.9M	49.2%	99.2%	34.7%	151.0bp	151.0bp
1136_4Z5-T1-TDNA-1_A23MHWWLT4_1_S2_L006																									13.9%	94.0%	23926.5Mb	185.1M	49.3%	99.2%	35.0%	151.0bp	151.0bp
1136_4Z5-T1-TDNA-1_A23MHWWLT4_1_S2_L007																									14.7%	94.3%	24337.4Mb	187.2M	49.2%	99.2%	34.3%	151.0bp	151.0bp
1136_4Z5-T1-TDNA-1_A23MHWWLT4_1_S2_L008																									16.1%	94.5%	24847.0Mb	190.6M	49.2%	99.2%	33.9%	151.0bp	151.0bp
1136_4ZB-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	99.0%	396X	616.7X	0.0X	36324.0X	23387.3Mb	37922265	46X	99%	205bp	230bp	48.6%	0.47%	0.0M	809.5M	100.0%	99.0%	4.7%	809.5M	243.2bp
1136_4ZB-T1-TDNA-1_A23MHWWLT4_1_S13_L001																									10.3%	93.7%	13027.1Mb	97.9M	49.2%	99.0%	24.6%	151.0bp	151.0bp
1136_4ZB-T1-TDNA-1_A23MHWWLT4_1_S13_L002																									9.9%	94.0%	13635.4Mb	102.2M	49.3%	99.0%	25.0%	151.0bp	151.0bp
1136_4ZB-T1-TDNA-1_A23MHWWLT4_1_S13_L003																									9.6%	93.7%	13486.7Mb	101.5M	49.3%	99.0%	25.1%	151.0bp	151.0bp
1136_4ZB-T1-TDNA-1_A23MHWWLT4_1_S13_L004																									8.9%	93.4%	13582.5Mb	102.6M	49.3%	99.0%	25.5%	151.0bp	151.0bp
1136_4ZB-T1-TDNA-1_A23MHWWLT4_1_S13_L005																									8.8%	92.9%	13362.8Mb	101.5M	49.2%	99.0%	25.1%	151.0bp	151.0bp
1136_4ZB-T1-TDNA-1_A23MHWWLT4_1_S13_L006																									8.8%	93.0%	13291.5Mb	100.9M	49.4%	99.0%	25.5%	151.0bp	151.0bp
1136_4ZB-T1-TDNA-1_A23MHWWLT4_1_S13_L007																									9.5%	93.3%	13538.1Mb	102.2M	49.2%	99.0%	24.8%	151.0bp	151.0bp
1136_4ZB-T1-TDNA-1_A23MHWWLT4_1_S13_L008																									10.6%	93.5%	13404.0Mb	100.8M	49.3%	99.0%	24.4%	151.0bp	151.0bp
1136_5KC-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	518X	854.5X	0.0X	32597.0X	32403.9Mb	37922265	44X	99%	258bp	286bp	48.7%	0.56%	0.0M	980.7M	100.0%	99.3%	3.9%	980.7M	310.4bp
1136_5KC-T1-TDNA-1_A23MHWWLT4_1_S25_L001																									11.4%	91.6%	16201.8Mb	121.6M	48.6%	98.4%	15.0%	151.0bp	151.0bp
1136_5KC-T1-TDNA-1_A23MHWWLT4_1_S25_L002																									10.6%	91.9%	16598.1Mb	124.3M	48.6%	98.5%	15.5%	151.0bp	151.0bp
1136_5KC-T1-TDNA-1_A23MHWWLT4_1_S25_L003																									10.3%	91.5%	16231.6Mb	122.1M	48.6%	98.4%	15.5%	151.0bp	151.0bp
1136_5KC-T1-TDNA-1_A23MHWWLT4_1_S25_L004																									9.3%	91.2%	16314.8Mb	123.4M	48.7%	98.4%	15.9%	151.0bp	151.0bp
1136_5KC-T1-TDNA-1_A23MHWWLT4_1_S25_L005																									9.2%	90.5%	15981.6Mb	121.6M	48.6%	98.3%	15.6%	151.0bp	151.0bp
1136_5KC-T1-TDNA-1_A23MHWWLT4_1_S25_L006																									9.2%	90.7%	15819.6Mb	120.2M	48.7%	98.4%	15.8%	151.0bp	151.0bp
1136_5KC-T1-TDNA-1_A23MHWWLT4_1_S25_L007																									10.1%	91.1%	16264.0Mb	122.9M	48.6%	98.4%	15.3%	151.0bp	151.0bp
1136_5KC-T1-TDNA-1_A23MHWWLT4_1_S25_L008																									11.5%	91.4%	16555.1Mb	124.6M	48.6%	98.5%	14.9%	151.0bp	151.0bp
1136_5L2-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	459X	823.5X	0.0X	27069.0X	31230.4Mb	37922265	44X	99%	284bp	312bp	52.8%	0.62%	0.0M	998.3M	100.0%	99.3%	3.4%	998.3M	338.0bp
1136_5L2-T1-TDNA-1_A23MHWWLT4_1_S14_L001																									11.8%	90.5%	16500.4Mb	124.3M	47.0%	97.9%	11.9%	151.0bp	151.0bp
1136_5L2-T1-TDNA-1_A23MHWWLT4_1_S14_L002																									10.9%	90.8%	16831.9Mb	126.5M	47.1%	97.9%	12.3%	151.0bp	151.0bp
1136_5L2-T1-TDNA-1_A23MHWWLT4_1_S14_L003																									10.6%	90.4%	16465.8Mb	124.3M	47.1%	97.8%	12.4%	151.0bp	151.0bp
1136_5L2-T1-TDNA-1_A23MHWWLT4_1_S14_L004																									9.6%	90.0%	16490.6Mb	125.2M	47.1%	97.8%	12.8%	151.0bp	151.0bp
1136_5L2-T1-TDNA-1_A23MHWWLT4_1_S14_L005																									9.4%	89.4%	16151.8Mb	123.4M	47.0%	97.7%	12.6%	151.0bp	151.0bp
1136_5L2-T1-TDNA-1_A23MHWWLT4_1_S14_L006																									9.5%	89.5%	15993.1Mb	122.0M	47.2%	97.8%	12.7%	151.0bp	151.0bp
1136_5L2-T1-TDNA-1_A23MHWWLT4_1_S14_L007																									10.4%	89.9%	16493.9Mb	125.2M	47.0%	97.8%	12.3%	151.0bp	151.0bp
1136_5L2-T1-TDNA-1_A23MHWWLT4_1_S14_L008																									12.0%	90.3%	16899.1Mb	127.5M	47.0%	97.9%	11.9%	151.0bp	151.0bp
1136_5Q-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	546X	912.1X	0.0X	24272.0X	34590.3Mb	37922265	44X	99%	275bp	302bp	55.2%	0.58%	0.0M	1203.2M	100.0%	99.0%	3.7%	1203.7M	327.4bp
1136_5Q-T1-TDNA-1_A23MHWWLT4_1_S31_L001																									13.1%	91.3%	20322.4Mb	151.8M	48.5%	98.2%	12.2%	151.0bp	151.0bp
1136_5Q-T1-TDNA-1_A23MHWWLT4_1_S31_L002																									12.3%	91.6%	20545.5Mb	153.1M	48.5%	98.2%	12.5%	151.0bp	151.0bp
1136_5Q-T1-TDNA-1_A23MHWWLT4_1_S31_L003																									11.9%	91.2%	19998.1Mb	149.7M	48.6%	98.1%	12.6%	151.0bp	151.0bp
1136_5Q-T1-TDNA-1_A23MHWWLT4_1_S31_L004																									10.9%	90.8%	19899.1Mb	149.7M	48.6%	98.1%	13.0%	151.0bp	151.0bp
1136_5Q-T1-TDNA-1_A23MHWWLT4_1_S31_L005																									10.7%	90.2%	19501.5Mb	147.6M	48.5%	98.0%	12.7%	151.0bp	151.0bp
1136_5Q-T1-TDNA-1_A23MHWWLT4_1_S31_L006																									10.8%	90.3%	19439.6Mb	147.0M	48.6%	98.0%	12.8%	151.0bp	151.0bp
1136_5Q-T1-TDNA-1_A23MHWWLT4_1_S31_L007																									11.6%	90.7%	19987.9Mb	150.3M	48.5%	98.0%	12.4%	151.0bp	151.0bp
1136_5Q-T1-TDNA-1_A23MHWWLT4_1_S31_L008																									13.3%	91.0%	20637.0Mb	154.5M	48.5%	98.2%	12.1%	151.0bp	151.0bp
1136_5TB-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	697X	997.8X	0.0X	25504.0X	37840.2Mb	37922265	45X	99%	226bp	253bp	63.6%	0.51%	0.0M	1823.1M	100.0%	99.1%	4.3%	1823.1M	268.7bp
1136_5TB-T1-TDNA-1_A23MHWWLT4_1_S26_L001																									13.8%	92.8%	30682.4Mb	229.9M	49.1%	98.8%	19.9%	151.0bp	151.0bp
1136_5TB-T1-TDNA-1_A23MHWWLT4_1_S26_L002																									13.4%	93.1%	31243.0Mb	233.6M	49.1%	98.8%	20.4%	151.0bp	151.0bp
1136_5TB-T1-TDNA-1_A23MHWWLT4_1_S26_L003																									12.8%	92.8%	30243.9Mb	227.1M	49.1%	98.8%	20.5%	151.0bp	151.0bp
1136_5TB-T1-TDNA-1_A23MHWWLT4_1_S26_L004																									12.0%	92.5%	30233.5Mb	228.0M	49.2%	98.8%	21.0%	151.0bp	151.0bp
1136_5TB-T1-TDNA-1_A23MHWWLT4_1_S26_L005																									11.6%	91.9%	29398.9Mb	223.0M	49.1%	98.7%	20.6%	151.0bp	151.0bp
1136_5TB-T1-TDNA-1_A23MHWWLT4_1_S26_L006																									11.6%	92.0%	29257.7Mb	221.8M	49.2%	98.8%	20.9%	151.0bp	151.0bp
1136_5TB-T1-TDNA-1_A23MHWWLT4_1_S26_L007																									12.4%	92.3%	30142.4Mb	227.2M	49.1%	98.8%	20.3%	151.0bp	151.0bp
1136_5TB-T1-TDNA-1_A23MHWWLT4_1_S26_L008																									13.9%	92.6%	30963.9Mb	232.5M	49.1%	98.8%	19.8%	151.0bp	151.0bp
1136_6G2-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	558X	764.6X	0.0X	41905.0X	28996.1Mb	37922265	45X	99%	226bp	255bp	53.8%	0.55%	0.0M	1081.1M	100.0%	98.9%	4.5%	1081.1M	272.4bp
1136_6G2-T1-TDNA-1_A23MHWWLT4_1_S46_L001																									10.7%	92.3%	17799.2Mb	134.4M	50.7%	98.8%	20.3%	151.0bp	151.0bp
1136_6G2-T1-TDNA-1_A23MHWWLT4_1_S46_L002																									10.2%	92.6%	18317.5Mb	138.0M	50.8%	98.8%	20.7%	151.0bp	151.0bp
1136_6G2-T1-TDNA-1_A23MHWWLT4_1_S46_L003																									9.8%	92.2%	17864.4Mb	135.2M	50.8%	98.7%	20.9%	151.0bp	151.0bp
1136_6G2-T1-TDNA-1_A23MHWWLT4_1_S46_L004																									9.0%	91.9%	17845.2Mb	135.7M	50.9%	98.7%	21.4%	151.0bp	151.0bp
1136_6G2-T1-TDNA-1_A23MHWWLT4_1_S46_L005																									8.8%	91.3%	17414.8Mb	133.2M	50.8%	98.7%	21.0%	151.0bp	151.0bp
1136_6G2-T1-TDNA-1_A23MHWWLT4_1_S46_L006																									8.8%	91.4%	17287.9Mb	132.1M	50.9%	98.7%	21.2%	151.0bp	151.0bp
1136_6G2-T1-TDNA-1_A23MHWWLT4_1_S46_L007																									9.7%	91.8%	17830.9Mb	135.5M	50.7%	98.7%	20.6%	151.0bp	151.0bp
1136_6G2-T1-TDNA-1_A23MHWWLT4_1_S46_L008																									10.9%	92.0%	18086.8Mb	136.9M	50.8%	98.8%	20.2%	151.0bp	151.0bp
1136_6TL-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	99.0%	361X	601.3X	0.0X	32156.0X	22803.2Mb	37922265	45X	99%	215bp	242bp	55.0%	0.48%	0.0M	896.3M	100.0%	99.1%	4.3%	896.3M	261.8bp
1136_6TL-T1-TDNA-1_A23MHWWLT4_1_S17_L001																									12.5%	93.3%	14788.6Mb	111.0M	45.3%	98.9%	22.1%	151.0bp	151.0bp
1136_6TL-T1-TDNA-1_A23MHWWLT4_1_S17_L002																									12.0%	93.7%	15237.6Mb	114.1M	45.4%	98.9%	22.6%	151.0bp	151.0bp
1136_6TL-T1-TDNA-1_A23MHWWLT4_1_S17_L003																									11.5%	93.3%	14891.9Mb	112.0M	45.4%	98.9%	22.7%	151.0bp	151.0bp
1136_6TL-T1-TDNA-1_A23MHWWLT4_1_S17_L004																									10.7%	93.0%	14889.7Mb	112.4M	45.4%	98.9%	23.1%	151.0bp	151.0bp
1136_6TL-T1-TDNA-1_A23MHWWLT4_1_S17_L005																									10.5%	92.4%	14652.7Mb	111.2M	45.4%	98.9%	22.7%	151.0bp	151.0bp
1136_6TL-T1-TDNA-1_A23MHWWLT4_1_S17_L006																									10.5%	92.6%	14490.7Mb	109.9M	45.5%	98.9%	23.1%	151.0bp	151.0bp
1136_6TL-T1-TDNA-1_A23MHWWLT4_1_S17_L007																									11.3%	92.9%	14940.6Mb	112.7M	45.3%	98.9%	22.4%	151.0bp	151.0bp
1136_6TL-T1-TDNA-1_A23MHWWLT4_1_S17_L008																									12.7%	93.1%	15029.8Mb	113.0M	45.4%	98.9%	22.0%	151.0bp	151.0bp
1136_7GC-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	585X	846.0X	0.0X	39251.0X	32080.8Mb	37922265	46X	99%	208bp	233bp	61.7%	0.48%	0.0M	1525.5M	100.0%	99.1%	4.7%	1525.5M	246.1bp
1136_7GC-T1-TDNA-1_A23MHWWLT4_1_S40_L001																									12.9%	93.4%	25398.8Mb	191.5M	48.9%	99.0%	24.2%	151.0bp	151.0bp
1136_7GC-T1-TDNA-1_A23MHWWLT4_1_S40_L002																									12.6%	93.8%	26012.7Mb	195.6M	48.9%	99.0%	24.6%	151.0bp	151.0bp
1136_7GC-T1-TDNA-1_A23MHWWLT4_1_S40_L003																									12.0%	93.4%	25231.3Mb	190.6M	48.9%	99.0%	24.8%	151.0bp	151.0bp
1136_7GC-T1-TDNA-1_A23MHWWLT4_1_S40_L004																									11.3%	93.1%	25179.9Mb	191.0M	49.0%	99.0%	25.3%	151.0bp	151.0bp
1136_7GC-T1-TDNA-1_A23MHWWLT4_1_S40_L005																									10.9%	92.5%	24570.8Mb	187.4M	48.9%	98.9%	24.8%	151.0bp	151.0bp
1136_7GC-T1-TDNA-1_A23MHWWLT4_1_S40_L006																									10.8%	92.6%	24360.0Mb	185.7M	49.0%	99.0%	25.1%	151.0bp	151.0bp
1136_7GC-T1-TDNA-1_A23MHWWLT4_1_S40_L007																									11.8%	93.0%	25125.6Mb	190.4M	48.9%	99.0%	24.4%	151.0bp	151.0bp
1136_7GC-T1-TDNA-1_A23MHWWLT4_1_S40_L008																									13.0%	93.2%	25603.8Mb	193.4M	48.9%	99.0%	24.1%	151.0bp	151.0bp
1136_7OW-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	560X	919.3X	0.0X	44556.0X	34860.8Mb	37922265	44X	99%	272bp	300bp	57.4%	0.60%	0.0M	1292.7M	100.0%	99.0%	3.9%	1292.7M	324.8bp
1136_7OW-T1-TDNA-1_A23MHWWLT4_1_S33_L001																									12.9%	91.1%	21600.1Mb	162.2M	47.9%	98.3%	13.2%	151.0bp	151.0bp
1136_7OW-T1-TDNA-1_A23MHWWLT4_1_S33_L002																									12.2%	91.5%	21975.9Mb	164.5M	48.0%	98.3%	13.7%	151.0bp	151.0bp
1136_7OW-T1-TDNA-1_A23MHWWLT4_1_S33_L003																									11.8%	91.0%	21417.9Mb	161.1M	48.0%	98.2%	13.8%	151.0bp	151.0bp
1136_7OW-T1-TDNA-1_A23MHWWLT4_1_S33_L004																									10.7%	90.7%	21304.3Mb	161.1M	48.0%	98.2%	14.1%	151.0bp	151.0bp
1136_7OW-T1-TDNA-1_A23MHWWLT4_1_S33_L005																									10.5%	90.0%	20924.7Mb	159.2M	47.9%	98.1%	13.9%	151.0bp	151.0bp
1136_7OW-T1-TDNA-1_A23MHWWLT4_1_S33_L006																									10.6%	90.2%	20711.2Mb	157.4M	48.1%	98.2%	14.0%	151.0bp	151.0bp
1136_7OW-T1-TDNA-1_A23MHWWLT4_1_S33_L007																									11.5%	90.6%	21426.1Mb	162.0M	47.9%	98.2%	13.6%	151.0bp	151.0bp
1136_7OW-T1-TDNA-1_A23MHWWLT4_1_S33_L008																									13.1%	90.9%	21958.2Mb	165.2M	48.0%	98.3%	13.2%	151.0bp	151.0bp
1136_8DV-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	385X	493.9X	0.0X	25670.0X	18731.3Mb	37922265	46X	99%	178bp	210bp	57.4%	0.47%	0.0M	902.5M	100.0%	99.0%	5.5%	902.5M	224.3bp
1136_8DV-T1-TDNA-1_A23MHWWLT4_1_S6_L001																									11.1%	93.8%	14417.7Mb	110.7M	50.1%	99.0%	31.9%	151.0bp	151.0bp
1136_8DV-T1-TDNA-1_A23MHWWLT4_1_S6_L002																									10.9%	94.1%	14962.5Mb	114.6M	50.2%	99.0%	32.4%	151.0bp	151.0bp
1136_8DV-T1-TDNA-1_A23MHWWLT4_1_S6_L003																									10.4%	93.8%	14690.5Mb	113.0M	50.2%	99.0%	32.5%	151.0bp	151.0bp
1136_8DV-T1-TDNA-1_A23MHWWLT4_1_S6_L004																									9.8%	93.6%	14760.6Mb	113.9M	50.2%	99.0%	33.0%	151.0bp	151.0bp
1136_8DV-T1-TDNA-1_A23MHWWLT4_1_S6_L005																									9.5%	93.0%	14474.2Mb	112.3M	50.1%	98.9%	32.6%	151.0bp	151.0bp
1136_8DV-T1-TDNA-1_A23MHWWLT4_1_S6_L006																									9.5%	93.1%	14418.8Mb	111.8M	50.3%	99.0%	32.9%	151.0bp	151.0bp
1136_8DV-T1-TDNA-1_A23MHWWLT4_1_S6_L007																									10.2%	93.4%	14684.7Mb	113.3M	50.1%	99.0%	32.2%	151.0bp	151.0bp
1136_8DV-T1-TDNA-1_A23MHWWLT4_1_S6_L008																									11.2%	93.6%	14677.9Mb	112.9M	50.2%	99.0%	31.8%	151.0bp	151.0bp
1136_27F-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	760X	1154.3X	0.0X	106859.0X	43772.9Mb	37922265	47X	99%	222bp	250bp	63.9%	0.52%	0.0M	2051.1M	100.0%	99.1%	4.1%	2051.2M	264.7bp
1136_27F-T1-TDNA-1_A23MHWWLT4_1_S18_L001																									13.8%	92.9%	34402.7Mb	258.3M	50.4%	98.9%	20.9%	151.0bp	151.0bp
1136_27F-T1-TDNA-1_A23MHWWLT4_1_S18_L002																									13.5%	93.3%	35092.3Mb	262.8M	50.5%	99.0%	21.4%	151.0bp	151.0bp
1136_27F-T1-TDNA-1_A23MHWWLT4_1_S18_L003																									12.9%	92.9%	34117.4Mb	256.6M	50.5%	98.9%	21.5%	151.0bp	151.0bp
1136_27F-T1-TDNA-1_A23MHWWLT4_1_S18_L004																									12.0%	92.6%	33808.2Mb	255.4M	50.5%	98.9%	22.0%	151.0bp	151.0bp
1136_27F-T1-TDNA-1_A23MHWWLT4_1_S18_L005																									11.6%	92.0%	33086.8Mb	251.4M	50.4%	98.9%	21.6%	151.0bp	151.0bp
1136_27F-T1-TDNA-1_A23MHWWLT4_1_S18_L006																									11.6%	92.1%	32859.7Mb	249.5M	50.6%	98.9%	21.9%	151.0bp	151.0bp
1136_27F-T1-TDNA-1_A23MHWWLT4_1_S18_L007																									12.6%	92.5%	33934.1Mb	256.2M	50.4%	98.9%	21.3%	151.0bp	151.0bp
1136_27F-T1-TDNA-1_A23MHWWLT4_1_S18_L008																									13.8%	92.7%	34672.6Mb	260.9M	50.4%	99.0%	20.8%	151.0bp	151.0bp
1136_76X-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	553X	786.1X	0.0X	30803.0X	29810.1Mb	37922265	44X	99%	214bp	239bp	50.9%	0.53%	0.0M	1081.4M	100.0%	98.8%	5.1%	1081.4M	254.7bp
1136_76X-T1-TDNA-1_A23MHWWLT4_1_S41_L001																									10.5%	93.0%	17785.8Mb	134.0M	50.7%	98.9%	22.3%	151.0bp	151.0bp
1136_76X-T1-TDNA-1_A23MHWWLT4_1_S41_L002																									10.1%	93.3%	18317.4Mb	137.6M	50.7%	98.9%	22.7%	151.0bp	151.0bp
1136_76X-T1-TDNA-1_A23MHWWLT4_1_S41_L003																									9.6%	92.9%	17840.8Mb	134.6M	50.7%	98.9%	22.8%	151.0bp	151.0bp
1136_76X-T1-TDNA-1_A23MHWWLT4_1_S41_L004																									9.0%	92.7%	18048.8Mb	136.8M	50.8%	98.9%	23.3%	151.0bp	151.0bp
1136_76X-T1-TDNA-1_A23MHWWLT4_1_S41_L005																									8.7%	92.0%	17561.9Mb	133.8M	50.7%	98.8%	22.9%	151.0bp	151.0bp
1136_76X-T1-TDNA-1_A23MHWWLT4_1_S41_L006																									8.7%	92.2%	17443.8Mb	132.9M	50.8%	98.8%	23.2%	151.0bp	151.0bp
1136_76X-T1-TDNA-1_A23MHWWLT4_1_S41_L007																									9.5%	92.5%	17839.6Mb	135.1M	50.7%	98.8%	22.6%	151.0bp	151.0bp
1136_76X-T1-TDNA-1_A23MHWWLT4_1_S41_L008																									10.7%	92.8%	18108.4Mb	136.7M	50.7%	98.9%	22.2%	151.0bp	151.0bp
1136_81F-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	99.0%	99.0%	407X	526.9X	0.0X	22222.0X	19979.4Mb	37922265	45X	99%	141bp	156bp	56.3%	0.51%	0.0M	1170.8M	100.0%	98.6%	8.2%	1170.9M	157.8bp
1136_81F-T1-TDNA-1_A23MHWWLT4_1_S48_L001																									8.6%	95.0%	17697.5Mb	143.6M	52.9%	99.2%	52.6%	151.0bp	151.0bp
1136_81F-T1-TDNA-1_A23MHWWLT4_1_S48_L002																									8.8%	95.3%	18459.6Mb	149.4M	52.8%	99.2%	52.9%	151.0bp	151.0bp
1136_81F-T1-TDNA-1_A23MHWWLT4_1_S48_L003																									8.3%	95.0%	17983.9Mb	146.0M	52.9%	99.2%	53.0%	151.0bp	151.0bp
1136_81F-T1-TDNA-1_A23MHWWLT4_1_S48_L004																									8.3%	94.9%	18597.4Mb	151.5M	52.9%	99.2%	53.4%	151.0bp	151.0bp
1136_81F-T1-TDNA-1_A23MHWWLT4_1_S48_L005																									7.7%	94.4%	17714.9Mb	144.9M	52.9%	99.2%	53.1%	151.0bp	151.0bp
1136_81F-T1-TDNA-1_A23MHWWLT4_1_S48_L006																									7.7%	94.4%	17687.1Mb	144.7M	52.9%	99.2%	53.3%	151.0bp	151.0bp
1136_81F-T1-TDNA-1_A23MHWWLT4_1_S48_L007																									8.1%	94.8%	17891.3Mb	145.6M	52.8%	99.2%	52.7%	151.0bp	151.0bp
1136_81F-T1-TDNA-1_A23MHWWLT4_1_S48_L008																									8.7%	94.9%	17859.1Mb	145.1M	52.9%	99.2%	52.6%	151.0bp	151.0bp
1136_85O-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	99.0%	376X	565.4X	0.0X	31736.0X	21440.1Mb	37922265	45X	99%	219bp	248bp	55.2%	0.53%	0.0M	861.0M	100.0%	98.7%	4.5%	861.0M	264.8bp
1136_85O-T1-TDNA-1_A23MHWWLT4_1_S5_L001																									10.7%	92.7%	14202.9Mb	107.4M	47.6%	98.8%	22.1%	151.0bp	151.0bp
1136_85O-T1-TDNA-1_A23MHWWLT4_1_S5_L002																									10.3%	93.1%	14573.0Mb	109.9M	47.7%	98.8%	22.5%	151.0bp	151.0bp
1136_85O-T1-TDNA-1_A23MHWWLT4_1_S5_L003																									9.9%	92.7%	14122.6Mb	107.0M	47.7%	98.8%	22.6%	151.0bp	151.0bp
1136_85O-T1-TDNA-1_A23MHWWLT4_1_S5_L004																									9.2%	92.4%	14325.8Mb	109.1M	47.7%	98.8%	23.1%	151.0bp	151.0bp
1136_85O-T1-TDNA-1_A23MHWWLT4_1_S5_L005																									8.9%	91.7%	13863.7Mb	106.1M	47.7%	98.7%	22.7%	151.0bp	151.0bp
1136_85O-T1-TDNA-1_A23MHWWLT4_1_S5_L006																									8.9%	91.9%	13751.0Mb	105.2M	47.8%	98.8%	23.1%	151.0bp	151.0bp
1136_85O-T1-TDNA-1_A23MHWWLT4_1_S5_L007																									9.6%	92.2%	14091.3Mb	107.2M	47.6%	98.7%	22.3%	151.0bp	151.0bp
1136_85O-T1-TDNA-1_A23MHWWLT4_1_S5_L008																									10.8%	92.5%	14382.1Mb	109.0M	47.7%	98.8%	22.0%	151.0bp	151.0bp
1136_86S-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	547X	827.1X	0.0X	21466.0X	31365.6Mb	37922265	45X	99%	221bp	247bp	61.2%	0.49%	0.0M	1415.2M	100.0%	99.2%	4.1%	1415.2M	262.2bp
1136_86S-T1-TDNA-1_A23MHWWLT4_1_S24_L001																									12.6%	93.0%	23657.6Mb	177.8M	47.5%	98.9%	21.5%	151.0bp	151.0bp
1136_86S-T1-TDNA-1_A23MHWWLT4_1_S24_L002																									12.2%	93.4%	24244.8Mb	181.7M	47.5%	98.9%	22.0%	151.0bp	151.0bp
1136_86S-T1-TDNA-1_A23MHWWLT4_1_S24_L003																									11.6%	93.0%	23468.9Mb	176.7M	47.5%	98.9%	22.1%	151.0bp	151.0bp
1136_86S-T1-TDNA-1_A23MHWWLT4_1_S24_L004																									10.9%	92.7%	23453.4Mb	177.3M	47.6%	98.9%	22.5%	151.0bp	151.0bp
1136_86S-T1-TDNA-1_A23MHWWLT4_1_S24_L005																									10.5%	92.1%	22857.5Mb	173.8M	47.5%	98.9%	22.1%	151.0bp	151.0bp
1136_86S-T1-TDNA-1_A23MHWWLT4_1_S24_L006																									10.5%	92.2%	22612.8Mb	171.8M	47.6%	98.9%	22.4%	151.0bp	151.0bp
1136_86S-T1-TDNA-1_A23MHWWLT4_1_S24_L007																									11.4%	92.5%	23376.2Mb	176.6M	47.4%	98.9%	21.8%	151.0bp	151.0bp
1136_86S-T1-TDNA-1_A23MHWWLT4_1_S24_L008																									12.6%	92.8%	23841.4Mb	179.5M	47.5%	98.9%	21.4%	151.0bp	151.0bp
1136_87O-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	99.0%	622X	890.8X	0.0X	46631.0X	33779.1Mb	37922265	44X	99%	234bp	264bp	56.0%	0.52%	0.0M	1289.9M	100.0%	99.3%	4.4%	1289.9M	287.1bp
1136_87O-T1-TDNA-1_A23MHWWLT4_1_S34_L001																									12.9%	92.4%	21233.0Mb	159.4M	49.9%	98.6%	18.3%	151.0bp	151.0bp
1136_87O-T1-TDNA-1_A23MHWWLT4_1_S34_L002																									12.2%	92.7%	21867.9Mb	163.8M	50.0%	98.6%	18.8%	151.0bp	151.0bp
1136_87O-T1-TDNA-1_A23MHWWLT4_1_S34_L003																									11.8%	92.3%	21446.6Mb	161.3M	50.0%	98.6%	18.9%	151.0bp	151.0bp
1136_87O-T1-TDNA-1_A23MHWWLT4_1_S34_L004																									10.9%	92.0%	21321.1Mb	161.2M	50.0%	98.6%	19.3%	151.0bp	151.0bp
1136_87O-T1-TDNA-1_A23MHWWLT4_1_S34_L005																									10.7%	91.4%	20975.2Mb	159.4M	49.9%	98.5%	18.9%	151.0bp	151.0bp
1136_87O-T1-TDNA-1_A23MHWWLT4_1_S34_L006																									10.8%	91.5%	20916.7Mb	158.8M	50.1%	98.6%	19.2%	151.0bp	151.0bp
1136_87O-T1-TDNA-1_A23MHWWLT4_1_S34_L007																									11.6%	91.9%	21485.0Mb	162.3M	49.9%	98.6%	18.6%	151.0bp	151.0bp
1136_87O-T1-TDNA-1_A23MHWWLT4_1_S34_L008																									13.1%	92.2%	21778.8Mb	163.8M	49.9%	98.7%	18.2%	151.0bp	151.0bp
1136_253-T1-TDNA-1_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	553X	824.0X	0.0X	20367.0X	31246.4Mb	37922265	43X	99%	277bp	307bp	59.9%	0.67%	0.0M	1291.0M	100.0%	98.5%	4.1%	1291.0M	326.0bp
1136_253-T1-TDNA-1_A23MHWWLT4_1_S30_L001																									10.8%	90.1%	21625.9Mb	164.1M	49.2%	98.2%	13.1%	151.0bp	151.0bp
1136_253-T1-TDNA-1_A23MHWWLT4_1_S30_L002																									10.2%	90.5%	21979.3Mb	166.3M	49.3%	98.2%	13.5%	151.0bp	151.0bp
1136_253-T1-TDNA-1_A23MHWWLT4_1_S30_L003																									9.8%	90.0%	21283.2Mb	161.8M	49.3%	98.1%	13.6%	151.0bp	151.0bp
1136_253-T1-TDNA-1_A23MHWWLT4_1_S30_L004																									8.8%	89.6%	20902.7Mb	159.9M	49.3%	98.1%	14.0%	151.0bp	151.0bp
1136_253-T1-TDNA-1_A23MHWWLT4_1_S30_L005																									8.5%	88.9%	20382.8Mb	157.0M	49.3%	98.0%	13.8%	151.0bp	151.0bp
1136_253-T1-TDNA-1_A23MHWWLT4_1_S30_L006																									8.6%	89.1%	20205.8Mb	155.4M	49.4%	98.0%	13.9%	151.0bp	151.0bp
1136_253-T1-TDNA-1_A23MHWWLT4_1_S30_L007																									9.5%	89.5%	21094.7Mb	161.3M	49.2%	98.0%	13.5%	151.0bp	151.0bp
1136_253-T1-TDNA-1_A23MHWWLT4_1_S30_L008																									10.8%	89.9%	21732.6Mb	165.3M	49.3%	98.2%	13.0%	151.0bp	151.0bp
FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1	100.0%	100.0%	100.0%	100.0%	100.0%	599X	1087.2X	0.0X	48929.0X	41229.2Mb	37922265	43X	99%	334bp	358bp	53.6%	0.72%	0.0M	1256.0M	100.0%	99.1%	3.5%	1256.1M	382.2bp
FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1_S3_L001																									11.9%	89.0%	20986.4Mb	159.1M	49.1%	97.4%	8.0%	151.0bp	151.0bp
FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1_S3_L002																									10.9%	89.3%	21030.0Mb	159.1M	49.2%	97.4%	8.3%	151.0bp	151.0bp
FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1_S3_L003																									10.7%	88.9%	20533.9Mb	156.1M	49.2%	97.3%	8.4%	151.0bp	151.0bp
FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1_S3_L004																									9.5%	88.4%	20410.3Mb	156.2M	49.2%	97.2%	8.7%	151.0bp	151.0bp
FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1_S3_L005																									9.4%	87.7%	19945.8Mb	153.7M	49.0%	97.1%	8.5%	151.0bp	151.0bp
FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1_S3_L006																									9.5%	87.9%	19841.2Mb	152.6M	49.2%	97.2%	8.6%	151.0bp	151.0bp
FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1_S3_L007																									10.4%	88.4%	20508.8Mb	156.8M	49.1%	97.2%	8.3%	151.0bp	151.0bp
FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1_S3_L008																									12.1%	88.8%	21385.2Mb	162.5M	49.2%	97.4%	7.9%	151.0bp	151.0bp
NTC_0002_0015_A23MHWWLT4_1	0.0%	0.0%	0.0%	0.0%	0.0%	0X	0.0X	0.0X	1.0X	0.0Mb	37829230	2X	0%	110bp	128bp	93.5%	2.08%	0.0M	0.0M	99.9%	4.1%	14.4%	0.0M	158.9bp
NTC_0002_0015_A23MHWWLT4_1_S4_L001																									2.5%	61.1%	0.5Mb	0.0M	84.5%	42.9%	0.4%	151.0bp	151.0bp
NTC_0002_0015_A23MHWWLT4_1_S4_L002																									3.7%	62.0%	0.5Mb	0.0M	84.5%	45.6%	0.7%	151.0bp	151.0bp
NTC_0002_0015_A23MHWWLT4_1_S4_L003																									3.9%	61.5%	0.5Mb	0.0M	84.7%	43.8%	0.5%	151.0bp	151.0bp
NTC_0002_0015_A23MHWWLT4_1_S4_L004																									3.1%	60.8%	0.5Mb	0.0M	84.3%	41.4%	0.4%	151.0bp	151.0bp
NTC_0002_0015_A23MHWWLT4_1_S4_L005																									2.9%	61.3%	0.5Mb	0.0M	84.6%	40.7%	0.5%	151.0bp	151.0bp
NTC_0002_0015_A23MHWWLT4_1_S4_L006																									3.0%	61.4%	0.5Mb	0.0M	84.4%	42.2%	0.6%	151.0bp	151.0bp
NTC_0002_0015_A23MHWWLT4_1_S4_L007																									3.2%	62.0%	0.5Mb	0.0M	84.4%	42.4%	0.5%	151.0bp	151.0bp
NTC_0002_0015_A23MHWWLT4_1_S4_L008																									3.3%	61.1%	0.5Mb	0.0M	84.5%	45.3%	0.4%	151.0bp	151.0bp

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: general_stats_table_table

Sort	Group	Column	Description	ID	Scale
\|\|	Mosdepth	≥ 1X	Fraction of genome with at least 1X coverage	`mosdepth-1_x_pc`
\|\|	Mosdepth	≥ 5X	Fraction of genome with at least 5X coverage	`mosdepth-5_x_pc`
\|\|	Mosdepth	≥ 10X	Fraction of genome with at least 10X coverage	`mosdepth-10_x_pc`
\|\|	Mosdepth	≥ 30X	Fraction of genome with at least 30X coverage	`mosdepth-30_x_pc`
\|\|	Mosdepth	≥ 50X	Fraction of genome with at least 50X coverage	`mosdepth-50_x_pc`
\|\|	Mosdepth	Median	Median coverage	`mosdepth-median_coverage`
\|\|	Mosdepth	Mean Cov.	Mean coverage	`mosdepth-mean_coverage`
\|\|	Mosdepth	Min Cov.	Minimum coverage	`mosdepth-min_coverage`
\|\|	Mosdepth	Max Cov.	Maximum coverage	`mosdepth-max_coverage`
\|\|	Mosdepth	Mb Total Coverage Bases	Total coverage of bases (millions)	`mosdepth-coverage_bases`	base_count
\|\|	Mosdepth	Genome length	Total length of the genome	`mosdepth-length`
\|\|	Picard: HsMetrics	Fold Enrichment	Fold Enrichment	`picard_hsmetrics-FOLD_ENRICHMENT`
\|\|	Picard: HsMetrics	Target Bases ≥ 30X	Percent of target bases with coverage ≥ 30X	`picard_hsmetrics-picard_target_bases_30X`
\|\|	Picard: InsertSizeMetrics	Insert Size	Median Insert Size, all read orientations (bp)	`picard_insertsizemetrics-summed_median`
\|\|	Picard: InsertSizeMetrics	Mean Insert Size	Mean Insert Size, all read orientations (bp)	`picard_insertsizemetrics-summed_mean`
\|\|	Picard: Mark Duplicates	Duplication	Mark Duplicates - Percent Duplication	`picard_mark_duplicates-PERCENT_DUPLICATION`
\|\|	Samtools: stats	Error rate	Error rate: mismatches (NM) / bases mapped (CIGAR)	`samtools_stats-error_rate`
\|\|	Samtools: stats	Non-primary	Non-primary alignments (millions)	`samtools_stats-non_primary_alignments`	read_count
\|\|	Samtools: stats	Reads mapped	Reads mapped in the bam file (millions)	`samtools_stats-reads_mapped`	read_count
\|\|	Samtools: stats	% Mapped	% Mapped reads	`samtools_stats-reads_mapped_percent`
\|\|	Samtools: stats	% Proper pairs	% Properly paired reads	`samtools_stats-reads_properly_paired_percent`
\|\|	Samtools: stats	% MapQ 0 reads	% of reads that are ambiguously placed (MapQ=0)	`samtools_stats-reads_MQ0_percent`
\|\|	Samtools: stats	Total seqs	Total sequences in the bam file (millions)	`samtools_stats-raw_total_sequences`	read_count
\|\|	Samtools: stats	Mean insert	Average insert size	`samtools_stats-insert_size_average`
\|\|	fastp	% Duplication	Duplication rate before filtering	`fastp-pct_duplication`
\|\|	fastp	% > Q30	Percentage of reads > Q30 after filtering	`fastp-after_filtering_q30_rate`
\|\|	fastp	Mb Q30 bases	Bases > Q30 after filtering (millions)	`fastp-after_filtering_q30_bases`	base_count
\|\|	fastp	Reads After Filtering	Total reads after filtering (millions)	`fastp-filtering_result_passed_filter_reads`	read_count
\|\|	fastp	GC content	GC content after filtering	`fastp-after_filtering_gc_content`
\|\|	fastp	% PF	Percent reads passing filter	`fastp-pct_surviving`
\|\|	fastp	% Adapter	Percentage adapter-trimmed reads	`fastp-pct_adapter`
\|\|	fastp	Mean R1 Length	Mean read length of R1	`fastp-before_filtering_read1_mean_length`
\|\|	fastp	Mean R2 Length	Mean read length of R2	`fastp-before_filtering_read2_mean_length`

Seqtool

Seqtool performs qc analyses on sequencing alignments.

Basic Stats

Full summary statistics from seqtool output.

Showing ⁴⁸/₄₈ rows and ⁷⁰/₇₀ columns.

Sample Name	reads	unmapped	unique_reads	pairs	proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	dupes	frac_dupes	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frac_proper_pairs	frac_bases_gt30x	frac_bases_gt100x	frag_size_q20	frag_size_median	frag_size_q80	frag_size_mean	frag_size_std	n_q20	n_q25	n_q30	n_bases	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	bed	saturation_at_1000000_reads	roi_size	contam	n_sites	loglik	lrt	bed_base_count
659_Kh-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1148633740.0	10778.0	495613609.0	247800950.0	243471242.0	10958197.0	232513045.0	18785398.0	476817433.0	653020131.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	212.0	330.0	504.0	360.5	136.9	1.0	0.9	0.9	171109105582.0	2558.4	0.4	10630.0	373.0	677.0	2324.0	5032.0	7581.0	0.0	0.1	665091.0	665005.0	0.2	0.5	0.7	0.9	0.9	1.0	1.0	1.3	1.3	1.5	1.8	1.1	foresight_clarity_targets_hg38.bed	893839.0	666239.0	0.0	6826.0	-145314.5	34186.1	667386.0
659_Lx-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	519456.0	1575.0	150826.0	74624.0	71706.0	1436.0	70270.0	2804.0	146447.0	368630.0	0.7	1.0	0.0	1.0	1.0	0.0	0.0	114.0	168.0	254.0	188.7	69.1	1.0	0.9	0.9	71291258.0	0.3	1.5	24.0	0.0	0.0	0.0	1.0	2.0	1.0	1.0	0.0	0.0	0.4	0.4	0.5	0.6	0.6	1.0	1.1	1.7	1.4	1.6	2.3	1.9	foresight_clarity_targets_hg38.bed	1711.0	666239.0	0.5	0.0	0.0	0.0	667386.0
659_bR4-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1626177526.0	12090.0	538501316.0	269244142.0	265227300.0	9826848.0	255400452.0	16985520.0	521503706.0	1087676210.0	0.7	1.0	0.0	1.0	1.0	1.0	1.0	186.0	300.0	452.0	325.6	125.4	1.0	0.9	0.9	240562768521.0	2236.3	0.4	13686.0	514.0	799.0	2155.0	3835.0	5343.0	0.0	0.0	665098.0	665038.0	0.3	0.7	0.9	0.9	0.9	1.0	1.0	1.2	1.2	1.3	1.7	1.0	foresight_clarity_targets_hg38.bed	883432.0	666239.0	0.0	6179.0	-92222.4	17227.5	667386.0
659_bgw-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1291405768.0	10495.0	459515071.0	229751975.0	227261313.0	6625159.0	220636154.0	12057647.0	447446929.0	831890697.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	147.0	229.0	353.0	256.2	100.5	1.0	0.9	0.9	186979004009.0	1494.4	0.4	6307.0	369.0	596.0	1373.0	2764.0	4141.0	0.0	0.1	665086.0	664957.0	0.3	0.6	0.9	1.0	1.0	1.0	1.0	1.1	1.2	1.2	2.1	1.0	foresight_clarity_targets_hg38.bed	870169.0	666239.0	0.0	6704.0	-118009.8	34696.9	667386.0
659_cAd-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1226343906.0	13369.0	422067019.0	211026495.0	208942262.0	6197534.0	202744728.0	10931092.0	411122558.0	804276887.0	0.7	1.0	0.0	1.0	1.0	1.0	1.0	160.0	261.0	393.0	283.9	110.2	1.0	0.9	0.9	179620428592.0	1375.1	0.3	6292.0	374.0	570.0	1292.0	2494.0	3040.0	0.0	0.1	665098.0	665079.0	0.4	0.8	1.0	1.1	1.0	0.9	0.9	1.1	1.0	0.9	1.7	0.8	foresight_clarity_targets_hg38.bed	860286.0	666239.0	0.1	6565.0	-136595.3	53268.0	667386.0
659_cVw-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1576897808.0	14175.0	610911450.0	305448176.0	301761814.0	11779932.0	289981882.0	20641949.0	590255326.0	965986358.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	174.0	283.0	439.0	312.2	125.1	1.0	0.9	0.9	232333842578.0	2698.5	0.4	8120.0	585.0	919.0	2634.0	4779.0	5774.0	0.0	0.0	665099.0	665098.0	0.3	0.7	0.9	0.9	0.9	1.0	1.0	1.2	1.2	1.3	1.8	0.9	foresight_clarity_targets_hg38.bed	913418.0	666239.0	0.0	6365.0	-68758.5	6806.2	667386.0
659_cfy-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1403539190.0	12045.0	617987665.0	308987428.0	306598912.0	11673631.0	294925281.0	21178774.0	596796846.0	785551525.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	155.0	242.0	369.0	268.2	103.4	1.0	0.9	0.9	204507932474.0	2724.3	0.4	11509.0	581.0	955.0	2647.0	4845.0	5751.0	0.0	0.0	665075.0	665063.0	0.3	0.6	0.8	1.0	1.0	1.0	0.9	1.2	1.2	1.2	2.0	0.9	foresight_clarity_targets_hg38.bed	909768.0	666239.0	0.0	6276.0	-70152.1	8200.4	667386.0
659_cuO-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	176289574.0	2203.0	59175620.0	29586559.0	29221804.0	619265.0	28602539.0	1177334.0	57996083.0	117113954.0	0.7	1.0	0.0	1.0	1.0	1.0	0.7	117.0	184.0	278.0	203.0	77.6	1.0	0.9	0.9	24377819747.0	129.1	0.3	462.0	39.0	57.0	124.0	215.0	267.0	0.3	1.0	663642.0	460522.0	0.2	0.5	0.7	1.0	1.0	1.2	1.0	1.1	1.1	1.1	1.9	1.0	foresight_clarity_targets_hg38.bed	472696.0	666239.0	0.0	5854.0	-2918.0	140.4	667386.0
659_d0M-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1236217452.0	10003.0	489075159.0	244532174.0	240956121.0	9396047.0	231560074.0	16465108.0	472600048.0	747142293.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	178.0	277.0	426.0	307.6	119.9	1.0	0.9	0.9	182720151414.0	2159.1	0.4	8131.0	396.0	720.0	2013.0	3927.0	6292.0	0.0	0.0	663617.0	663570.0	0.3	0.6	0.8	1.0	0.9	0.9	1.0	1.2	1.2	1.3	2.0	1.1	foresight_clarity_targets_hg38.bed	905322.0	666239.0	0.0	6165.0	-43741.0	3823.7	667386.0
659_dm4-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1096629484.0	13225.0	433407238.0	216696773.0	214615370.0	5337137.0	209278233.0	10457986.0	422936027.0	663222246.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	106.0	152.0	218.0	165.8	54.7	1.0	1.0	1.0	145785669943.0	1079.6	0.3	3273.0	310.0	489.0	1071.0	1697.0	1978.0	0.0	0.2	665098.0	665063.0	0.2	0.5	0.8	1.0	1.0	1.1	1.0	1.2	1.1	1.1	1.6	0.9	foresight_clarity_targets_hg38.bed	787874.0	666239.0	0.0	6195.0	-33705.1	3720.8	667386.0
659_eKx-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	227242.0	1268.0	64616.0	31671.0	29752.0	665.0	29087.0	1237.0	62111.0	162626.0	0.7	1.0	0.0	1.0	0.9	0.0	0.0	130.0	206.0	319.0	230.8	91.6	1.0	0.9	0.9	32118322.0	0.1	1.7	5.0	0.0	0.0	0.0	1.0	2.0	1.0	1.0	0.0	0.0	0.0	0.6	0.4	0.7	1.0	1.3	1.3	1.4	1.2	0.6	1.1	0.0	foresight_clarity_targets_hg38.bed	771.0	666239.0	0.5	0.0	0.0	0.0	667386.0
1029_BCAN-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	525074166.0	9685.0	242580675.0	121285175.0	118427202.0	2295935.0	116131267.0	4610266.0	237960724.0	282493491.0	0.5	1.0	0.0	1.0	1.0	1.0	1.0	82.0	111.0	154.0	120.4	35.6	1.0	1.0	1.0	60545354240.0	389.5	0.4	1583.0	88.0	147.0	358.0	747.0	993.0	0.0	0.9	664984.0	656289.0	0.5	0.8	0.8	0.8	0.8	0.9	1.0	1.3	1.4	1.3	2.4	1.2	foresight_clarity_targets_hg38.bed	653725.0	666239.0	0.0	5863.0	-10638.6	1194.2	667386.0
1029_BICJ-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	980339122.0	11505.0	439171060.0	219579493.0	215974394.0	6530157.0	209444237.0	12614810.0	426544745.0	541168062.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	115.0	170.0	255.0	189.8	68.8	1.0	0.9	0.9	134995127654.0	1417.6	0.5	11410.0	238.0	387.0	1169.0	3194.0	4999.0	0.0	0.2	665096.0	665026.0	0.4	0.5	0.6	0.7	0.9	1.1	1.0	1.2	1.5	1.6	2.4	1.6	foresight_clarity_targets_hg38.bed	834722.0	666239.0	0.0	6743.0	-91256.8	23675.6	667386.0
1029_FRC-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1419885166.0	13228.0	496581566.0	248283728.0	243160562.0	7898723.0	235261839.0	14215623.0	482352715.0	923303600.0	0.7	1.0	0.0	1.0	1.0	1.0	1.0	145.0	241.0	383.0	271.0	113.1	1.0	0.9	0.9	205206534005.0	1769.7	0.4	7139.0	354.0	613.0	1719.0	3125.0	3690.0	0.0	0.1	665095.0	665044.0	0.3	0.6	0.7	0.9	1.1	1.2	1.0	1.1	1.1	1.2	1.7	1.0	foresight_clarity_targets_hg38.bed	882417.0	666239.0	0.0	6218.0	-70092.9	12169.9	667386.0
1029_FZX-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1266149634.0	12186.0	520981319.0	260484080.0	254224451.0	10216031.0	244008420.0	18003457.0	502965676.0	745168315.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	166.0	283.0	446.0	312.3	130.2	1.0	0.9	0.9	185591717028.0	2346.9	0.4	7947.0	262.0	526.0	2266.0	4606.0	5619.0	0.0	0.1	665088.0	664927.0	0.3	0.5	0.6	0.7	1.0	1.2	1.1	1.3	1.1	1.4	1.8	1.1	foresight_clarity_targets_hg38.bed	924323.0	666239.0	0.0	6188.0	-38184.2	1989.7	667386.0
1029_HTI-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1448569390.0	16383.0	595864436.0	297923632.0	292883861.0	9793793.0	283090068.0	18273581.0	577574472.0	852704954.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	136.0	211.0	324.0	235.9	90.7	1.0	0.9	0.9	207316963842.0	2251.5	0.4	7634.0	416.0	713.0	2156.0	4110.0	4960.0	0.0	0.0	665095.0	665054.0	0.3	0.6	0.7	0.8	1.0	1.2	1.1	1.2	1.2	1.3	1.9	1.1	foresight_clarity_targets_hg38.bed	906123.0	666239.0	0.0	6454.0	-60142.4	6127.0	667386.0
1029_I9B-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1544443570.0	14779.0	568052946.0	284018591.0	278325127.0	9799509.0	268525618.0	17401472.0	550636695.0	976390624.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	155.0	259.0	408.0	288.7	119.6	1.0	0.9	0.9	224528050972.0	2213.1	0.4	8638.0	381.0	670.0	2085.0	4138.0	5192.0	0.0	0.1	665097.0	665074.0	0.3	0.6	0.7	0.8	1.1	1.2	1.0	1.2	1.1	1.3	1.8	1.0	foresight_clarity_targets_hg38.bed	926348.0	666239.0	0.0	6428.0	-85025.8	13885.8	667386.0
1029_IWL-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	697641300.0	10291.0	297285814.0	148637553.0	146857592.0	3400600.0	143456992.0	6689849.0	290585674.0	400355486.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	102.0	144.0	208.0	158.8	52.4	1.0	0.9	0.9	91026129218.0	667.5	0.3	2821.0	171.0	294.0	656.0	1084.0	1294.0	0.0	0.6	664892.0	663564.0	0.4	0.6	0.7	0.8	0.8	1.0	1.1	1.4	1.4	1.2	1.9	0.8	foresight_clarity_targets_hg38.bed	747852.0	666239.0	0.0	6028.0	-13852.9	726.2	667386.0
1029_N5D-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	2048146770.0	20102.0	753355706.0	376667164.0	367451897.0	13127089.0	354324808.0	22623643.0	730711961.0	1294791064.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	172.0	296.0	464.0	324.6	135.5	1.0	0.9	0.9	299801627797.0	2904.1	0.4	17035.0	375.0	766.0	2851.0	5300.0	6240.0	0.0	0.0	665077.0	665066.0	0.3	0.6	0.7	0.7	1.1	1.2	1.1	1.2	1.2	1.3	1.8	1.1	foresight_clarity_targets_hg38.bed	923079.0	666239.0	0.0	6469.0	-106547.6	16287.4	667386.0
1029_T05-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1538215770.0	14402.0	537285328.0	268634957.0	262507724.0	8763216.0	253744508.0	15534052.0	521736874.0	1000930442.0	0.7	1.0	0.0	1.0	1.0	1.0	1.0	156.0	262.0	413.0	291.2	121.0	1.0	0.9	0.9	223724945620.0	1979.0	0.4	8649.0	322.0	574.0	1920.0	3592.0	4438.0	0.0	0.1	664962.0	664960.0	0.3	0.6	0.6	0.8	1.1	1.2	1.0	1.2	1.1	1.2	1.8	1.0	foresight_clarity_targets_hg38.bed	902335.0	666239.0	0.0	6120.0	-104515.9	25383.9	667386.0
1047_JG-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	3083091320.0	38363.0	975304779.0	487632713.0	482811481.0	12751885.0	470059596.0	23715950.0	951550466.0	2107786541.0	0.7	1.0	0.0	1.0	1.0	1.0	1.0	136.0	202.0	309.0	227.3	85.0	1.0	0.9	0.9	440613719037.0	2806.0	0.3	10528.0	921.0	1345.0	2697.0	4662.0	5711.0	0.0	0.0	665097.0	665094.0	0.3	0.7	1.0	1.0	1.0	1.0	0.9	1.1	1.1	1.2	1.5	1.4	foresight_clarity_targets_hg38.bed	900323.0	666239.0	0.0	6062.0	-65915.6	4975.9	667386.0
1136_00H-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1357084376.0	12467.0	564335704.0	282161091.0	275961650.0	12226487.0	263735163.0	21030753.0	543292484.0	792748672.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	181.0	316.0	495.0	343.7	143.4	1.0	0.9	0.9	200256919585.0	2801.1	0.4	11240.0	295.0	684.0	2658.0	5428.0	6227.0	0.0	0.1	664667.0	664449.0	0.2	0.5	0.6	0.8	1.0	1.1	1.0	1.4	1.3	1.3	1.9	1.0	foresight_clarity_targets_hg38.bed	912490.0	666239.0	0.0	6417.0	-71412.0	9058.6	667386.0
1136_3LU-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1428880482.0	13137.0	556512118.0	278248983.0	272672703.0	11659875.0	261012828.0	19887940.0	536611041.0	872368364.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	182.0	322.0	508.0	350.8	148.6	1.0	0.9	0.9	210529749834.0	2617.6	0.4	12285.0	377.0	727.0	2509.0	4821.0	5660.0	0.0	0.0	665079.0	665056.0	0.2	0.5	0.6	0.8	1.0	1.0	1.1	1.3	1.2	1.3	1.8	1.0	foresight_clarity_targets_hg38.bed	918590.0	666239.0	0.0	6201.0	-77077.0	11409.0	667386.0
1136_3MV-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1247664000.0	14630.0	520471679.0	260228055.0	255381333.0	12785891.0	242595442.0	23011325.0	497445724.0	727192321.0	0.6	1.0	0.1	0.9	1.0	1.0	1.0	164.0	277.0	438.0	308.0	128.3	1.0	0.9	0.9	182964140627.0	2610.6	0.5	65535.0	315.0	602.0	2167.0	4367.0	8430.0	0.0	0.1	665088.0	665024.0	0.3	0.5	0.6	0.8	1.0	1.1	1.0	1.3	1.2	1.3	1.9	1.0	foresight_clarity_targets_hg38.bed	909889.0	666239.0	0.0	6800.0	-186425.3	63389.7	667386.0
1136_3U6-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1931213300.0	20010.0	719269743.0	359624328.0	353339878.0	15027329.0	338312549.0	26677412.0	692572321.0	1211943557.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	160.0	267.0	424.0	298.7	125.9	1.0	0.9	0.9	282241843658.0	3447.2	0.4	19399.0	504.0	938.0	3255.0	6429.0	7664.0	0.0	0.0	665080.0	665075.0	0.2	0.5	0.6	0.8	0.9	1.1	1.0	1.3	1.3	1.5	1.8	1.2	foresight_clarity_targets_hg38.bed	917812.0	666239.0	0.0	6245.0	-72618.4	5932.4	667386.0
1136_3WJ-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	746414230.0	6731.0	337811345.0	168902050.0	165463416.0	5000912.0	160462504.0	9411681.0	328392933.0	408602885.0	0.5	1.0	0.0	1.0	1.0	1.0	1.0	128.0	199.0	308.0	223.9	87.7	1.0	0.9	0.9	105506096457.0	1121.9	0.4	3740.0	228.0	376.0	1070.0	2060.0	2370.0	0.0	0.2	665080.0	664911.0	0.3	0.6	0.6	0.7	0.9	1.1	1.1	1.3	1.2	1.1	1.7	1.0	foresight_clarity_targets_hg38.bed	840021.0	666239.0	0.0	5903.0	-25352.0	2363.8	667386.0
1136_4GR-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1040220240.0	10242.0	479396723.0	239692918.0	235786995.0	8920316.0	226866679.0	16513230.0	462873251.0	560823517.0	0.5	1.0	0.0	1.0	1.0	1.0	1.0	137.0	218.0	345.0	247.7	100.9	1.0	0.9	0.9	149105254405.0	2058.0	0.4	8014.0	330.0	574.0	1928.0	3938.0	5194.0	0.0	0.1	665099.0	665087.0	0.3	0.5	0.6	0.8	0.9	1.1	1.1	1.3	1.3	1.4	2.0	1.1	foresight_clarity_targets_hg38.bed	903816.0	666239.0	0.4	6182.0	-649872.4	781489.6	667386.0
1136_4XR-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1198380686.0	10644.0	526903639.0	263446115.0	259883109.0	10655134.0	249227975.0	19060096.0	507832899.0	671477047.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	162.0	266.0	410.0	292.9	116.9	1.0	0.9	0.9	175536769179.0	2481.7	0.4	8386.0	375.0	691.0	2368.0	4785.0	5539.0	0.0	0.1	665099.0	665095.0	0.3	0.5	0.6	0.8	1.0	1.2	1.0	1.2	1.3	1.3	1.7	1.0	foresight_clarity_targets_hg38.bed	899044.0	666239.0	0.0	6332.0	-66608.3	8234.9	667386.0
1136_4Z5-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1513892006.0	19666.0	489402082.0	244690891.0	240081788.0	6358676.0	233723112.0	12210434.0	477171982.0	1024489924.0	0.7	1.0	0.0	1.0	1.0	1.0	1.0	113.0	168.0	257.0	190.2	71.6	1.0	0.9	0.9	208518040149.0	1347.3	0.4	12146.0	337.0	515.0	1226.0	2580.0	3419.0	0.0	0.1	665091.0	665036.0	0.6	0.8	0.8	0.8	0.9	1.1	1.0	1.2	1.2	1.2	2.0	1.1	foresight_clarity_targets_hg38.bed	841259.0	666239.0	0.1	6675.0	-124090.3	44514.7	667386.0
1136_4ZB-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	809484368.0	8646.0	416233569.0	208112211.0	205389449.0	7383120.0	198006329.0	13829950.0	402394973.0	393250799.0	0.5	1.0	0.0	1.0	1.0	1.0	1.0	130.0	203.0	312.0	227.2	88.2	1.0	0.9	0.9	114870693862.0	1684.4	0.4	8077.0	260.0	479.0	1532.0	3442.0	4390.0	0.0	0.1	664946.0	664653.0	0.4	0.5	0.6	0.8	1.0	1.1	1.1	1.3	1.2	1.1	1.8	1.0	foresight_clarity_targets_hg38.bed	869754.0	666239.0	0.1	6563.0	-156692.3	63927.5	667386.0
1136_5KC-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	980697938.0	8025.0	502742878.0	251367062.0	248792028.0	10624626.0	238167402.0	19154477.0	483580376.0	477955060.0	0.5	1.0	0.0	1.0	1.0	1.0	1.0	152.0	254.0	397.0	281.5	115.5	1.0	0.9	0.9	142446157414.0	2474.3	0.4	7427.0	349.0	667.0	2357.0	4807.0	5589.0	0.0	0.1	665095.0	665067.0	0.2	0.4	0.5	0.8	1.0	1.1	1.1	1.3	1.3	1.2	1.8	0.9	foresight_clarity_targets_hg38.bed	904532.0	666239.0	0.0	6124.0	-52475.3	4649.1	667386.0
1136_5L2-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	998315166.0	8999.0	471656702.0	235823459.0	233085278.0	10154660.0	222930618.0	17920349.0	453727354.0	526658464.0	0.5	1.0	0.0	1.0	1.0	1.0	1.0	165.0	279.0	436.0	307.2	126.4	1.0	0.9	0.9	146277740745.0	2354.8	0.4	8153.0	382.0	673.0	2171.0	4612.0	6092.0	0.0	0.1	665069.0	665057.0	0.2	0.5	0.7	0.9	1.0	1.0	1.0	1.3	1.2	1.2	2.0	1.0	foresight_clarity_targets_hg38.bed	904975.0	666239.0	0.0	6246.0	-93845.7	22769.2	667386.0
1136_5Q-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1203678152.0	493022.0	539332623.0	269419074.0	265467673.0	11461826.0	254005847.0	20466707.0	518372894.0	664345529.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	164.0	272.0	420.0	299.0	120.0	1.0	0.9	0.9	176312354948.0	2684.0	0.5	13181.0	300.0	605.0	2364.0	5761.0	8475.0	0.0	0.1	665098.0	665048.0	0.2	0.4	0.6	0.8	1.1	1.2	1.1	1.2	1.2	1.3	1.7	1.0	foresight_clarity_targets_hg38.bed	892487.0	666239.0	0.1	6563.0	-203599.5	74515.9	667386.0
1136_5TB-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1823089358.0	19133.0	663741800.0	331860944.0	327020011.0	11315672.0	315704339.0	20838731.0	642883936.0	1159347558.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	142.0	226.0	349.0	252.0	99.6	1.0	0.9	0.9	261776636390.0	2598.2	0.4	9449.0	464.0	818.0	2515.0	4722.0	5946.0	0.0	0.0	665098.0	665091.0	0.3	0.5	0.6	0.8	1.0	1.2	1.0	1.2	1.2	1.3	1.6	1.2	foresight_clarity_targets_hg38.bed	898482.0	666239.0	0.0	6370.0	-78613.2	8992.2	667386.0
1136_6G2-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1081074494.0	10323.0	498930824.0	249459929.0	245634966.0	9406204.0	236228762.0	17344305.0	481576196.0	582143670.0	0.5	1.0	0.0	1.0	1.0	1.0	1.0	139.0	224.0	353.0	252.7	103.1	1.0	0.9	0.9	154930705871.0	2169.0	0.4	12173.0	298.0	538.0	2072.0	4113.0	5042.0	0.0	0.1	665053.0	664928.0	0.3	0.5	0.5	0.7	0.9	1.1	1.1	1.4	1.3	1.4	2.1	1.1	foresight_clarity_targets_hg38.bed	896950.0	666239.0	0.0	6137.0	-82635.7	16542.2	667386.0
1136_6TL-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	896285704.0	7758.0	403169800.0	201580757.0	199039409.0	7232755.0	191806654.0	13373842.0	389788200.0	493115904.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	133.0	213.0	336.0	240.6	97.9	1.0	0.9	0.9	127819297640.0	1635.7	0.5	14076.0	271.0	459.0	1330.0	3476.0	8406.0	0.0	0.2	665027.0	664837.0	0.5	0.7	0.8	1.2	1.2	1.0	0.9	1.0	0.9	0.9	1.3	0.8	foresight_clarity_targets_hg38.bed	866450.0	666239.0	0.0	6390.0	-64316.1	12567.5	667386.0
1136_7GC-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1525524812.0	16430.0	583796096.0	291889483.0	287762562.0	9889707.0	277872855.0	18470590.0	565309076.0	941728716.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	132.0	209.0	321.0	232.7	90.7	1.0	0.9	0.9	216356305435.0	2245.0	0.4	6400.0	456.0	754.0	2091.0	4315.0	5018.0	0.0	0.0	665073.0	665043.0	0.3	0.6	0.7	0.8	1.0	1.2	1.1	1.2	1.1	1.2	1.8	1.1	foresight_clarity_targets_hg38.bed	883172.0	666239.0	0.0	6349.0	-56925.3	5275.4	667386.0
1136_7OW-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1292740676.0	11895.0	550934406.0	275460855.0	271263035.0	11125895.0	260137140.0	19727008.0	531195503.0	741806270.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	161.0	268.0	419.0	296.8	121.5	1.0	0.9	0.9	188792883561.0	2553.5	0.4	7850.0	431.0	772.0	2422.0	4847.0	5655.0	0.0	0.0	665098.0	664975.0	0.3	0.6	0.7	0.9	1.0	1.1	1.0	1.2	1.1	1.2	1.8	1.0	foresight_clarity_targets_hg38.bed	902906.0	666239.0	0.0	6455.0	-68724.2	7940.2	667386.0
1136_8DV-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	902492764.0	9531.0	384818695.0	192404276.0	189554688.0	5565424.0	183989264.0	10539070.0	374270094.0	517674069.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	118.0	180.0	290.0	210.9	87.3	1.0	0.9	0.9	125146025075.0	1200.8	0.4	9002.0	257.0	420.0	1107.0	2232.0	3947.0	0.0	0.2	665099.0	665029.0	0.3	0.5	0.6	0.7	0.9	1.1	1.1	1.3	1.2	1.2	1.9	1.1	foresight_clarity_targets_hg38.bed	841989.0	666239.0	0.3	6416.0	-364399.7	366143.0	667386.0
1136_27F-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	2051161300.0	24095.0	740879491.0	370427287.0	364575574.0	13463605.0	351111969.0	24967804.0	715887592.0	1310281809.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	139.0	220.0	341.0	246.5	98.0	1.0	0.9	0.9	293685423514.0	3115.0	0.5	16767.0	456.0	832.0	2830.0	6014.0	11078.0	0.0	0.0	665077.0	665053.0	0.4	0.6	0.6	0.7	1.0	1.1	1.1	1.3	1.2	1.3	1.7	1.5	foresight_clarity_targets_hg38.bed	913412.0	666239.0	0.0	6444.0	-131865.0	26476.0	667386.0
1136_76X-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1081414144.0	10101.0	530451435.0	265220316.0	260968417.0	10280128.0	250688289.0	19202344.0	511238990.0	550962709.0	0.5	1.0	0.0	1.0	1.0	1.0	1.0	135.0	215.0	330.0	238.9	93.4	1.0	0.9	0.9	154240364314.0	2395.8	0.5	9606.0	295.0	537.0	2244.0	4827.0	5771.0	0.0	0.1	665097.0	665067.0	0.3	0.5	0.5	0.7	0.9	1.1	1.1	1.3	1.3	1.4	2.2	1.1	foresight_clarity_targets_hg38.bed	896326.0	666239.0	0.0	6198.0	-57577.0	6843.1	667386.0
1136_81F-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1170861098.0	14485.0	511916090.0	255950517.0	251154490.0	6291394.0	244863096.0	12433471.0	499468134.0	658945008.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	102.0	144.0	207.0	157.9	51.7	1.0	0.9	0.9	151732043577.0	1263.6	0.5	9455.0	197.0	328.0	1008.0	2756.0	3477.0	0.0	0.3	664999.0	664681.0	0.4	0.5	0.6	0.6	0.7	1.0	1.0	1.4	1.7	1.9	2.0	1.7	foresight_clarity_targets_hg38.bed	791260.0	666239.0	0.0	6427.0	-67552.0	14817.4	667386.0
1136_85O-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	860977808.0	10042.0	385341887.0	192665595.0	189090783.0	6196671.0	182894112.0	11455669.0	373876176.0	475635921.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	133.0	217.0	343.0	245.0	101.4	1.0	0.9	0.9	122641549988.0	1399.9	0.4	8143.0	301.0	477.0	1238.0	2756.0	3822.0	0.0	0.2	665092.0	665085.0	0.3	0.6	0.7	0.9	1.1	1.1	1.1	1.1	1.0	1.0	1.6	0.9	foresight_clarity_targets_hg38.bed	853485.0	666239.0	0.0	6361.0	-80169.9	16583.6	667386.0
1136_86S-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1415215252.0	13868.0	549776105.0	274880777.0	271513271.0	9280847.0	262232424.0	17144397.0	532617840.0	865439147.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	137.0	218.0	340.0	244.5	97.6	1.0	0.9	0.9	202273421300.0	2110.2	0.4	6543.0	477.0	773.0	1999.0	3895.0	4626.0	0.0	0.0	665097.0	665046.0	0.3	0.6	0.7	0.9	1.0	1.1	1.0	1.2	1.1	1.1	1.9	1.0	foresight_clarity_targets_hg38.bed	882854.0	666239.0	0.0	5913.0	-63820.5	9420.6	667386.0
1136_87O-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1289899336.0	13338.0	567249384.0	283617652.0	280543946.0	10421357.0	270122589.0	19102270.0	548133776.0	722649952.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	141.0	230.0	364.0	259.6	107.3	1.0	0.9	0.9	185760910018.0	2402.2	0.4	8899.0	222.0	519.0	2363.0	4450.0	5133.0	0.0	0.1	665097.0	664703.0	0.2	0.4	0.5	0.8	1.0	1.1	1.1	1.3	1.3	1.5	2.2	1.2	foresight_clarity_targets_hg38.bed	902956.0	666239.0	0.0	6068.0	-71826.2	11745.3	667386.0
1136_253-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats	1291015638.0	10971.0	517975318.0	258981722.0	252890964.0	9714167.0	243176797.0	17177551.0	500786796.0	773040320.0	0.6	1.0	0.0	1.0	1.0	1.0	1.0	165.0	276.0	433.0	305.4	125.6	1.0	0.9	0.9	188639083725.0	2228.6	0.4	9939.0	301.0	567.0	2134.0	4262.0	5213.0	0.0	0.1	665099.0	665074.0	0.3	0.5	0.6	0.8	1.1	1.2	1.1	1.2	1.1	1.2	1.9	1.1	foresight_clarity_targets_hg38.bed	904446.0	666239.0	0.0	6124.0	-123270.5	35846.1	667386.0
FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1_full_basic_stats	1256062814.0	13001.0	583069765.0	291527927.0	286980924.0	13967735.0	273013189.0	24207835.0	558848929.0	672993049.0	0.5	1.0	0.0	1.0	1.0	1.0	1.0	197.0	333.0	507.0	357.4	141.4	1.0	0.9	0.9	185904350293.0	3277.6	0.5	26338.0	438.0	771.0	2744.0	6564.0	16859.0	0.0	0.0	665099.0	665096.0	0.2	0.4	0.6	0.8	0.8	0.9	1.1	1.4	1.5	1.6	2.2	1.2	foresight_clarity_targets_hg38.bed	926376.0	666239.0	0.5	6046.0	-1173160.0	1672862.0	667386.0
NTC_0002_0015_A23MHWWLT4_1_full_basic_stats	41412.0	22.0	2698.0	1338.0	322.0	8.0	314.0	15.0	2661.0	38714.0	0.9	1.0	0.0	1.0	0.2	0.0	0.0	119.0	194.0	307.0	218.6	92.6	0.9	0.6	0.6	6230752.0	0.0	2.0	1.0	0.0	0.0	0.0	0.0	0.0	1.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.6	0.0	3.4	0.2	1.5	5.0	0.0	0.0	foresight_clarity_targets_hg38.bed	1.0	666239.0	0.5	0.0	0.0	0.0	667386.0

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: seqtool_full_basic_stats_table_table

Sort	Column	Description	ID
\|\|	reads	reads	`seqtool-reads`
\|\|	unmapped	unmapped	`seqtool-unmapped`
\|\|	unique_reads	unique_reads	`seqtool-unique_reads`
\|\|	pairs	pairs	`seqtool-pairs`
\|\|	proper_pairs	proper_pairs	`seqtool-proper_pairs`
\|\|	pairs_on_target	pairs_on_target	`seqtool-pairs_on_target`
\|\|	pairs_off_target	pairs_off_target	`seqtool-pairs_off_target`
\|\|	reads_on_target	reads_on_target	`seqtool-reads_on_target`
\|\|	reads_off_target	reads_off_target	`seqtool-reads_off_target`
\|\|	dupes	dupes	`seqtool-dupes`
\|\|	frac_unmapped	frac_unmapped	`seqtool-frac_unmapped`
\|\|	frac_dupes	frac_dupes	`seqtool-frac_dupes`
\|\|	frac_reads_on_target	frac_reads_on_target	`seqtool-frac_reads_on_target`
\|\|	frac_reads_off_target	frac_reads_off_target	`seqtool-frac_reads_off_target`
\|\|	frac_pairs_on_target	frac_pairs_on_target	`seqtool-frac_pairs_on_target`
\|\|	frac_pairs_off_target	frac_pairs_off_target	`seqtool-frac_pairs_off_target`
\|\|	frac_proper_pairs	frac_proper_pairs	`seqtool-frac_proper_pairs`
\|\|	frac_bases_gt30x	frac_bases_gt30x	`seqtool-frac_bases_gt30x`
\|\|	frac_bases_gt100x	frac_bases_gt100x	`seqtool-frac_bases_gt100x`
\|\|	frag_size_q20	frag_size_q20	`seqtool-frag_size_q20`
\|\|	frag_size_median	frag_size_median	`seqtool-frag_size_median`
\|\|	frag_size_q80	frag_size_q80	`seqtool-frag_size_q80`
\|\|	frag_size_mean	frag_size_mean	`seqtool-frag_size_mean`
\|\|	frag_size_std	frag_size_std	`seqtool-frag_size_std`
\|\|	n_q20	n_q20	`seqtool-n_q20`
\|\|	n_q25	n_q25	`seqtool-n_q25`
\|\|	n_q30	n_q30	`seqtool-n_q30`
\|\|	n_bases	n_bases	`seqtool-n_bases`
\|\|	min_depth	min_depth	`seqtool-min_depth`
\|\|	mean_depth	mean_depth	`seqtool-mean_depth`
\|\|	cv_depth	cv_depth	`seqtool-cv_depth`
\|\|	max_depth	max_depth	`seqtool-max_depth`
\|\|	q1_depth	q1_depth	`seqtool-q1_depth`
\|\|	q5_depth	q5_depth	`seqtool-q5_depth`
\|\|	q50_depth	q50_depth	`seqtool-q50_depth`
\|\|	q95_depth	q95_depth	`seqtool-q95_depth`
\|\|	q99_depth	q99_depth	`seqtool-q99_depth`
\|\|	lt100x	lt100x	`seqtool-lt100x`
\|\|	lt700x	lt700x	`seqtool-lt700x`
\|\|	n_bases_gt30x	n_bases_gt30x	`seqtool-n_bases_gt30x`
\|\|	n_bases_gt100x	n_bases_gt100x	`seqtool-n_bases_gt100x`
\|\|	gc_0.0	gc_0.0	`seqtool-gc_0_0`
\|\|	gc_0.05	gc_0.05	`seqtool-gc_0_05`
\|\|	gc_0.1	gc_0.1	`seqtool-gc_0_1`
\|\|	gc_0.15	gc_0.15	`seqtool-gc_0_15`
\|\|	gc_0.2	gc_0.2	`seqtool-gc_0_2`
\|\|	gc_0.25	gc_0.25	`seqtool-gc_0_25`
\|\|	gc_0.3	gc_0.3	`seqtool-gc_0_3`
\|\|	gc_0.35	gc_0.35	`seqtool-gc_0_35`
\|\|	gc_0.4	gc_0.4	`seqtool-gc_0_4`
\|\|	gc_0.45	gc_0.45	`seqtool-gc_0_45`
\|\|	gc_0.5	gc_0.5	`seqtool-gc_0_5`
\|\|	gc_0.55	gc_0.55	`seqtool-gc_0_55`
\|\|	gc_0.6	gc_0.6	`seqtool-gc_0_6`
\|\|	gc_0.65	gc_0.65	`seqtool-gc_0_65`
\|\|	gc_0.7	gc_0.7	`seqtool-gc_0_7`
\|\|	gc_0.75	gc_0.75	`seqtool-gc_0_75`
\|\|	gc_0.8	gc_0.8	`seqtool-gc_0_8`
\|\|	gc_0.85	gc_0.85	`seqtool-gc_0_85`
\|\|	gc_0.9	gc_0.9	`seqtool-gc_0_9`
\|\|	gc_0.95	gc_0.95	`seqtool-gc_0_95`
\|\|	gc_1.0	gc_1.0	`seqtool-gc_1_0`
\|\|	bed	bed	`seqtool-bed`
\|\|	saturation_at_1000000_reads	saturation_at_1000000_reads	`seqtool-saturation_at_1000000_reads`
\|\|	roi_size	roi_size	`seqtool-roi_size`
\|\|	contam	contam	`seqtool-contam`
\|\|	n_sites	n_sites	`seqtool-n_sites`
\|\|	loglik	loglik	`seqtool-loglik`
\|\|	lrt	lrt	`seqtool-lrt`
\|\|	bed_base_count	bed_base_count	`seqtool-bed_base_count`

Depth Stats - all_targets

Depth and read QC statistics for all_targets panel.

Showing ⁴⁸/₄₈ rows and ²⁶/₂₆ columns.

Sample Name	reads	unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases
659_Kh-T1-TDNA-1_A23MHWWLT4_1.md	1148633740.0	10778.0	495613609.0	0.6	247800950.0	0.7	0.3	0.9	0.1	212.0	330.0	504.0	243471242.0	1.0	209088079.0	34383163.0	351839741.0	143763090.0	360.5	136.9	653020131.0	1.0	0.9	0.9	171109105582.0
659_Lx-T1-TDNA-1_A23MHWWLT4_1.md	519456.0	1575.0	150826.0	0.7	74624.0	0.6	0.3	0.7	0.3	114.0	168.0	254.0	71706.0	1.0	51478.0	20228.0	97162.0	52089.0	188.7	69.1	368630.0	1.0	0.9	0.9	71291258.0
659_bR4-T1-TDNA-1_A23MHWWLT4_1.md	1626177526.0	12090.0	538501316.0	0.7	269244142.0	0.7	0.3	0.8	0.2	186.0	300.0	452.0	265227300.0	1.0	221530409.0	43696891.0	375098411.0	163390815.0	325.6	125.4	1087676210.0	1.0	0.9	0.9	240562768521.0
659_bgw-T1-TDNA-1_A23MHWWLT4_1.md	1291405768.0	10495.0	459515071.0	0.6	229751975.0	0.7	0.3	0.8	0.2	147.0	229.0	353.0	227261313.0	1.0	183377946.0	43883367.0	326594147.0	132910429.0	256.2	100.5	831890697.0	1.0	0.9	0.9	186979004009.0
659_cAd-T1-TDNA-1_A23MHWWLT4_1.md	1226343906.0	13369.0	422067019.0	0.7	211026495.0	0.7	0.3	0.8	0.2	160.0	261.0	393.0	208942262.0	1.0	170458019.0	38484243.0	294566764.0	127486886.0	283.9	110.2	804276887.0	1.0	0.9	0.9	179620428592.0
659_cVw-T1-TDNA-1_A23MHWWLT4_1.md	1576897808.0	14175.0	610911450.0	0.6	305448176.0	0.7	0.3	0.8	0.2	174.0	283.0	439.0	301761814.0	1.0	255426017.0	46335797.0	442860527.0	168036748.0	312.2	125.1	965986358.0	1.0	0.9	0.9	232333842578.0
659_cfy-T1-TDNA-1_A23MHWWLT4_1.md	1403539190.0	12045.0	617987665.0	0.6	308987428.0	0.7	0.3	0.8	0.2	155.0	242.0	369.0	306598912.0	1.0	257708355.0	48890557.0	460453835.0	157521785.0	268.2	103.4	785551525.0	1.0	0.9	0.9	204507932474.0
659_cuO-T1-TDNA-1_A23MHWWLT4_1.md	176289574.0	2203.0	59175620.0	0.7	29586559.0	0.7	0.3	0.8	0.2	117.0	184.0	278.0	29221804.0	1.0	22429511.0	6792293.0	41685018.0	17488399.0	203.0	77.6	117113954.0	1.0	0.9	0.9	24377819747.0
659_d0M-T1-TDNA-1_A23MHWWLT4_1.md	1236217452.0	10003.0	489075159.0	0.6	244532174.0	0.7	0.3	0.8	0.2	178.0	277.0	426.0	240956121.0	1.0	203916116.0	37040005.0	351411780.0	137653376.0	307.6	119.9	747142293.0	1.0	0.9	0.9	182720151414.0
659_dm4-T1-TDNA-1_A23MHWWLT4_1.md	1096629484.0	13225.0	433407238.0	0.6	216696773.0	0.7	0.3	0.8	0.2	106.0	152.0	218.0	214615370.0	1.0	161611828.0	53003542.0	313134446.0	120259567.0	165.8	54.7	663222246.0	1.0	1.0	1.0	145785669943.0
659_eKx-T1-TDNA-1_A23MHWWLT4_1.md	227242.0	1268.0	64616.0	0.7	31671.0	0.6	0.4	0.8	0.2	130.0	206.0	319.0	29752.0	0.9	22389.0	7363.0	40376.0	22972.0	230.8	91.6	162626.0	1.0	0.9	0.9	32118322.0
1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.md	525074166.0	9685.0	242580675.0	0.5	121285175.0	0.5	0.5	0.5	0.5	82.0	111.0	154.0	118427202.0	1.0	63001252.0	55425950.0	125754964.0	116816026.0	120.4	35.6	282493491.0	1.0	1.0	1.0	60545354240.0
1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.md	980339122.0	11505.0	439171060.0	0.6	219579493.0	0.7	0.3	0.8	0.2	115.0	170.0	255.0	215974394.0	1.0	166408985.0	49565409.0	317060194.0	122099361.0	189.8	68.8	541168062.0	1.0	0.9	0.9	134995127654.0
1029_FRC-T1-TDNA-1_A23MHWWLT4_1.md	1419885166.0	13228.0	496581566.0	0.7	248283728.0	0.7	0.3	0.8	0.2	145.0	241.0	383.0	243160562.0	1.0	193026404.0	50134158.0	340552239.0	156016099.0	271.0	113.1	923303600.0	1.0	0.9	0.9	205206534005.0
1029_FZX-T1-TDNA-1_A23MHWWLT4_1.md	1266149634.0	12186.0	520981319.0	0.6	260484080.0	0.7	0.3	0.8	0.2	166.0	283.0	446.0	254224451.0	1.0	209897980.0	44326471.0	362883265.0	158085868.0	312.3	130.2	745168315.0	1.0	0.9	0.9	185591717028.0
1029_HTI-T1-TDNA-1_A23MHWWLT4_1.md	1448569390.0	16383.0	595864436.0	0.6	297923632.0	0.7	0.3	0.8	0.2	136.0	211.0	324.0	292883861.0	1.0	232130750.0	60753111.0	425314542.0	170533511.0	235.9	90.7	852704954.0	1.0	0.9	0.9	207316963842.0
1029_I9B-T1-TDNA-1_A23MHWWLT4_1.md	1544443570.0	14779.0	568052946.0	0.6	284018591.0	0.7	0.3	0.8	0.2	155.0	259.0	408.0	278325127.0	1.0	226313084.0	52012043.0	396047337.0	171990830.0	288.7	119.6	976390624.0	1.0	0.9	0.9	224528050972.0
1029_IWL-T1-TDNA-1_A23MHWWLT4_1.md	697641300.0	10291.0	297285814.0	0.6	148637553.0	0.7	0.3	0.7	0.3	102.0	144.0	208.0	146857592.0	1.0	107241619.0	39615973.0	208573478.0	88702045.0	158.8	52.4	400355486.0	1.0	0.9	0.9	91026129218.0
1029_N5D-T1-TDNA-1_A23MHWWLT4_1.md	2048146770.0	20102.0	753355706.0	0.6	376667164.0	0.7	0.3	0.8	0.2	172.0	296.0	464.0	367451897.0	1.0	298570494.0	68881403.0	507089099.0	246246505.0	324.6	135.5	1294791064.0	1.0	0.9	0.9	299801627797.0
1029_T05-T1-TDNA-1_A23MHWWLT4_1.md	1538215770.0	14402.0	537285328.0	0.7	268634957.0	0.7	0.3	0.8	0.2	156.0	262.0	413.0	262507724.0	1.0	210500349.0	52007375.0	365692449.0	171578477.0	291.2	121.0	1000930442.0	1.0	0.9	0.9	223724945620.0
1047_JG-T1-TDNA-1_A23MHWWLT4_1.md	3083091320.0	38363.0	975304779.0	0.7	487632713.0	0.7	0.3	0.8	0.2	136.0	202.0	309.0	482811481.0	1.0	381570426.0	101241055.0	694377953.0	280888463.0	227.3	85.0	2107786541.0	1.0	0.9	0.9	440613719037.0
1136_00H-T1-TDNA-1_A23MHWWLT4_1.md	1357084376.0	12467.0	564335704.0	0.6	282161091.0	0.7	0.3	0.9	0.1	181.0	316.0	495.0	275961650.0	1.0	235673772.0	40287878.0	399734656.0	164588581.0	343.7	143.4	792748672.0	1.0	0.9	0.9	200256919585.0
1136_3LU-T1-TDNA-1_A23MHWWLT4_1.md	1428880482.0	13137.0	556512118.0	0.6	278248983.0	0.7	0.3	0.9	0.1	182.0	322.0	508.0	272672703.0	1.0	232588193.0	40084510.0	392303397.0	164195584.0	350.8	148.6	872368364.0	1.0	0.9	0.9	210529749834.0
1136_3MV-T1-TDNA-1_A23MHWWLT4_1.md	1247664000.0	14630.0	520471679.0	0.6	260228055.0	0.7	0.3	0.8	0.2	164.0	277.0	438.0	255381333.0	1.0	215199578.0	40181755.0	373361334.0	147095715.0	308.0	128.3	727192321.0	1.0	0.9	0.9	182964140627.0
1136_3U6-T1-TDNA-1_A23MHWWLT4_1.md	1931213300.0	20010.0	719269743.0	0.6	359624328.0	0.7	0.3	0.8	0.2	160.0	267.0	424.0	353339878.0	1.0	298792142.0	54547736.0	522428975.0	196820758.0	298.7	125.9	1211943557.0	1.0	0.9	0.9	282241843658.0
1136_3WJ-T1-TDNA-1_A23MHWWLT4_1.md	746414230.0	6731.0	337811345.0	0.5	168902050.0	0.7	0.3	0.8	0.2	128.0	199.0	308.0	165463416.0	1.0	127677803.0	37785613.0	235662769.0	102141845.0	223.9	87.7	408602885.0	1.0	0.9	0.9	105506096457.0
1136_4GR-T1-TDNA-1_A23MHWWLT4_1.md	1040220240.0	10242.0	479396723.0	0.5	239692918.0	0.7	0.3	0.8	0.2	137.0	218.0	345.0	235786995.0	1.0	192372711.0	43414284.0	349767820.0	129618661.0	247.7	100.9	560823517.0	1.0	0.9	0.9	149105254405.0
1136_4XR-T1-TDNA-1_A23MHWWLT4_1.md	1198380686.0	10644.0	526903639.0	0.6	263446115.0	0.7	0.3	0.8	0.2	162.0	266.0	410.0	259883109.0	1.0	217576597.0	42306512.0	383140785.0	143752210.0	292.9	116.9	671477047.0	1.0	0.9	0.9	175536769179.0
1136_4Z5-T1-TDNA-1_A23MHWWLT4_1.md	1513892006.0	19666.0	489402082.0	0.7	244690891.0	0.7	0.3	0.8	0.2	113.0	168.0	257.0	240081788.0	1.0	182511176.0	57570612.0	346282751.0	143099665.0	190.2	71.6	1024489924.0	1.0	0.9	0.9	208518040149.0
1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.md	809484368.0	8646.0	416233569.0	0.5	208112211.0	0.7	0.3	0.8	0.2	130.0	203.0	312.0	205389449.0	1.0	167286484.0	38102965.0	309354512.0	106870411.0	227.2	88.2	393250799.0	1.0	0.9	0.9	114870693862.0
1136_5KC-T1-TDNA-1_A23MHWWLT4_1.md	980697938.0	8025.0	502742878.0	0.5	251367062.0	0.7	0.3	0.8	0.2	152.0	254.0	397.0	248792028.0	1.0	211160926.0	37631102.0	375906978.0	126827875.0	281.5	115.5	477955060.0	1.0	0.9	0.9	142446157414.0
1136_5L2-T1-TDNA-1_A23MHWWLT4_1.md	998315166.0	8999.0	471656702.0	0.5	235823459.0	0.7	0.3	0.9	0.1	165.0	279.0	436.0	233085278.0	1.0	198413328.0	34671950.0	346384217.0	125263486.0	307.2	126.4	526658464.0	1.0	0.9	0.9	146277740745.0
1136_5Q-T1-TDNA-1_A23MHWWLT4_1.md	1203678152.0	493022.0	539332623.0	0.6	269419074.0	0.7	0.3	0.8	0.2	164.0	272.0	420.0	265467673.0	1.0	222605894.0	42861779.0	390475336.0	148364265.0	299.0	120.0	664345529.0	1.0	0.9	0.9	176312354948.0
1136_5TB-T1-TDNA-1_A23MHWWLT4_1.md	1823089358.0	19133.0	663741800.0	0.6	331860944.0	0.7	0.3	0.8	0.2	142.0	226.0	349.0	327020011.0	1.0	265561152.0	61458859.0	479558449.0	184164218.0	252.0	99.6	1159347558.0	1.0	0.9	0.9	261776636390.0
1136_6G2-T1-TDNA-1_A23MHWWLT4_1.md	1081074494.0	10323.0	498930824.0	0.5	249459929.0	0.7	0.3	0.8	0.2	139.0	224.0	353.0	245634966.0	1.0	203263622.0	42371344.0	367864313.0	131056188.0	252.7	103.1	582143670.0	1.0	0.9	0.9	154930705871.0
1136_6TL-T1-TDNA-1_A23MHWWLT4_1.md	896285704.0	7758.0	403169800.0	0.6	201580757.0	0.7	0.3	0.8	0.2	133.0	213.0	336.0	199039409.0	1.0	160791603.0	38247806.0	293420016.0	109742026.0	240.6	97.9	493115904.0	1.0	0.9	0.9	127819297640.0
1136_7GC-T1-TDNA-1_A23MHWWLT4_1.md	1525524812.0	16430.0	583796096.0	0.6	291889483.0	0.7	0.3	0.8	0.2	132.0	209.0	321.0	287762562.0	1.0	231240273.0	56522289.0	425127385.0	158652281.0	232.7	90.7	941728716.0	1.0	0.9	0.9	216356305435.0
1136_7OW-T1-TDNA-1_A23MHWWLT4_1.md	1292740676.0	11895.0	550934406.0	0.6	275460855.0	0.7	0.3	0.8	0.2	161.0	268.0	419.0	271263035.0	1.0	227832714.0	43430321.0	398981850.0	151940661.0	296.8	121.5	741806270.0	1.0	0.9	0.9	188792883561.0
1136_8DV-T1-TDNA-1_A23MHWWLT4_1.md	902492764.0	9531.0	384818695.0	0.6	192404276.0	0.7	0.3	0.8	0.2	118.0	180.0	290.0	189554688.0	1.0	148052807.0	41501881.0	276212465.0	108596699.0	210.9	87.3	517674069.0	1.0	0.9	0.9	125146025075.0
1136_27F-T1-TDNA-1_A23MHWWLT4_1.md	2051161300.0	24095.0	740879491.0	0.6	370427287.0	0.7	0.3	0.8	0.2	139.0	220.0	341.0	364575574.0	1.0	302959827.0	61615747.0	551891540.0	188963856.0	246.5	98.0	1310281809.0	1.0	0.9	0.9	293685423514.0
1136_76X-T1-TDNA-1_A23MHWWLT4_1.md	1081414144.0	10101.0	530451435.0	0.5	265220316.0	0.7	0.3	0.8	0.2	135.0	215.0	330.0	260968417.0	1.0	209838318.0	51130099.0	384928706.0	145512628.0	238.9	93.4	550962709.0	1.0	0.9	0.9	154240364314.0
1136_81F-T1-TDNA-1_A23MHWWLT4_1.md	1170861098.0	14485.0	511916090.0	0.6	255950517.0	0.7	0.3	0.7	0.3	102.0	144.0	207.0	251154490.0	1.0	177525261.0	73629229.0	347001207.0	164900398.0	157.9	51.7	658945008.0	1.0	0.9	0.9	151732043577.0
1136_85O-T1-TDNA-1_A23MHWWLT4_1.md	860977808.0	10042.0	385341887.0	0.6	192665595.0	0.7	0.3	0.8	0.2	133.0	217.0	343.0	189090783.0	1.0	152369934.0	36720849.0	276418461.0	108913384.0	245.0	101.4	475635921.0	1.0	0.9	0.9	122641549988.0
1136_86S-T1-TDNA-1_A23MHWWLT4_1.md	1415215252.0	13868.0	549776105.0	0.6	274880777.0	0.7	0.3	0.8	0.2	137.0	218.0	340.0	271513271.0	1.0	221016928.0	50496343.0	401420236.0	148342001.0	244.5	97.6	865439147.0	1.0	0.9	0.9	202273421300.0
1136_87O-T1-TDNA-1_A23MHWWLT4_1.md	1289899336.0	13338.0	567249384.0	0.6	283617652.0	0.7	0.3	0.8	0.2	141.0	230.0	364.0	280543946.0	1.0	231216192.0	49327754.0	416276751.0	150959295.0	259.6	107.3	722649952.0	1.0	0.9	0.9	185760910018.0
1136_253-T1-TDNA-1_A23MHWWLT4_1.md	1291015638.0	10971.0	517975318.0	0.6	258981722.0	0.7	0.3	0.8	0.2	165.0	276.0	433.0	252890964.0	1.0	207436310.0	45454654.0	359005559.0	158958788.0	305.4	125.6	773040320.0	1.0	0.9	0.9	188639083725.0
FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1.md	1256062814.0	13001.0	583069765.0	0.5	291527927.0	0.7	0.3	0.9	0.1	197.0	333.0	507.0	286980924.0	1.0	250821236.0	36159688.0	427399639.0	155657125.0	357.4	141.4	672993049.0	1.0	0.9	0.9	185904350293.0
NTC_0002_0015_A23MHWWLT4_1.md	41412.0	22.0	2698.0	0.9	1338.0	0.1	0.9	0.6	0.4	119.0	194.0	307.0	322.0	0.2	203.0	119.0	370.0	2306.0	218.6	92.6	38714.0	0.9	0.6	0.6	6230752.0

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: seqtool_depth_stats_xgen_exome_hyb_panel_v2_targets_hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity_bed_table

Sort	Column	Description	ID
\|\|	reads	reads	`seqtool-reads`
\|\|	unmapped	unmapped	`seqtool-unmapped`
\|\|	frac_unmapped	frac_unmapped	`seqtool-frac_unmapped`
\|\|	unique_reads	unique_reads	`seqtool-unique_reads`
\|\|	frac_dupes	frac_dupes	`seqtool-frac_dupes`
\|\|	pairs	pairs	`seqtool-pairs`
\|\|	frac_reads_on_target	frac_reads_on_target	`seqtool-frac_reads_on_target`
\|\|	frac_reads_off_target	frac_reads_off_target	`seqtool-frac_reads_off_target`
\|\|	frac_pairs_on_target	frac_pairs_on_target	`seqtool-frac_pairs_on_target`
\|\|	frac_pairs_off_target	frac_pairs_off_target	`seqtool-frac_pairs_off_target`
\|\|	frag_size_q20	frag_size_q20	`seqtool-frag_size_q20`
\|\|	frag_size_median	frag_size_median	`seqtool-frag_size_median`
\|\|	frag_size_q80	frag_size_q80	`seqtool-frag_size_q80`
\|\|	proper_pairs	proper_pairs	`seqtool-proper_pairs`
\|\|	frac_proper_pairs	frac_proper_pairs	`seqtool-frac_proper_pairs`
\|\|	pairs_on_target	pairs_on_target	`seqtool-pairs_on_target`
\|\|	pairs_off_target	pairs_off_target	`seqtool-pairs_off_target`
\|\|	reads_on_target	reads_on_target	`seqtool-reads_on_target`
\|\|	reads_off_target	reads_off_target	`seqtool-reads_off_target`
\|\|	frag_size_mean	frag_size_mean	`seqtool-frag_size_mean`
\|\|	frag_size_std	frag_size_std	`seqtool-frag_size_std`
\|\|	dupes	dupes	`seqtool-dupes`
\|\|	n_q20	n_q20	`seqtool-n_q20`
\|\|	n_q25	n_q25	`seqtool-n_q25`
\|\|	n_q30	n_q30	`seqtool-n_q30`
\|\|	n_bases	n_bases	`seqtool-n_bases`

Depth Stats - all_probes

Depth and read QC statistics for all_probes panel.

Showing ⁴⁸/₄₈ rows and ²⁶/₂₆ columns.

Sample Name	reads	unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases
659_Kh-T1-TDNA-1_A23MHWWLT4_1.md	1148633740.0	10778.0	495613609.0	0.6	247800950.0	0.7	0.3	0.9	0.1	212.0	330.0	504.0	243471242.0	1.0	209394091.0	34077151.0	365540674.0	130062157.0	360.5	136.9	653020131.0	1.0	0.9	0.9	171109105582.0
659_Lx-T1-TDNA-1_A23MHWWLT4_1.md	519456.0	1575.0	150826.0	0.7	74624.0	0.7	0.3	0.7	0.3	114.0	168.0	254.0	71706.0	1.0	51698.0	20008.0	99740.0	49511.0	188.7	69.1	368630.0	1.0	0.9	0.9	71291258.0
659_bR4-T1-TDNA-1_A23MHWWLT4_1.md	1626177526.0	12090.0	538501316.0	0.7	269244142.0	0.7	0.3	0.8	0.2	186.0	300.0	452.0	265227300.0	1.0	221936522.0	43290778.0	390324529.0	148164697.0	325.6	125.4	1087676210.0	1.0	0.9	0.9	240562768521.0
659_bgw-T1-TDNA-1_A23MHWWLT4_1.md	1291405768.0	10495.0	459515071.0	0.6	229751975.0	0.7	0.3	0.8	0.2	147.0	229.0	353.0	227261313.0	1.0	183850059.0	43411254.0	338204772.0	121299804.0	256.2	100.5	831890697.0	1.0	0.9	0.9	186979004009.0
659_cAd-T1-TDNA-1_A23MHWWLT4_1.md	1226343906.0	13369.0	422067019.0	0.7	211026495.0	0.7	0.3	0.8	0.2	160.0	261.0	393.0	208942262.0	1.0	170859617.0	38082645.0	306503233.0	115550417.0	283.9	110.2	804276887.0	1.0	0.9	0.9	179620428592.0
659_cVw-T1-TDNA-1_A23MHWWLT4_1.md	1576897808.0	14175.0	610911450.0	0.6	305448176.0	0.8	0.2	0.8	0.2	174.0	283.0	439.0	301761814.0	1.0	255884218.0	45877596.0	458795427.0	152101848.0	312.2	125.1	965986358.0	1.0	0.9	0.9	232333842578.0
659_cfy-T1-TDNA-1_A23MHWWLT4_1.md	1403539190.0	12045.0	617987665.0	0.6	308987428.0	0.8	0.2	0.8	0.2	155.0	242.0	369.0	306598912.0	1.0	258250065.0	48348847.0	475695693.0	142279927.0	268.2	103.4	785551525.0	1.0	0.9	0.9	204507932474.0
659_cuO-T1-TDNA-1_A23MHWWLT4_1.md	176289574.0	2203.0	59175620.0	0.7	29586559.0	0.7	0.3	0.8	0.2	117.0	184.0	278.0	29221804.0	1.0	22515869.0	6705935.0	42965150.0	16208267.0	203.0	77.6	117113954.0	1.0	0.9	0.9	24377819747.0
659_d0M-T1-TDNA-1_A23MHWWLT4_1.md	1236217452.0	10003.0	489075159.0	0.6	244532174.0	0.7	0.3	0.8	0.2	178.0	277.0	426.0	240956121.0	1.0	204311097.0	36645024.0	364814131.0	124251025.0	307.6	119.9	747142293.0	1.0	0.9	0.9	182720151414.0
659_dm4-T1-TDNA-1_A23MHWWLT4_1.md	1096629484.0	13225.0	433407238.0	0.6	216696773.0	0.7	0.3	0.8	0.2	106.0	152.0	218.0	214615370.0	1.0	162222402.0	52392968.0	319102596.0	114291417.0	165.8	54.7	663222246.0	1.0	1.0	1.0	145785669943.0
659_eKx-T1-TDNA-1_A23MHWWLT4_1.md	227242.0	1268.0	64616.0	0.7	31671.0	0.6	0.3	0.8	0.2	130.0	206.0	319.0	29752.0	0.9	22467.0	7285.0	41744.0	21604.0	230.8	91.6	162626.0	1.0	0.9	0.9	32118322.0
1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.md	525074166.0	9685.0	242580675.0	0.5	121285175.0	0.5	0.5	0.5	0.5	82.0	111.0	154.0	118427202.0	1.0	63396762.0	55030440.0	127250449.0	115320541.0	120.4	35.6	282493491.0	1.0	1.0	1.0	60545354240.0
1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.md	980339122.0	11505.0	439171060.0	0.6	219579493.0	0.7	0.3	0.8	0.2	115.0	170.0	255.0	215974394.0	1.0	166978314.0	48996080.0	324161324.0	114998231.0	189.8	68.8	541168062.0	1.0	0.9	0.9	134995127654.0
1029_FRC-T1-TDNA-1_A23MHWWLT4_1.md	1419885166.0	13228.0	496581566.0	0.7	248283728.0	0.7	0.3	0.8	0.2	145.0	241.0	383.0	243160562.0	1.0	193499886.0	49660676.0	352243239.0	144325099.0	271.0	113.1	923303600.0	1.0	0.9	0.9	205206534005.0
1029_FZX-T1-TDNA-1_A23MHWWLT4_1.md	1266149634.0	12186.0	520981319.0	0.6	260484080.0	0.7	0.3	0.8	0.2	166.0	283.0	446.0	254224451.0	1.0	210303160.0	43921291.0	375697333.0	145271800.0	312.3	130.2	745168315.0	1.0	0.9	0.9	185591717028.0
1029_HTI-T1-TDNA-1_A23MHWWLT4_1.md	1448569390.0	16383.0	595864436.0	0.6	297923632.0	0.7	0.3	0.8	0.2	136.0	211.0	324.0	292883861.0	1.0	232731237.0	60152624.0	437599302.0	158248751.0	235.9	90.7	852704954.0	1.0	0.9	0.9	207316963842.0
1029_I9B-T1-TDNA-1_A23MHWWLT4_1.md	1544443570.0	14779.0	568052946.0	0.6	284018591.0	0.7	0.3	0.8	0.2	155.0	259.0	408.0	278325127.0	1.0	226805658.0	51519469.0	409815336.0	158222831.0	288.7	119.6	976390624.0	1.0	0.9	0.9	224528050972.0
1029_IWL-T1-TDNA-1_A23MHWWLT4_1.md	697641300.0	10291.0	297285814.0	0.6	148637553.0	0.7	0.3	0.7	0.3	102.0	144.0	208.0	146857592.0	1.0	107707532.0	39150060.0	212374823.0	84900700.0	158.8	52.4	400355486.0	1.0	0.9	0.9	91026129218.0
1029_N5D-T1-TDNA-1_A23MHWWLT4_1.md	2048146770.0	20102.0	753355706.0	0.6	376667164.0	0.7	0.3	0.8	0.2	172.0	296.0	464.0	367451897.0	1.0	299180606.0	68271291.0	526414311.0	226921293.0	324.6	135.5	1294791064.0	1.0	0.9	0.9	299801627797.0
1029_T05-T1-TDNA-1_A23MHWWLT4_1.md	1538215770.0	14402.0	537285328.0	0.7	268634957.0	0.7	0.3	0.8	0.2	156.0	262.0	413.0	262507724.0	1.0	210970200.0	51537524.0	378924153.0	158346773.0	291.2	121.0	1000930442.0	1.0	0.9	0.9	223724945620.0
1047_JG-T1-TDNA-1_A23MHWWLT4_1.md	3083091320.0	38363.0	975304779.0	0.7	487632713.0	0.7	0.3	0.8	0.2	136.0	202.0	309.0	482811481.0	1.0	382747210.0	100064271.0	717342654.0	257923762.0	227.3	85.0	2107786541.0	1.0	0.9	0.9	440613719037.0
1136_00H-T1-TDNA-1_A23MHWWLT4_1.md	1357084376.0	12467.0	564335704.0	0.6	282161091.0	0.7	0.3	0.9	0.1	181.0	316.0	495.0	275961650.0	1.0	236068724.0	39892926.0	414268677.0	150054560.0	343.7	143.4	792748672.0	1.0	0.9	0.9	200256919585.0
1136_3LU-T1-TDNA-1_A23MHWWLT4_1.md	1428880482.0	13137.0	556512118.0	0.6	278248983.0	0.7	0.3	0.9	0.1	182.0	322.0	508.0	272672703.0	1.0	232971056.0	39701647.0	406687096.0	149811885.0	350.8	148.6	872368364.0	1.0	0.9	0.9	210529749834.0
1136_3MV-T1-TDNA-1_A23MHWWLT4_1.md	1247664000.0	14630.0	520471679.0	0.6	260228055.0	0.7	0.3	0.8	0.2	164.0	277.0	438.0	255381333.0	1.0	215618832.0	39762501.0	386232254.0	134224795.0	308.0	128.3	727192321.0	1.0	0.9	0.9	182964140627.0
1136_3U6-T1-TDNA-1_A23MHWWLT4_1.md	1931213300.0	20010.0	719269743.0	0.6	359624328.0	0.8	0.2	0.8	0.2	160.0	267.0	424.0	353339878.0	1.0	299379391.0	53960487.0	540052900.0	179196833.0	298.7	125.9	1211943557.0	1.0	0.9	0.9	282241843658.0
1136_3WJ-T1-TDNA-1_A23MHWWLT4_1.md	746414230.0	6731.0	337811345.0	0.5	168902050.0	0.7	0.3	0.8	0.2	128.0	199.0	308.0	165463416.0	1.0	128050729.0	37412687.0	242300548.0	95504066.0	223.9	87.7	408602885.0	1.0	0.9	0.9	105506096457.0
1136_4GR-T1-TDNA-1_A23MHWWLT4_1.md	1040220240.0	10242.0	479396723.0	0.5	239692918.0	0.8	0.2	0.8	0.2	137.0	218.0	345.0	235786995.0	1.0	192846076.0	42940919.0	359964201.0	119422280.0	247.7	100.9	560823517.0	1.0	0.9	0.9	149105254405.0
1136_4XR-T1-TDNA-1_A23MHWWLT4_1.md	1198380686.0	10644.0	526903639.0	0.6	263446115.0	0.8	0.2	0.8	0.2	162.0	266.0	410.0	259883109.0	1.0	217996438.0	41886671.0	395860165.0	131032830.0	292.9	116.9	671477047.0	1.0	0.9	0.9	175536769179.0
1136_4Z5-T1-TDNA-1_A23MHWWLT4_1.md	1513892006.0	19666.0	489402082.0	0.7	244690891.0	0.7	0.3	0.8	0.2	113.0	168.0	257.0	240081788.0	1.0	183135836.0	56945952.0	354262693.0	135119723.0	190.2	71.6	1024489924.0	1.0	0.9	0.9	208518040149.0
1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.md	809484368.0	8646.0	416233569.0	0.5	208112211.0	0.8	0.2	0.8	0.2	130.0	203.0	312.0	205389449.0	1.0	167730933.0	37658516.0	317652725.0	98572198.0	227.2	88.2	393250799.0	1.0	0.9	0.9	114870693862.0
1136_5KC-T1-TDNA-1_A23MHWWLT4_1.md	980697938.0	8025.0	502742878.0	0.5	251367062.0	0.8	0.2	0.9	0.1	152.0	254.0	397.0	248792028.0	1.0	211580533.0	37211495.0	387568199.0	115166654.0	281.5	115.5	477955060.0	1.0	0.9	0.9	142446157414.0
1136_5L2-T1-TDNA-1_A23MHWWLT4_1.md	998315166.0	8999.0	471656702.0	0.5	235823459.0	0.8	0.2	0.9	0.1	165.0	279.0	436.0	233085278.0	1.0	198774179.0	34311099.0	358053530.0	113594173.0	307.2	126.4	526658464.0	1.0	0.9	0.9	146277740745.0
1136_5Q-T1-TDNA-1_A23MHWWLT4_1.md	1203678152.0	493022.0	539332623.0	0.6	269419074.0	0.7	0.3	0.8	0.2	164.0	272.0	420.0	265467673.0	1.0	223017804.0	42449869.0	403476542.0	135363059.0	299.0	120.0	664345529.0	1.0	0.9	0.9	176312354948.0
1136_5TB-T1-TDNA-1_A23MHWWLT4_1.md	1823089358.0	19133.0	663741800.0	0.6	331860944.0	0.7	0.3	0.8	0.2	142.0	226.0	349.0	327020011.0	1.0	266218249.0	60801762.0	494455916.0	169266751.0	252.0	99.6	1159347558.0	1.0	0.9	0.9	261776636390.0
1136_6G2-T1-TDNA-1_A23MHWWLT4_1.md	1081074494.0	10323.0	498930824.0	0.5	249459929.0	0.8	0.2	0.8	0.2	139.0	224.0	353.0	245634966.0	1.0	203773477.0	41861489.0	378886852.0	120033649.0	252.7	103.1	582143670.0	1.0	0.9	0.9	154930705871.0
1136_6TL-T1-TDNA-1_A23MHWWLT4_1.md	896285704.0	7758.0	403169800.0	0.6	201580757.0	0.7	0.3	0.8	0.2	133.0	213.0	336.0	199039409.0	1.0	161180729.0	37858680.0	302031196.0	101130846.0	240.6	97.9	493115904.0	1.0	0.9	0.9	127819297640.0
1136_7GC-T1-TDNA-1_A23MHWWLT4_1.md	1525524812.0	16430.0	583796096.0	0.6	291889483.0	0.7	0.3	0.8	0.2	132.0	209.0	321.0	287762562.0	1.0	231857633.0	55904929.0	437164432.0	146615234.0	232.7	90.7	941728716.0	1.0	0.9	0.9	216356305435.0
1136_7OW-T1-TDNA-1_A23MHWWLT4_1.md	1292740676.0	11895.0	550934406.0	0.6	275460855.0	0.7	0.3	0.8	0.2	161.0	268.0	419.0	271263035.0	1.0	228281716.0	42981319.0	412476814.0	138445697.0	296.8	121.5	741806270.0	1.0	0.9	0.9	188792883561.0
1136_8DV-T1-TDNA-1_A23MHWWLT4_1.md	902492764.0	9531.0	384818695.0	0.6	192404276.0	0.7	0.3	0.8	0.2	118.0	180.0	290.0	189554688.0	1.0	148541338.0	41013350.0	283153627.0	101655537.0	210.9	87.3	517674069.0	1.0	0.9	0.9	125146025075.0
1136_27F-T1-TDNA-1_A23MHWWLT4_1.md	2051161300.0	24095.0	740879491.0	0.6	370427287.0	0.8	0.2	0.8	0.2	139.0	220.0	341.0	364575574.0	1.0	303726972.0	60848602.0	567952109.0	172903287.0	246.5	98.0	1310281809.0	1.0	0.9	0.9	293685423514.0
1136_76X-T1-TDNA-1_A23MHWWLT4_1.md	1081414144.0	10101.0	530451435.0	0.5	265220316.0	0.7	0.3	0.8	0.2	135.0	215.0	330.0	260968417.0	1.0	210373243.0	50595174.0	395685393.0	134755941.0	238.9	93.4	550962709.0	1.0	0.9	0.9	154240364314.0
1136_81F-T1-TDNA-1_A23MHWWLT4_1.md	1170861098.0	14485.0	511916090.0	0.6	255950517.0	0.7	0.3	0.7	0.3	102.0	144.0	207.0	251154490.0	1.0	178311469.0	72843021.0	352774038.0	159127567.0	157.9	51.7	658945008.0	1.0	0.9	0.9	151732043577.0
1136_85O-T1-TDNA-1_A23MHWWLT4_1.md	860977808.0	10042.0	385341887.0	0.6	192665595.0	0.7	0.3	0.8	0.2	133.0	217.0	343.0	189090783.0	1.0	152756684.0	36334099.0	284681128.0	100650717.0	245.0	101.4	475635921.0	1.0	0.9	0.9	122641549988.0
1136_86S-T1-TDNA-1_A23MHWWLT4_1.md	1415215252.0	13868.0	549776105.0	0.6	274880777.0	0.8	0.2	0.8	0.2	137.0	218.0	340.0	271513271.0	1.0	221571041.0	49942230.0	413578086.0	136184151.0	244.5	97.6	865439147.0	1.0	0.9	0.9	202273421300.0
1136_87O-T1-TDNA-1_A23MHWWLT4_1.md	1289899336.0	13338.0	567249384.0	0.6	283617652.0	0.8	0.2	0.8	0.2	141.0	230.0	364.0	280543946.0	1.0	231736213.0	48807733.0	428619250.0	138616796.0	259.6	107.3	722649952.0	1.0	0.9	0.9	185760910018.0
1136_253-T1-TDNA-1_A23MHWWLT4_1.md	1291015638.0	10971.0	517975318.0	0.6	258981722.0	0.7	0.3	0.8	0.2	165.0	276.0	433.0	252890964.0	1.0	207859087.0	45031877.0	371822094.0	146142253.0	305.4	125.6	773040320.0	1.0	0.9	0.9	188639083725.0
FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1.md	1256062814.0	13001.0	583069765.0	0.5	291527927.0	0.8	0.2	0.9	0.1	197.0	333.0	507.0	286980924.0	1.0	251193206.0	35787718.0	442825911.0	140230853.0	357.4	141.4	672993049.0	1.0	0.9	0.9	185904350293.0
NTC_0002_0015_A23MHWWLT4_1.md	41412.0	22.0	2698.0	0.9	1338.0	0.1	0.9	0.6	0.4	119.0	194.0	307.0	322.0	0.2	203.0	119.0	376.0	2300.0	218.6	92.6	38714.0	0.9	0.6	0.6	6230752.0

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: seqtool_depth_stats_xgen_exome_hyb_panel_v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint_bed_table

Sort	Column	Description	ID
\|\|	reads	reads	`seqtool-reads`
\|\|	unmapped	unmapped	`seqtool-unmapped`
\|\|	frac_unmapped	frac_unmapped	`seqtool-frac_unmapped`
\|\|	unique_reads	unique_reads	`seqtool-unique_reads`
\|\|	frac_dupes	frac_dupes	`seqtool-frac_dupes`
\|\|	pairs	pairs	`seqtool-pairs`
\|\|	frac_reads_on_target	frac_reads_on_target	`seqtool-frac_reads_on_target`
\|\|	frac_reads_off_target	frac_reads_off_target	`seqtool-frac_reads_off_target`
\|\|	frac_pairs_on_target	frac_pairs_on_target	`seqtool-frac_pairs_on_target`
\|\|	frac_pairs_off_target	frac_pairs_off_target	`seqtool-frac_pairs_off_target`
\|\|	frag_size_q20	frag_size_q20	`seqtool-frag_size_q20`
\|\|	frag_size_median	frag_size_median	`seqtool-frag_size_median`
\|\|	frag_size_q80	frag_size_q80	`seqtool-frag_size_q80`
\|\|	proper_pairs	proper_pairs	`seqtool-proper_pairs`
\|\|	frac_proper_pairs	frac_proper_pairs	`seqtool-frac_proper_pairs`
\|\|	pairs_on_target	pairs_on_target	`seqtool-pairs_on_target`
\|\|	pairs_off_target	pairs_off_target	`seqtool-pairs_off_target`
\|\|	reads_on_target	reads_on_target	`seqtool-reads_on_target`
\|\|	reads_off_target	reads_off_target	`seqtool-reads_off_target`
\|\|	frag_size_mean	frag_size_mean	`seqtool-frag_size_mean`
\|\|	frag_size_std	frag_size_std	`seqtool-frag_size_std`
\|\|	dupes	dupes	`seqtool-dupes`
\|\|	n_q20	n_q20	`seqtool-n_q20`
\|\|	n_q25	n_q25	`seqtool-n_q25`
\|\|	n_q30	n_q30	`seqtool-n_q30`
\|\|	n_bases	n_bases	`seqtool-n_bases`

Depth Stats - boosted_depth

Depth and read QC statistics for boosted_depth panel.

Showing ⁴⁸/₄₈ rows and ²⁶/₂₆ columns.

Sample Name	reads	unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases
659_Kh-T1-TDNA-1_A23MHWWLT4_1.md	1148633740.0	10778.0	495613609.0	0.6	247800950.0	0.4	0.6	0.6	0.4	212.0	330.0	504.0	243471242.0	1.0	137236723.0	106234519.0	209400024.0	286202807.0	360.5	136.9	653020131.0	1.0	0.9	0.9	171109105582.0
659_Lx-T1-TDNA-1_A23MHWWLT4_1.md	519456.0	1575.0	150826.0	0.7	74624.0	0.5	0.5	0.6	0.4	114.0	168.0	254.0	71706.0	1.0	42618.0	29088.0	79395.0	69856.0	188.7	69.1	368630.0	1.0	0.9	0.9	71291258.0
659_bR4-T1-TDNA-1_A23MHWWLT4_1.md	1626177526.0	12090.0	538501316.0	0.7	269244142.0	0.4	0.6	0.6	0.4	186.0	300.0	452.0	265227300.0	1.0	153828037.0	111399263.0	241561785.0	296927441.0	325.6	125.4	1087676210.0	1.0	0.9	0.9	240562768521.0
659_bgw-T1-TDNA-1_A23MHWWLT4_1.md	1291405768.0	10495.0	459515071.0	0.6	229751975.0	0.5	0.5	0.6	0.4	147.0	229.0	353.0	227261313.0	1.0	135920413.0	91340900.0	232446009.0	227058567.0	256.2	100.5	831890697.0	1.0	0.9	0.9	186979004009.0
659_cAd-T1-TDNA-1_A23MHWWLT4_1.md	1226343906.0	13369.0	422067019.0	0.7	211026495.0	0.5	0.5	0.6	0.4	160.0	261.0	393.0	208942262.0	1.0	124456702.0	84485560.0	204057512.0	217996138.0	283.9	110.2	804276887.0	1.0	0.9	0.9	179620428592.0
659_cVw-T1-TDNA-1_A23MHWWLT4_1.md	1576897808.0	14175.0	610911450.0	0.6	305448176.0	0.4	0.6	0.6	0.4	174.0	283.0	439.0	301761814.0	1.0	170404360.0	131357454.0	274170837.0	336726438.0	312.2	125.1	965986358.0	1.0	0.9	0.9	232333842578.0
659_cfy-T1-TDNA-1_A23MHWWLT4_1.md	1403539190.0	12045.0	617987665.0	0.6	308987428.0	0.5	0.5	0.6	0.4	155.0	242.0	369.0	306598912.0	1.0	174592409.0	132006503.0	294909373.0	323066247.0	268.2	103.4	785551525.0	1.0	0.9	0.9	204507932474.0
659_cuO-T1-TDNA-1_A23MHWWLT4_1.md	176289574.0	2203.0	59175620.0	0.7	29586559.0	0.5	0.5	0.6	0.4	117.0	184.0	278.0	29221804.0	1.0	17800139.0	11421665.0	32449157.0	26724260.0	203.0	77.6	117113954.0	1.0	0.9	0.9	24377819747.0
659_d0M-T1-TDNA-1_A23MHWWLT4_1.md	1236217452.0	10003.0	489075159.0	0.6	244532174.0	0.5	0.5	0.6	0.4	178.0	277.0	426.0	240956121.0	1.0	141588587.0	99367534.0	228137562.0	260927594.0	307.6	119.9	747142293.0	1.0	0.9	0.9	182720151414.0
659_dm4-T1-TDNA-1_A23MHWWLT4_1.md	1096629484.0	13225.0	433407238.0	0.6	216696773.0	0.6	0.4	0.6	0.4	106.0	152.0	218.0	214615370.0	1.0	124660811.0	89954559.0	238774441.0	194619572.0	165.8	54.7	663222246.0	1.0	1.0	1.0	145785669943.0
659_eKx-T1-TDNA-1_A23MHWWLT4_1.md	227242.0	1268.0	64616.0	0.7	31671.0	0.5	0.5	0.6	0.4	130.0	206.0	319.0	29752.0	0.9	18202.0	11550.0	32113.0	31235.0	230.8	91.6	162626.0	1.0	0.9	0.9	32118322.0
1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.md	525074166.0	9685.0	242580675.0	0.5	121285175.0	0.4	0.6	0.4	0.6	82.0	111.0	154.0	118427202.0	1.0	49340322.0	69086880.0	98121281.0	144449709.0	120.4	35.6	282493491.0	1.0	1.0	1.0	60545354240.0
1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.md	980339122.0	11505.0	439171060.0	0.6	219579493.0	0.5	0.5	0.6	0.4	115.0	170.0	255.0	215974394.0	1.0	126526466.0	89447928.0	236776505.0	202383050.0	189.8	68.8	541168062.0	1.0	0.9	0.9	134995127654.0
1029_FRC-T1-TDNA-1_A23MHWWLT4_1.md	1419885166.0	13228.0	496581566.0	0.7	248283728.0	0.5	0.5	0.6	0.4	145.0	241.0	383.0	243160562.0	1.0	143702255.0	99458307.0	242715134.0	253853204.0	271.0	113.1	923303600.0	1.0	0.9	0.9	205206534005.0
1029_FZX-T1-TDNA-1_A23MHWWLT4_1.md	1266149634.0	12186.0	520981319.0	0.6	260484080.0	0.5	0.5	0.6	0.4	166.0	283.0	446.0	254224451.0	1.0	149363235.0	104861216.0	242463857.0	278505276.0	312.3	130.2	745168315.0	1.0	0.9	0.9	185591717028.0
1029_HTI-T1-TDNA-1_A23MHWWLT4_1.md	1448569390.0	16383.0	595864436.0	0.6	297923632.0	0.5	0.5	0.6	0.4	136.0	211.0	324.0	292883861.0	1.0	169983560.0	122900301.0	300902279.0	294945774.0	235.9	90.7	852704954.0	1.0	0.9	0.9	207316963842.0
1029_I9B-T1-TDNA-1_A23MHWWLT4_1.md	1544443570.0	14779.0	568052946.0	0.6	284018591.0	0.5	0.5	0.6	0.4	155.0	259.0	408.0	278325127.0	1.0	164040239.0	114284888.0	272206131.0	295832036.0	288.7	119.6	976390624.0	1.0	0.9	0.9	224528050972.0
1029_IWL-T1-TDNA-1_A23MHWWLT4_1.md	697641300.0	10291.0	297285814.0	0.6	148637553.0	0.5	0.5	0.6	0.4	102.0	144.0	208.0	146857592.0	1.0	84081300.0	62776292.0	162011494.0	135264029.0	158.8	52.4	400355486.0	1.0	0.9	0.9	91026129218.0
1029_N5D-T1-TDNA-1_A23MHWWLT4_1.md	2048146770.0	20102.0	753355706.0	0.6	376667164.0	0.5	0.5	0.6	0.4	172.0	296.0	464.0	367451897.0	1.0	221224633.0	146227264.0	354543771.0	398791833.0	324.6	135.5	1294791064.0	1.0	0.9	0.9	299801627797.0
1029_T05-T1-TDNA-1_A23MHWWLT4_1.md	1538215770.0	14402.0	537285328.0	0.7	268634957.0	0.5	0.5	0.6	0.4	156.0	262.0	413.0	262507724.0	1.0	155968861.0	106538863.0	257574536.0	279696390.0	291.2	121.0	1000930442.0	1.0	0.9	0.9	223724945620.0
1047_JG-T1-TDNA-1_A23MHWWLT4_1.md	3083091320.0	38363.0	975304779.0	0.7	487632713.0	0.5	0.5	0.6	0.4	136.0	202.0	309.0	482811481.0	1.0	294034501.0	188776980.0	520543025.0	454723391.0	227.3	85.0	2107786541.0	1.0	0.9	0.9	440613719037.0
1136_00H-T1-TDNA-1_A23MHWWLT4_1.md	1357084376.0	12467.0	564335704.0	0.6	282161091.0	0.4	0.6	0.6	0.4	181.0	316.0	495.0	275961650.0	1.0	160808278.0	115153372.0	251376289.0	312946948.0	343.7	143.4	792748672.0	1.0	0.9	0.9	200256919585.0
1136_3LU-T1-TDNA-1_A23MHWWLT4_1.md	1428880482.0	13137.0	556512118.0	0.6	278248983.0	0.4	0.6	0.6	0.4	182.0	322.0	508.0	272672703.0	1.0	156414582.0	116258121.0	241818523.0	314680458.0	350.8	148.6	872368364.0	1.0	0.9	0.9	210529749834.0
1136_3MV-T1-TDNA-1_A23MHWWLT4_1.md	1247664000.0	14630.0	520471679.0	0.6	260228055.0	0.5	0.5	0.6	0.4	164.0	277.0	438.0	255381333.0	1.0	150733980.0	104647353.0	245507999.0	274949050.0	308.0	128.3	727192321.0	1.0	0.9	0.9	182964140627.0
1136_3U6-T1-TDNA-1_A23MHWWLT4_1.md	1931213300.0	20010.0	719269743.0	0.6	359624328.0	0.5	0.5	0.6	0.4	160.0	267.0	424.0	353339878.0	1.0	207233604.0	146106274.0	340174248.0	379075485.0	298.7	125.9	1211943557.0	1.0	0.9	0.9	282241843658.0
1136_3WJ-T1-TDNA-1_A23MHWWLT4_1.md	746414230.0	6731.0	337811345.0	0.5	168902050.0	0.5	0.5	0.6	0.4	128.0	199.0	308.0	165463416.0	1.0	96770145.0	68693271.0	173780613.0	164024001.0	223.9	87.7	408602885.0	1.0	0.9	0.9	105506096457.0
1136_4GR-T1-TDNA-1_A23MHWWLT4_1.md	1040220240.0	10242.0	479396723.0	0.5	239692918.0	0.5	0.5	0.6	0.4	137.0	218.0	345.0	235786995.0	1.0	138973767.0	96813228.0	242916751.0	236469730.0	247.7	100.9	560823517.0	1.0	0.9	0.9	149105254405.0
1136_4XR-T1-TDNA-1_A23MHWWLT4_1.md	1198380686.0	10644.0	526903639.0	0.6	263446115.0	0.5	0.5	0.6	0.4	162.0	266.0	410.0	259883109.0	1.0	149656071.0	110227038.0	247788348.0	279104647.0	292.9	116.9	671477047.0	1.0	0.9	0.9	175536769179.0
1136_4Z5-T1-TDNA-1_A23MHWWLT4_1.md	1513892006.0	19666.0	489402082.0	0.7	244690891.0	0.5	0.5	0.6	0.4	113.0	168.0	257.0	240081788.0	1.0	133760331.0	106321457.0	248510911.0	240871505.0	190.2	71.6	1024489924.0	1.0	0.9	0.9	208518040149.0
1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.md	809484368.0	8646.0	416233569.0	0.5	208112211.0	0.5	0.5	0.6	0.4	130.0	203.0	312.0	205389449.0	1.0	117603453.0	87785996.0	209950942.0	206273981.0	227.2	88.2	393250799.0	1.0	0.9	0.9	114870693862.0
1136_5KC-T1-TDNA-1_A23MHWWLT4_1.md	980697938.0	8025.0	502742878.0	0.5	251367062.0	0.5	0.5	0.6	0.4	152.0	254.0	397.0	248792028.0	1.0	142590776.0	106201252.0	239152076.0	263582777.0	281.5	115.5	477955060.0	1.0	0.9	0.9	142446157414.0
1136_5L2-T1-TDNA-1_A23MHWWLT4_1.md	998315166.0	8999.0	471656702.0	0.5	235823459.0	0.5	0.5	0.6	0.4	165.0	279.0	436.0	233085278.0	1.0	131009015.0	102076263.0	212395418.0	259252285.0	307.2	126.4	526658464.0	1.0	0.9	0.9	146277740745.0
1136_5Q-T1-TDNA-1_A23MHWWLT4_1.md	1203678152.0	493022.0	539332623.0	0.6	269419074.0	0.5	0.5	0.6	0.4	164.0	272.0	420.0	265467673.0	1.0	152982449.0	112485224.0	251671787.0	287167814.0	299.0	120.0	664345529.0	1.0	0.9	0.9	176312354948.0
1136_5TB-T1-TDNA-1_A23MHWWLT4_1.md	1823089358.0	19133.0	663741800.0	0.6	331860944.0	0.5	0.5	0.6	0.4	142.0	226.0	349.0	327020011.0	1.0	194019698.0	133000313.0	336859056.0	326863611.0	252.0	99.6	1159347558.0	1.0	0.9	0.9	261776636390.0
1136_6G2-T1-TDNA-1_A23MHWWLT4_1.md	1081074494.0	10323.0	498930824.0	0.5	249459929.0	0.5	0.5	0.6	0.4	139.0	224.0	353.0	245634966.0	1.0	149189237.0	96445729.0	259687820.0	239232681.0	252.7	103.1	582143670.0	1.0	0.9	0.9	154930705871.0
1136_6TL-T1-TDNA-1_A23MHWWLT4_1.md	896285704.0	7758.0	403169800.0	0.6	201580757.0	0.5	0.5	0.6	0.4	133.0	213.0	336.0	199039409.0	1.0	110986686.0	88052723.0	193844720.0	209317322.0	240.6	97.9	493115904.0	1.0	0.9	0.9	127819297640.0
1136_7GC-T1-TDNA-1_A23MHWWLT4_1.md	1525524812.0	16430.0	583796096.0	0.6	291889483.0	0.5	0.5	0.6	0.4	132.0	209.0	321.0	287762562.0	1.0	168757857.0	119004705.0	300068398.0	283711268.0	232.7	90.7	941728716.0	1.0	0.9	0.9	216356305435.0
1136_7OW-T1-TDNA-1_A23MHWWLT4_1.md	1292740676.0	11895.0	550934406.0	0.6	275460855.0	0.5	0.5	0.6	0.4	161.0	268.0	419.0	271263035.0	1.0	157194594.0	114068441.0	258621934.0	292300577.0	296.8	121.5	741806270.0	1.0	0.9	0.9	188792883561.0
1136_8DV-T1-TDNA-1_A23MHWWLT4_1.md	902492764.0	9531.0	384818695.0	0.6	192404276.0	0.5	0.5	0.6	0.4	118.0	180.0	290.0	189554688.0	1.0	115402068.0	74152620.0	210869807.0	173939357.0	210.9	87.3	517674069.0	1.0	0.9	0.9	125146025075.0
1136_27F-T1-TDNA-1_A23MHWWLT4_1.md	2051161300.0	24095.0	740879491.0	0.6	370427287.0	0.5	0.5	0.6	0.4	139.0	220.0	341.0	364575574.0	1.0	213556613.0	151018961.0	373256377.0	367599019.0	246.5	98.0	1310281809.0	1.0	0.9	0.9	293685423514.0
1136_76X-T1-TDNA-1_A23MHWWLT4_1.md	1081414144.0	10101.0	530451435.0	0.5	265220316.0	0.5	0.5	0.6	0.4	135.0	215.0	330.0	260968417.0	1.0	150491537.0	110476880.0	266003103.0	264438231.0	238.9	93.4	550962709.0	1.0	0.9	0.9	154240364314.0
1136_81F-T1-TDNA-1_A23MHWWLT4_1.md	1170861098.0	14485.0	511916090.0	0.6	255950517.0	0.5	0.5	0.6	0.4	102.0	144.0	207.0	251154490.0	1.0	139653065.0	111501425.0	270569487.0	241332118.0	157.9	51.7	658945008.0	1.0	0.9	0.9	151732043577.0
1136_85O-T1-TDNA-1_A23MHWWLT4_1.md	860977808.0	10042.0	385341887.0	0.6	192665595.0	0.5	0.5	0.6	0.4	133.0	217.0	343.0	189090783.0	1.0	110921125.0	78169658.0	193606769.0	191725076.0	245.0	101.4	475635921.0	1.0	0.9	0.9	122641549988.0
1136_86S-T1-TDNA-1_A23MHWWLT4_1.md	1415215252.0	13868.0	549776105.0	0.6	274880777.0	0.5	0.5	0.6	0.4	137.0	218.0	340.0	271513271.0	1.0	157604981.0	113908290.0	274852565.0	274909672.0	244.5	97.6	865439147.0	1.0	0.9	0.9	202273421300.0
1136_87O-T1-TDNA-1_A23MHWWLT4_1.md	1289899336.0	13338.0	567249384.0	0.6	283617652.0	0.5	0.5	0.6	0.4	141.0	230.0	364.0	280543946.0	1.0	166707494.0	113836452.0	287531801.0	279704245.0	259.6	107.3	722649952.0	1.0	0.9	0.9	185760910018.0
1136_253-T1-TDNA-1_A23MHWWLT4_1.md	1291015638.0	10971.0	517975318.0	0.6	258981722.0	0.5	0.5	0.6	0.4	165.0	276.0	433.0	252890964.0	1.0	150196766.0	102694198.0	245420706.0	272543641.0	305.4	125.6	773040320.0	1.0	0.9	0.9	188639083725.0
FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1.md	1256062814.0	13001.0	583069765.0	0.5	291527927.0	0.4	0.6	0.6	0.4	197.0	333.0	507.0	286980924.0	1.0	165947627.0	121033297.0	258558603.0	324498161.0	357.4	141.4	672993049.0	1.0	0.9	0.9	185904350293.0
NTC_0002_0015_A23MHWWLT4_1.md	41412.0	22.0	2698.0	0.9	1338.0	0.1	0.9	0.5	0.5	119.0	194.0	307.0	322.0	0.2	169.0	153.0	304.0	2372.0	218.6	92.6	38714.0	0.9	0.6	0.6	6230752.0

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: seqtool_depth_stats_altera_v3_targets_postQC_hg38_bed_table

Sort	Column	Description	ID
\|\|	reads	reads	`seqtool-reads`
\|\|	unmapped	unmapped	`seqtool-unmapped`
\|\|	frac_unmapped	frac_unmapped	`seqtool-frac_unmapped`
\|\|	unique_reads	unique_reads	`seqtool-unique_reads`
\|\|	frac_dupes	frac_dupes	`seqtool-frac_dupes`
\|\|	pairs	pairs	`seqtool-pairs`
\|\|	frac_reads_on_target	frac_reads_on_target	`seqtool-frac_reads_on_target`
\|\|	frac_reads_off_target	frac_reads_off_target	`seqtool-frac_reads_off_target`
\|\|	frac_pairs_on_target	frac_pairs_on_target	`seqtool-frac_pairs_on_target`
\|\|	frac_pairs_off_target	frac_pairs_off_target	`seqtool-frac_pairs_off_target`
\|\|	frag_size_q20	frag_size_q20	`seqtool-frag_size_q20`
\|\|	frag_size_median	frag_size_median	`seqtool-frag_size_median`
\|\|	frag_size_q80	frag_size_q80	`seqtool-frag_size_q80`
\|\|	proper_pairs	proper_pairs	`seqtool-proper_pairs`
\|\|	frac_proper_pairs	frac_proper_pairs	`seqtool-frac_proper_pairs`
\|\|	pairs_on_target	pairs_on_target	`seqtool-pairs_on_target`
\|\|	pairs_off_target	pairs_off_target	`seqtool-pairs_off_target`
\|\|	reads_on_target	reads_on_target	`seqtool-reads_on_target`
\|\|	reads_off_target	reads_off_target	`seqtool-reads_off_target`
\|\|	frag_size_mean	frag_size_mean	`seqtool-frag_size_mean`
\|\|	frag_size_std	frag_size_std	`seqtool-frag_size_std`
\|\|	dupes	dupes	`seqtool-dupes`
\|\|	n_q20	n_q20	`seqtool-n_q20`
\|\|	n_q25	n_q25	`seqtool-n_q25`
\|\|	n_q30	n_q30	`seqtool-n_q30`
\|\|	n_bases	n_bases	`seqtool-n_bases`

Depth Stats - coding_depth

Depth and read QC statistics for coding_depth panel.

Showing ⁴⁸/₄₈ rows and ²⁶/₂₆ columns.

Sample Name	reads	unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases
659_Kh-T1-TDNA-1_A23MHWWLT4_1.md	1148633740.0	10778.0	495613609.0	0.6	247800950.0	0.1	0.9	0.1	0.9	212.0	330.0	504.0	243471242.0	1.0	32962634.0	210508608.0	49179059.0	446423772.0	360.5	136.9	653020131.0	1.0	0.9	0.9	171109105582.0
659_Lx-T1-TDNA-1_A23MHWWLT4_1.md	519456.0	1575.0	150826.0	0.7	74624.0	0.1	0.9	0.1	0.9	114.0	168.0	254.0	71706.0	1.0	4565.0	67141.0	8354.0	140897.0	188.7	69.1	368630.0	1.0	0.9	0.9	71291258.0
659_bR4-T1-TDNA-1_A23MHWWLT4_1.md	1626177526.0	12090.0	538501316.0	0.7	269244142.0	0.1	0.9	0.1	0.9	186.0	300.0	452.0	265227300.0	1.0	31190809.0	234036491.0	47534353.0	490954873.0	325.6	125.4	1087676210.0	1.0	0.9	0.9	240562768521.0
659_bgw-T1-TDNA-1_A23MHWWLT4_1.md	1291405768.0	10495.0	459515071.0	0.6	229751975.0	0.1	0.9	0.1	0.9	147.0	229.0	353.0	227261313.0	1.0	22304013.0	204957300.0	37076600.0	422427976.0	256.2	100.5	831890697.0	1.0	0.9	0.9	186979004009.0
659_cAd-T1-TDNA-1_A23MHWWLT4_1.md	1226343906.0	13369.0	422067019.0	0.7	211026495.0	0.1	0.9	0.1	0.9	160.0	261.0	393.0	208942262.0	1.0	21262461.0	187679801.0	33763837.0	388289813.0	283.9	110.2	804276887.0	1.0	0.9	0.9	179620428592.0
659_cVw-T1-TDNA-1_A23MHWWLT4_1.md	1576897808.0	14175.0	610911450.0	0.6	305448176.0	0.1	0.9	0.1	0.9	174.0	283.0	439.0	301761814.0	1.0	37145398.0	264616416.0	58174108.0	552723167.0	312.2	125.1	965986358.0	1.0	0.9	0.9	232333842578.0
659_cfy-T1-TDNA-1_A23MHWWLT4_1.md	1403539190.0	12045.0	617987665.0	0.6	308987428.0	0.1	0.9	0.1	0.9	155.0	242.0	369.0	306598912.0	1.0	36358293.0	270240619.0	60104243.0	557871377.0	268.2	103.4	785551525.0	1.0	0.9	0.9	204507932474.0
659_cuO-T1-TDNA-1_A23MHWWLT4_1.md	176289574.0	2203.0	59175620.0	0.7	29586559.0	0.1	0.9	0.1	0.9	117.0	184.0	278.0	29221804.0	1.0	2124103.0	27097701.0	3793632.0	55379785.0	203.0	77.6	117113954.0	1.0	0.9	0.9	24377819747.0
659_d0M-T1-TDNA-1_A23MHWWLT4_1.md	1236217452.0	10003.0	489075159.0	0.6	244532174.0	0.1	0.9	0.1	0.9	178.0	277.0	426.0	240956121.0	1.0	28894958.0	212061163.0	45146341.0	443918815.0	307.6	119.9	747142293.0	1.0	0.9	0.9	182720151414.0
659_dm4-T1-TDNA-1_A23MHWWLT4_1.md	1096629484.0	13225.0	433407238.0	0.6	216696773.0	0.1	0.9	0.1	0.9	106.0	152.0	218.0	214615370.0	1.0	16909833.0	197705537.0	32044540.0	401349473.0	165.8	54.7	663222246.0	1.0	1.0	1.0	145785669943.0
659_eKx-T1-TDNA-1_A23MHWWLT4_1.md	227242.0	1268.0	64616.0	0.7	31671.0	0.1	0.9	0.1	0.9	130.0	206.0	319.0	29752.0	0.9	2110.0	27642.0	3652.0	59696.0	230.8	91.6	162626.0	1.0	0.9	0.9	32118322.0
1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.md	525074166.0	9685.0	242580675.0	0.5	121285175.0	0.1	0.9	0.1	0.9	82.0	111.0	154.0	118427202.0	1.0	6135710.0	112291492.0	12174447.0	230396543.0	120.4	35.6	282493491.0	1.0	1.0	1.0	60545354240.0
1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.md	980339122.0	11505.0	439171060.0	0.6	219579493.0	0.1	0.9	0.1	0.9	115.0	170.0	255.0	215974394.0	1.0	19790654.0	196183740.0	36472854.0	402686701.0	189.8	68.8	541168062.0	1.0	0.9	0.9	134995127654.0
1029_FRC-T1-TDNA-1_A23MHWWLT4_1.md	1419885166.0	13228.0	496581566.0	0.7	248283728.0	0.1	0.9	0.1	0.9	145.0	241.0	383.0	243160562.0	1.0	24595108.0	218565454.0	40384595.0	456183743.0	271.0	113.1	923303600.0	1.0	0.9	0.9	205206534005.0
1029_FZX-T1-TDNA-1_A23MHWWLT4_1.md	1266149634.0	12186.0	520981319.0	0.6	260484080.0	0.1	0.9	0.1	0.9	166.0	283.0	446.0	254224451.0	1.0	30609442.0	223615009.0	48391162.0	472577971.0	312.3	130.2	745168315.0	1.0	0.9	0.9	185591717028.0
1029_HTI-T1-TDNA-1_A23MHWWLT4_1.md	1448569390.0	16383.0	595864436.0	0.6	297923632.0	0.1	0.9	0.1	0.9	136.0	211.0	324.0	292883861.0	1.0	29942456.0	262941405.0	51939010.0	543909043.0	235.9	90.7	852704954.0	1.0	0.9	0.9	207316963842.0
1029_I9B-T1-TDNA-1_A23MHWWLT4_1.md	1544443570.0	14779.0	568052946.0	0.6	284018591.0	0.1	0.9	0.1	0.9	155.0	259.0	408.0	278325127.0	1.0	31120142.0	247204985.0	50191502.0	517846665.0	288.7	119.6	976390624.0	1.0	0.9	0.9	224528050972.0
1029_IWL-T1-TDNA-1_A23MHWWLT4_1.md	697641300.0	10291.0	297285814.0	0.6	148637553.0	0.1	0.9	0.1	0.9	102.0	144.0	208.0	146857592.0	1.0	10700014.0	136157578.0	20407261.0	276868262.0	158.8	52.4	400355486.0	1.0	0.9	0.9	91026129218.0
1029_N5D-T1-TDNA-1_A23MHWWLT4_1.md	2048146770.0	20102.0	753355706.0	0.6	376667164.0	0.1	0.9	0.1	0.9	172.0	296.0	464.0	367451897.0	1.0	39961028.0	327490869.0	61664941.0	691670663.0	324.6	135.5	1294791064.0	1.0	0.9	0.9	299801627797.0
1029_T05-T1-TDNA-1_A23MHWWLT4_1.md	1538215770.0	14402.0	537285328.0	0.7	268634957.0	0.1	0.9	0.1	0.9	156.0	262.0	413.0	262507724.0	1.0	27678137.0	234829587.0	44367551.0	492903375.0	291.2	121.0	1000930442.0	1.0	0.9	0.9	223724945620.0
1047_JG-T1-TDNA-1_A23MHWWLT4_1.md	3083091320.0	38363.0	975304779.0	0.7	487632713.0	0.1	0.9	0.1	0.9	136.0	202.0	309.0	482811481.0	1.0	41380004.0	441431477.0	71342706.0	903923710.0	227.3	85.0	2107786541.0	1.0	0.9	0.9	440613719037.0
1136_00H-T1-TDNA-1_A23MHWWLT4_1.md	1357084376.0	12467.0	564335704.0	0.6	282161091.0	0.1	0.9	0.1	0.9	181.0	316.0	495.0	275961650.0	1.0	36093433.0	239868217.0	54657836.0	509665401.0	343.7	143.4	792748672.0	1.0	0.9	0.9	200256919585.0
1136_3LU-T1-TDNA-1_A23MHWWLT4_1.md	1428880482.0	13137.0	556512118.0	0.6	278248983.0	0.1	0.9	0.1	0.9	182.0	322.0	508.0	272672703.0	1.0	35009741.0	237662962.0	52233769.0	504265212.0	350.8	148.6	872368364.0	1.0	0.9	0.9	210529749834.0
1136_3MV-T1-TDNA-1_A23MHWWLT4_1.md	1247664000.0	14630.0	520471679.0	0.6	260228055.0	0.1	0.9	0.1	0.9	164.0	277.0	438.0	255381333.0	1.0	31017050.0	224364283.0	48908616.0	471548433.0	308.0	128.3	727192321.0	1.0	0.9	0.9	182964140627.0
1136_3U6-T1-TDNA-1_A23MHWWLT4_1.md	1931213300.0	20010.0	719269743.0	0.6	359624328.0	0.1	0.9	0.1	0.9	160.0	267.0	424.0	353339878.0	1.0	43951871.0	309388007.0	70092196.0	649157537.0	298.7	125.9	1211943557.0	1.0	0.9	0.9	282241843658.0
1136_3WJ-T1-TDNA-1_A23MHWWLT4_1.md	746414230.0	6731.0	337811345.0	0.5	168902050.0	0.1	0.9	0.1	0.9	128.0	199.0	308.0	165463416.0	1.0	15218521.0	150244895.0	26781425.0	311023189.0	223.9	87.7	408602885.0	1.0	0.9	0.9	105506096457.0
1136_4GR-T1-TDNA-1_A23MHWWLT4_1.md	1040220240.0	10242.0	479396723.0	0.5	239692918.0	0.1	0.9	0.1	0.9	137.0	218.0	345.0	235786995.0	1.0	26375880.0	209411115.0	45130321.0	434256160.0	247.7	100.9	560823517.0	1.0	0.9	0.9	149105254405.0
1136_4XR-T1-TDNA-1_A23MHWWLT4_1.md	1198380686.0	10644.0	526903639.0	0.6	263446115.0	0.1	0.9	0.1	0.9	162.0	266.0	410.0	259883109.0	1.0	31956676.0	227926433.0	51651321.0	475241674.0	292.9	116.9	671477047.0	1.0	0.9	0.9	175536769179.0
1136_4Z5-T1-TDNA-1_A23MHWWLT4_1.md	1513892006.0	19666.0	489402082.0	0.7	244690891.0	0.1	0.9	0.1	0.9	113.0	168.0	257.0	240081788.0	1.0	20963054.0	219118734.0	37918558.0	451463858.0	190.2	71.6	1024489924.0	1.0	0.9	0.9	208518040149.0
1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.md	809484368.0	8646.0	416233569.0	0.5	208112211.0	0.1	0.9	0.1	0.9	130.0	203.0	312.0	205389449.0	1.0	22448482.0	182940967.0	39300750.0	376924173.0	227.2	88.2	393250799.0	1.0	0.9	0.9	114870693862.0
1136_5KC-T1-TDNA-1_A23MHWWLT4_1.md	980697938.0	8025.0	502742878.0	0.5	251367062.0	0.1	0.9	0.1	0.9	152.0	254.0	397.0	248792028.0	1.0	31529594.0	217262434.0	51662643.0	451072210.0	281.5	115.5	477955060.0	1.0	0.9	0.9	142446157414.0
1136_5L2-T1-TDNA-1_A23MHWWLT4_1.md	998315166.0	8999.0	471656702.0	0.5	235823459.0	0.1	0.9	0.1	0.9	165.0	279.0	436.0	233085278.0	1.0	30070649.0	203014629.0	47548664.0	424099039.0	307.2	126.4	526658464.0	1.0	0.9	0.9	146277740745.0
1136_5Q-T1-TDNA-1_A23MHWWLT4_1.md	1203678152.0	493022.0	539332623.0	0.6	269419074.0	0.1	0.9	0.1	0.9	164.0	272.0	420.0	265467673.0	1.0	33171648.0	232296025.0	53286134.0	485553467.0	299.0	120.0	664345529.0	1.0	0.9	0.9	176312354948.0
1136_5TB-T1-TDNA-1_A23MHWWLT4_1.md	1823089358.0	19133.0	663741800.0	0.6	331860944.0	0.1	0.9	0.1	0.9	142.0	226.0	349.0	327020011.0	1.0	34481235.0	292538776.0	58451593.0	605271074.0	252.0	99.6	1159347558.0	1.0	0.9	0.9	261776636390.0
1136_6G2-T1-TDNA-1_A23MHWWLT4_1.md	1081074494.0	10323.0	498930824.0	0.5	249459929.0	0.1	0.9	0.1	0.9	139.0	224.0	353.0	245634966.0	1.0	27484357.0	218150609.0	46755578.0	452164923.0	252.7	103.1	582143670.0	1.0	0.9	0.9	154930705871.0
1136_6TL-T1-TDNA-1_A23MHWWLT4_1.md	896285704.0	7758.0	403169800.0	0.6	201580757.0	0.1	0.9	0.1	0.9	133.0	213.0	336.0	199039409.0	1.0	22076983.0	176962426.0	37730158.0	365431884.0	240.6	97.9	493115904.0	1.0	0.9	0.9	127819297640.0
1136_7GC-T1-TDNA-1_A23MHWWLT4_1.md	1525524812.0	16430.0	583796096.0	0.6	291889483.0	0.1	0.9	0.1	0.9	132.0	209.0	321.0	287762562.0	1.0	29635242.0	258127320.0	51623540.0	532156126.0	232.7	90.7	941728716.0	1.0	0.9	0.9	216356305435.0
1136_7OW-T1-TDNA-1_A23MHWWLT4_1.md	1292740676.0	11895.0	550934406.0	0.6	275460855.0	0.1	0.9	0.1	0.9	161.0	268.0	419.0	271263035.0	1.0	33270567.0	237992468.0	53249737.0	497672774.0	296.8	121.5	741806270.0	1.0	0.9	0.9	188792883561.0
1136_8DV-T1-TDNA-1_A23MHWWLT4_1.md	902492764.0	9531.0	384818695.0	0.6	192404276.0	0.1	0.9	0.1	0.9	118.0	180.0	290.0	189554688.0	1.0	16637186.0	172917502.0	29741434.0	355067730.0	210.9	87.3	517674069.0	1.0	0.9	0.9	125146025075.0
1136_27F-T1-TDNA-1_A23MHWWLT4_1.md	2051161300.0	24095.0	740879491.0	0.6	370427287.0	0.1	0.9	0.1	0.9	139.0	220.0	341.0	364575574.0	1.0	41458909.0	323116665.0	70216155.0	670639241.0	246.5	98.0	1310281809.0	1.0	0.9	0.9	293685423514.0
1136_76X-T1-TDNA-1_A23MHWWLT4_1.md	1081414144.0	10101.0	530451435.0	0.5	265220316.0	0.1	0.9	0.1	0.9	135.0	215.0	330.0	260968417.0	1.0	28994082.0	231974335.0	50267797.0	480173537.0	238.9	93.4	550962709.0	1.0	0.9	0.9	154240364314.0
1136_81F-T1-TDNA-1_A23MHWWLT4_1.md	1170861098.0	14485.0	511916090.0	0.6	255950517.0	0.1	0.9	0.1	0.9	102.0	144.0	207.0	251154490.0	1.0	18924148.0	232230342.0	36369390.0	475532215.0	157.9	51.7	658945008.0	1.0	0.9	0.9	151732043577.0
1136_85O-T1-TDNA-1_A23MHWWLT4_1.md	860977808.0	10042.0	385341887.0	0.6	192665595.0	0.1	0.9	0.1	0.9	133.0	217.0	343.0	189090783.0	1.0	19648436.0	169442347.0	33527065.0	351804780.0	245.0	101.4	475635921.0	1.0	0.9	0.9	122641549988.0
1136_86S-T1-TDNA-1_A23MHWWLT4_1.md	1415215252.0	13868.0	549776105.0	0.6	274880777.0	0.1	0.9	0.1	0.9	137.0	218.0	340.0	271513271.0	1.0	28912516.0	242600755.0	49344110.0	500418127.0	244.5	97.6	865439147.0	1.0	0.9	0.9	202273421300.0
1136_87O-T1-TDNA-1_A23MHWWLT4_1.md	1289899336.0	13338.0	567249384.0	0.6	283617652.0	0.1	0.9	0.1	0.9	141.0	230.0	364.0	280543946.0	1.0	31476474.0	249067472.0	53002780.0	514233266.0	259.6	107.3	722649952.0	1.0	0.9	0.9	185760910018.0
1136_253-T1-TDNA-1_A23MHWWLT4_1.md	1291015638.0	10971.0	517975318.0	0.6	258981722.0	0.1	0.9	0.1	0.9	165.0	276.0	433.0	252890964.0	1.0	28951482.0	223939482.0	45927588.0	472036759.0	305.4	125.6	773040320.0	1.0	0.9	0.9	188639083725.0
FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1.md	1256062814.0	13001.0	583069765.0	0.5	291527927.0	0.1	0.9	0.1	0.9	197.0	333.0	507.0	286980924.0	1.0	40166345.0	246814579.0	61021171.0	522035593.0	357.4	141.4	672993049.0	1.0	0.9	0.9	185904350293.0
NTC_0002_0015_A23MHWWLT4_1.md	41412.0	22.0	2698.0	0.9	1338.0	0.0	1.0	0.1	0.9	119.0	194.0	307.0	322.0	0.2	26.0	296.0	44.0	2632.0	218.6	92.6	38714.0	0.9	0.6	0.6	6230752.0

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: seqtool_depth_stats_altera_v3_targets_coding_postQC_hg38_bed_table

Sort	Column	Description	ID
\|\|	reads	reads	`seqtool-reads`
\|\|	unmapped	unmapped	`seqtool-unmapped`
\|\|	frac_unmapped	frac_unmapped	`seqtool-frac_unmapped`
\|\|	unique_reads	unique_reads	`seqtool-unique_reads`
\|\|	frac_dupes	frac_dupes	`seqtool-frac_dupes`
\|\|	pairs	pairs	`seqtool-pairs`
\|\|	frac_reads_on_target	frac_reads_on_target	`seqtool-frac_reads_on_target`
\|\|	frac_reads_off_target	frac_reads_off_target	`seqtool-frac_reads_off_target`
\|\|	frac_pairs_on_target	frac_pairs_on_target	`seqtool-frac_pairs_on_target`
\|\|	frac_pairs_off_target	frac_pairs_off_target	`seqtool-frac_pairs_off_target`
\|\|	frag_size_q20	frag_size_q20	`seqtool-frag_size_q20`
\|\|	frag_size_median	frag_size_median	`seqtool-frag_size_median`
\|\|	frag_size_q80	frag_size_q80	`seqtool-frag_size_q80`
\|\|	proper_pairs	proper_pairs	`seqtool-proper_pairs`
\|\|	frac_proper_pairs	frac_proper_pairs	`seqtool-frac_proper_pairs`
\|\|	pairs_on_target	pairs_on_target	`seqtool-pairs_on_target`
\|\|	pairs_off_target	pairs_off_target	`seqtool-pairs_off_target`
\|\|	reads_on_target	reads_on_target	`seqtool-reads_on_target`
\|\|	reads_off_target	reads_off_target	`seqtool-reads_off_target`
\|\|	frag_size_mean	frag_size_mean	`seqtool-frag_size_mean`
\|\|	frag_size_std	frag_size_std	`seqtool-frag_size_std`
\|\|	dupes	dupes	`seqtool-dupes`
\|\|	n_q20	n_q20	`seqtool-n_q20`
\|\|	n_q25	n_q25	`seqtool-n_q25`
\|\|	n_q30	n_q30	`seqtool-n_q30`
\|\|	n_bases	n_bases	`seqtool-n_bases`

Depth Stats - noncoding_depth

Depth and read QC statistics for noncoding_depth panel.

Showing ⁴⁸/₄₈ rows and ²⁶/₂₆ columns.

Sample Name	reads	unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases
659_Kh-T1-TDNA-1_A23MHWWLT4_1.md	1148633740.0	10778.0	495613609.0	0.6	247800950.0	0.2	0.8	0.3	0.7	212.0	330.0	504.0	243471242.0	1.0	64330381.0	179140861.0	115173689.0	380429142.0	360.5	136.9	653020131.0	1.0	0.9	0.9	171109105582.0
659_Lx-T1-TDNA-1_A23MHWWLT4_1.md	519456.0	1575.0	150826.0	0.7	74624.0	0.1	0.9	0.1	0.9	114.0	168.0	254.0	71706.0	1.0	7038.0	64668.0	13387.0	135864.0	188.7	69.1	368630.0	1.0	0.9	0.9	71291258.0
659_bR4-T1-TDNA-1_A23MHWWLT4_1.md	1626177526.0	12090.0	538501316.0	0.7	269244142.0	0.2	0.8	0.2	0.8	186.0	300.0	452.0	265227300.0	1.0	59854314.0	205372986.0	107705338.0	430783888.0	325.6	125.4	1087676210.0	1.0	0.9	0.9	240562768521.0
659_bgw-T1-TDNA-1_A23MHWWLT4_1.md	1291405768.0	10495.0	459515071.0	0.6	229751975.0	0.2	0.8	0.2	0.8	147.0	229.0	353.0	227261313.0	1.0	40510947.0	186750366.0	74578575.0	384926001.0	256.2	100.5	831890697.0	1.0	0.9	0.9	186979004009.0
659_cAd-T1-TDNA-1_A23MHWWLT4_1.md	1226343906.0	13369.0	422067019.0	0.7	211026495.0	0.2	0.8	0.2	0.8	160.0	261.0	393.0	208942262.0	1.0	40162857.0	168779405.0	73005370.0	349048280.0	283.9	110.2	804276887.0	1.0	0.9	0.9	179620428592.0
659_cVw-T1-TDNA-1_A23MHWWLT4_1.md	1576897808.0	14175.0	610911450.0	0.6	305448176.0	0.2	0.8	0.2	0.8	174.0	283.0	439.0	301761814.0	1.0	75102695.0	226659119.0	137195080.0	473702195.0	312.2	125.1	965986358.0	1.0	0.9	0.9	232333842578.0
659_cfy-T1-TDNA-1_A23MHWWLT4_1.md	1403539190.0	12045.0	617987665.0	0.6	308987428.0	0.2	0.8	0.2	0.8	155.0	242.0	369.0	306598912.0	1.0	71920944.0	234677968.0	133076921.0	484898699.0	268.2	103.4	785551525.0	1.0	0.9	0.9	204507932474.0
659_cuO-T1-TDNA-1_A23MHWWLT4_1.md	176289574.0	2203.0	59175620.0	0.7	29586559.0	0.1	0.9	0.1	0.9	117.0	184.0	278.0	29221804.0	1.0	3807844.0	25413960.0	7244777.0	51928640.0	203.0	77.6	117113954.0	1.0	0.9	0.9	24377819747.0
659_d0M-T1-TDNA-1_A23MHWWLT4_1.md	1236217452.0	10003.0	489075159.0	0.6	244532174.0	0.2	0.8	0.2	0.8	178.0	277.0	426.0	240956121.0	1.0	55010494.0	185945627.0	99389884.0	389675272.0	307.6	119.9	747142293.0	1.0	0.9	0.9	182720151414.0
659_dm4-T1-TDNA-1_A23MHWWLT4_1.md	1096629484.0	13225.0	433407238.0	0.6	216696773.0	0.1	0.9	0.1	0.9	106.0	152.0	218.0	214615370.0	1.0	29108506.0	185506864.0	56662806.0	376731207.0	165.8	54.7	663222246.0	1.0	1.0	1.0	145785669943.0
659_eKx-T1-TDNA-1_A23MHWWLT4_1.md	227242.0	1268.0	64616.0	0.7	31671.0	0.1	0.9	0.1	0.9	130.0	206.0	319.0	29752.0	0.9	3370.0	26382.0	6211.0	57137.0	230.8	91.6	162626.0	1.0	0.9	0.9	32118322.0
1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.md	525074166.0	9685.0	242580675.0	0.5	121285175.0	0.1	0.9	0.1	0.9	82.0	111.0	154.0	118427202.0	1.0	10202541.0	108224661.0	20418699.0	222152291.0	120.4	35.6	282493491.0	1.0	1.0	1.0	60545354240.0
1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.md	980339122.0	11505.0	439171060.0	0.6	219579493.0	0.1	0.9	0.1	0.9	115.0	170.0	255.0	215974394.0	1.0	31759065.0	184215329.0	60679583.0	378479972.0	189.8	68.8	541168062.0	1.0	0.9	0.9	134995127654.0
1029_FRC-T1-TDNA-1_A23MHWWLT4_1.md	1419885166.0	13228.0	496581566.0	0.7	248283728.0	0.2	0.8	0.2	0.8	145.0	241.0	383.0	243160562.0	1.0	41583148.0	201577414.0	75547305.0	421021033.0	271.0	113.1	923303600.0	1.0	0.9	0.9	205206534005.0
1029_FZX-T1-TDNA-1_A23MHWWLT4_1.md	1266149634.0	12186.0	520981319.0	0.6	260484080.0	0.2	0.8	0.2	0.8	166.0	283.0	446.0	254224451.0	1.0	52076328.0	202148123.0	93208350.0	427760783.0	312.3	130.2	745168315.0	1.0	0.9	0.9	185591717028.0
1029_HTI-T1-TDNA-1_A23MHWWLT4_1.md	1448569390.0	16383.0	595864436.0	0.6	297923632.0	0.2	0.8	0.2	0.8	136.0	211.0	324.0	292883861.0	1.0	51428144.0	241455717.0	95721051.0	500127002.0	235.9	90.7	852704954.0	1.0	0.9	0.9	207316963842.0
1029_I9B-T1-TDNA-1_A23MHWWLT4_1.md	1544443570.0	14779.0	568052946.0	0.6	284018591.0	0.2	0.8	0.2	0.8	155.0	259.0	408.0	278325127.0	1.0	53396997.0	224928130.0	96502494.0	471535673.0	288.7	119.6	976390624.0	1.0	0.9	0.9	224528050972.0
1029_IWL-T1-TDNA-1_A23MHWWLT4_1.md	697641300.0	10291.0	297285814.0	0.6	148637553.0	0.1	0.9	0.1	0.9	102.0	144.0	208.0	146857592.0	1.0	18131144.0	128726448.0	35403149.0	261872374.0	158.8	52.4	400355486.0	1.0	0.9	0.9	91026129218.0
1029_N5D-T1-TDNA-1_A23MHWWLT4_1.md	2048146770.0	20102.0	753355706.0	0.6	376667164.0	0.2	0.8	0.2	0.8	172.0	296.0	464.0	367451897.0	1.0	66845871.0	300606026.0	118217129.0	635118475.0	324.6	135.5	1294791064.0	1.0	0.9	0.9	299801627797.0
1029_T05-T1-TDNA-1_A23MHWWLT4_1.md	1538215770.0	14402.0	537285328.0	0.7	268634957.0	0.2	0.8	0.2	0.8	156.0	262.0	413.0	262507724.0	1.0	46578723.0	215929001.0	83635914.0	453635012.0	291.2	121.0	1000930442.0	1.0	0.9	0.9	223724945620.0
1047_JG-T1-TDNA-1_A23MHWWLT4_1.md	3083091320.0	38363.0	975304779.0	0.7	487632713.0	0.1	0.9	0.2	0.8	136.0	202.0	309.0	482811481.0	1.0	72993997.0	409817484.0	136107766.0	839158650.0	227.3	85.0	2107786541.0	1.0	0.9	0.9	440613719037.0
1136_00H-T1-TDNA-1_A23MHWWLT4_1.md	1357084376.0	12467.0	564335704.0	0.6	282161091.0	0.2	0.8	0.2	0.8	181.0	316.0	495.0	275961650.0	1.0	65995032.0	209966618.0	117583519.0	446739718.0	343.7	143.4	792748672.0	1.0	0.9	0.9	200256919585.0
1136_3LU-T1-TDNA-1_A23MHWWLT4_1.md	1428880482.0	13137.0	556512118.0	0.6	278248983.0	0.2	0.8	0.2	0.8	182.0	322.0	508.0	272672703.0	1.0	67618340.0	205054363.0	121027958.0	435471023.0	350.8	148.6	872368364.0	1.0	0.9	0.9	210529749834.0
1136_3MV-T1-TDNA-1_A23MHWWLT4_1.md	1247664000.0	14630.0	520471679.0	0.6	260228055.0	0.2	0.8	0.2	0.8	164.0	277.0	438.0	255381333.0	1.0	55534674.0	199846659.0	99667106.0	420789943.0	308.0	128.3	727192321.0	1.0	0.9	0.9	182964140627.0
1136_3U6-T1-TDNA-1_A23MHWWLT4_1.md	1931213300.0	20010.0	719269743.0	0.6	359624328.0	0.2	0.8	0.2	0.8	160.0	267.0	424.0	353339878.0	1.0	79082574.0	274257304.0	143105836.0	576143897.0	298.7	125.9	1211943557.0	1.0	0.9	0.9	282241843658.0
1136_3WJ-T1-TDNA-1_A23MHWWLT4_1.md	746414230.0	6731.0	337811345.0	0.5	168902050.0	0.1	0.9	0.2	0.8	128.0	199.0	308.0	165463416.0	1.0	25168904.0	140294512.0	47071884.0	290732730.0	223.9	87.7	408602885.0	1.0	0.9	0.9	105506096457.0
1136_4GR-T1-TDNA-1_A23MHWWLT4_1.md	1040220240.0	10242.0	479396723.0	0.5	239692918.0	0.2	0.8	0.2	0.8	137.0	218.0	345.0	235786995.0	1.0	44231306.0	191555689.0	81688869.0	397697612.0	247.7	100.9	560823517.0	1.0	0.9	0.9	149105254405.0
1136_4XR-T1-TDNA-1_A23MHWWLT4_1.md	1198380686.0	10644.0	526903639.0	0.6	263446115.0	0.2	0.8	0.2	0.8	162.0	266.0	410.0	259883109.0	1.0	58608424.0	201274685.0	106702041.0	420190954.0	292.9	116.9	671477047.0	1.0	0.9	0.9	175536769179.0
1136_4Z5-T1-TDNA-1_A23MHWWLT4_1.md	1513892006.0	19666.0	489402082.0	0.7	244690891.0	0.2	0.8	0.2	0.8	113.0	168.0	257.0	240081788.0	1.0	40401404.0	199680384.0	77709221.0	411673195.0	190.2	71.6	1024489924.0	1.0	0.9	0.9	208518040149.0
1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.md	809484368.0	8646.0	416233569.0	0.5	208112211.0	0.2	0.8	0.2	0.8	130.0	203.0	312.0	205389449.0	1.0	41225613.0	164163836.0	77410252.0	338814671.0	227.2	88.2	393250799.0	1.0	0.9	0.9	114870693862.0
1136_5KC-T1-TDNA-1_A23MHWWLT4_1.md	980697938.0	8025.0	502742878.0	0.5	251367062.0	0.2	0.8	0.2	0.8	152.0	254.0	397.0	248792028.0	1.0	58921486.0	189870542.0	107983866.0	394750987.0	281.5	115.5	477955060.0	1.0	0.9	0.9	142446157414.0
1136_5L2-T1-TDNA-1_A23MHWWLT4_1.md	998315166.0	8999.0	471656702.0	0.5	235823459.0	0.2	0.8	0.3	0.7	165.0	279.0	436.0	233085278.0	1.0	59219861.0	173865417.0	107897986.0	363749717.0	307.2	126.4	526658464.0	1.0	0.9	0.9	146277740745.0
1136_5Q-T1-TDNA-1_A23MHWWLT4_1.md	1203678152.0	493022.0	539332623.0	0.6	269419074.0	0.2	0.8	0.2	0.8	164.0	272.0	420.0	265467673.0	1.0	59969433.0	205498240.0	108873158.0	429966443.0	299.0	120.0	664345529.0	1.0	0.9	0.9	176312354948.0
1136_5TB-T1-TDNA-1_A23MHWWLT4_1.md	1823089358.0	19133.0	663741800.0	0.6	331860944.0	0.2	0.8	0.2	0.8	142.0	226.0	349.0	327020011.0	1.0	59851856.0	267168155.0	110426812.0	553295855.0	252.0	99.6	1159347558.0	1.0	0.9	0.9	261776636390.0
1136_6G2-T1-TDNA-1_A23MHWWLT4_1.md	1081074494.0	10323.0	498930824.0	0.5	249459929.0	0.2	0.8	0.2	0.8	139.0	224.0	353.0	245634966.0	1.0	44569360.0	201065606.0	81858088.0	417062413.0	252.7	103.1	582143670.0	1.0	0.9	0.9	154930705871.0
1136_6TL-T1-TDNA-1_A23MHWWLT4_1.md	896285704.0	7758.0	403169800.0	0.6	201580757.0	0.2	0.8	0.2	0.8	133.0	213.0	336.0	199039409.0	1.0	42357189.0	156682220.0	79336631.0	323825411.0	240.6	97.9	493115904.0	1.0	0.9	0.9	127819297640.0
1136_7GC-T1-TDNA-1_A23MHWWLT4_1.md	1525524812.0	16430.0	583796096.0	0.6	291889483.0	0.2	0.8	0.2	0.8	132.0	209.0	321.0	287762562.0	1.0	51643185.0	236119377.0	96462898.0	487316768.0	232.7	90.7	941728716.0	1.0	0.9	0.9	216356305435.0
1136_7OW-T1-TDNA-1_A23MHWWLT4_1.md	1292740676.0	11895.0	550934406.0	0.6	275460855.0	0.2	0.8	0.2	0.8	161.0	268.0	419.0	271263035.0	1.0	61048482.0	210214553.0	110768905.0	440153606.0	296.8	121.5	741806270.0	1.0	0.9	0.9	188792883561.0
1136_8DV-T1-TDNA-1_A23MHWWLT4_1.md	902492764.0	9531.0	384818695.0	0.6	192404276.0	0.1	0.9	0.1	0.9	118.0	180.0	290.0	189554688.0	1.0	26120802.0	163433886.0	49040453.0	335768711.0	210.9	87.3	517674069.0	1.0	0.9	0.9	125146025075.0
1136_27F-T1-TDNA-1_A23MHWWLT4_1.md	2051161300.0	24095.0	740879491.0	0.6	370427287.0	0.2	0.8	0.2	0.8	139.0	220.0	341.0	364575574.0	1.0	75827771.0	288747803.0	141027137.0	599828259.0	246.5	98.0	1310281809.0	1.0	0.9	0.9	293685423514.0
1136_76X-T1-TDNA-1_A23MHWWLT4_1.md	1081414144.0	10101.0	530451435.0	0.5	265220316.0	0.2	0.8	0.2	0.8	135.0	215.0	330.0	260968417.0	1.0	48823640.0	212144777.0	90593722.0	439847612.0	238.9	93.4	550962709.0	1.0	0.9	0.9	154240364314.0
1136_81F-T1-TDNA-1_A23MHWWLT4_1.md	1170861098.0	14485.0	511916090.0	0.6	255950517.0	0.1	0.9	0.1	0.9	102.0	144.0	207.0	251154490.0	1.0	28654215.0	222500275.0	55903813.0	455997792.0	157.9	51.7	658945008.0	1.0	0.9	0.9	151732043577.0
1136_85O-T1-TDNA-1_A23MHWWLT4_1.md	860977808.0	10042.0	385341887.0	0.6	192665595.0	0.2	0.8	0.2	0.8	133.0	217.0	343.0	189090783.0	1.0	34705327.0	154385456.0	64422327.0	320909518.0	245.0	101.4	475635921.0	1.0	0.9	0.9	122641549988.0
1136_86S-T1-TDNA-1_A23MHWWLT4_1.md	1415215252.0	13868.0	549776105.0	0.6	274880777.0	0.2	0.8	0.2	0.8	137.0	218.0	340.0	271513271.0	1.0	53453429.0	218059842.0	99510443.0	450251794.0	244.5	97.6	865439147.0	1.0	0.9	0.9	202273421300.0
1136_87O-T1-TDNA-1_A23MHWWLT4_1.md	1289899336.0	13338.0	567249384.0	0.6	283617652.0	0.2	0.8	0.2	0.8	141.0	230.0	364.0	280543946.0	1.0	53741402.0	226802544.0	98740308.0	468495738.0	259.6	107.3	722649952.0	1.0	0.9	0.9	185760910018.0
1136_253-T1-TDNA-1_A23MHWWLT4_1.md	1291015638.0	10971.0	517975318.0	0.6	258981722.0	0.2	0.8	0.2	0.8	165.0	276.0	433.0	252890964.0	1.0	49040122.0	203850842.0	87728581.0	430235766.0	305.4	125.6	773040320.0	1.0	0.9	0.9	188639083725.0
FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1.md	1256062814.0	13001.0	583069765.0	0.5	291527927.0	0.2	0.8	0.3	0.7	197.0	333.0	507.0	286980924.0	1.0	75338064.0	211642860.0	134671647.0	448385117.0	357.4	141.4	672993049.0	1.0	0.9	0.9	185904350293.0
NTC_0002_0015_A23MHWWLT4_1.md	41412.0	22.0	2698.0	0.9	1338.0	0.0	1.0	0.1	0.9	119.0	194.0	307.0	322.0	0.2	24.0	298.0	40.0	2636.0	218.6	92.6	38714.0	0.9	0.6	0.6	6230752.0

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: seqtool_depth_stats_altera_v3_targets_noncoding_postQC_hg38_bed_table

Sort	Column	Description	ID
\|\|	reads	reads	`seqtool-reads`
\|\|	unmapped	unmapped	`seqtool-unmapped`
\|\|	frac_unmapped	frac_unmapped	`seqtool-frac_unmapped`
\|\|	unique_reads	unique_reads	`seqtool-unique_reads`
\|\|	frac_dupes	frac_dupes	`seqtool-frac_dupes`
\|\|	pairs	pairs	`seqtool-pairs`
\|\|	frac_reads_on_target	frac_reads_on_target	`seqtool-frac_reads_on_target`
\|\|	frac_reads_off_target	frac_reads_off_target	`seqtool-frac_reads_off_target`
\|\|	frac_pairs_on_target	frac_pairs_on_target	`seqtool-frac_pairs_on_target`
\|\|	frac_pairs_off_target	frac_pairs_off_target	`seqtool-frac_pairs_off_target`
\|\|	frag_size_q20	frag_size_q20	`seqtool-frag_size_q20`
\|\|	frag_size_median	frag_size_median	`seqtool-frag_size_median`
\|\|	frag_size_q80	frag_size_q80	`seqtool-frag_size_q80`
\|\|	proper_pairs	proper_pairs	`seqtool-proper_pairs`
\|\|	frac_proper_pairs	frac_proper_pairs	`seqtool-frac_proper_pairs`
\|\|	pairs_on_target	pairs_on_target	`seqtool-pairs_on_target`
\|\|	pairs_off_target	pairs_off_target	`seqtool-pairs_off_target`
\|\|	reads_on_target	reads_on_target	`seqtool-reads_on_target`
\|\|	reads_off_target	reads_off_target	`seqtool-reads_off_target`
\|\|	frag_size_mean	frag_size_mean	`seqtool-frag_size_mean`
\|\|	frag_size_std	frag_size_std	`seqtool-frag_size_std`
\|\|	dupes	dupes	`seqtool-dupes`
\|\|	n_q20	n_q20	`seqtool-n_q20`
\|\|	n_q25	n_q25	`seqtool-n_q25`
\|\|	n_q30	n_q30	`seqtool-n_q30`
\|\|	n_bases	n_bases	`seqtool-n_bases`

Depth Stats - non_boosted_depth

Depth and read QC statistics for non_boosted_depth panel.

Showing ⁴⁸/₄₈ rows and ²⁶/₂₆ columns.

Sample Name	reads	unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases
659_Kh-T1-TDNA-1_A23MHWWLT4_1.md	1148633740.0	10778.0	495613609.0	0.6	247800950.0	0.4	0.6	0.6	0.4	212.0	330.0	504.0	243471242.0	1.0	137236723.0	106234519.0	209400024.0	286202807.0	360.5	136.9	653020131.0	1.0	0.9	0.9	171109105582.0
659_Lx-T1-TDNA-1_A23MHWWLT4_1.md	519456.0	1575.0	150826.0	0.7	74624.0	0.5	0.5	0.6	0.4	114.0	168.0	254.0	71706.0	1.0	42618.0	29088.0	79395.0	69856.0	188.7	69.1	368630.0	1.0	0.9	0.9	71291258.0
659_bR4-T1-TDNA-1_A23MHWWLT4_1.md	1626177526.0	12090.0	538501316.0	0.7	269244142.0	0.4	0.6	0.6	0.4	186.0	300.0	452.0	265227300.0	1.0	153828037.0	111399263.0	241561785.0	296927441.0	325.6	125.4	1087676210.0	1.0	0.9	0.9	240562768521.0
659_bgw-T1-TDNA-1_A23MHWWLT4_1.md	1291405768.0	10495.0	459515071.0	0.6	229751975.0	0.5	0.5	0.6	0.4	147.0	229.0	353.0	227261313.0	1.0	135920413.0	91340900.0	232446009.0	227058567.0	256.2	100.5	831890697.0	1.0	0.9	0.9	186979004009.0
659_cAd-T1-TDNA-1_A23MHWWLT4_1.md	1226343906.0	13369.0	422067019.0	0.7	211026495.0	0.5	0.5	0.6	0.4	160.0	261.0	393.0	208942262.0	1.0	124456702.0	84485560.0	204057512.0	217996138.0	283.9	110.2	804276887.0	1.0	0.9	0.9	179620428592.0
659_cVw-T1-TDNA-1_A23MHWWLT4_1.md	1576897808.0	14175.0	610911450.0	0.6	305448176.0	0.4	0.6	0.6	0.4	174.0	283.0	439.0	301761814.0	1.0	170404360.0	131357454.0	274170837.0	336726438.0	312.2	125.1	965986358.0	1.0	0.9	0.9	232333842578.0
659_cfy-T1-TDNA-1_A23MHWWLT4_1.md	1403539190.0	12045.0	617987665.0	0.6	308987428.0	0.5	0.5	0.6	0.4	155.0	242.0	369.0	306598912.0	1.0	174592409.0	132006503.0	294909373.0	323066247.0	268.2	103.4	785551525.0	1.0	0.9	0.9	204507932474.0
659_cuO-T1-TDNA-1_A23MHWWLT4_1.md	176289574.0	2203.0	59175620.0	0.7	29586559.0	0.5	0.5	0.6	0.4	117.0	184.0	278.0	29221804.0	1.0	17800139.0	11421665.0	32449157.0	26724260.0	203.0	77.6	117113954.0	1.0	0.9	0.9	24377819747.0
659_d0M-T1-TDNA-1_A23MHWWLT4_1.md	1236217452.0	10003.0	489075159.0	0.6	244532174.0	0.5	0.5	0.6	0.4	178.0	277.0	426.0	240956121.0	1.0	141588587.0	99367534.0	228137562.0	260927594.0	307.6	119.9	747142293.0	1.0	0.9	0.9	182720151414.0
659_dm4-T1-TDNA-1_A23MHWWLT4_1.md	1096629484.0	13225.0	433407238.0	0.6	216696773.0	0.6	0.4	0.6	0.4	106.0	152.0	218.0	214615370.0	1.0	124660811.0	89954559.0	238774441.0	194619572.0	165.8	54.7	663222246.0	1.0	1.0	1.0	145785669943.0
659_eKx-T1-TDNA-1_A23MHWWLT4_1.md	227242.0	1268.0	64616.0	0.7	31671.0	0.5	0.5	0.6	0.4	130.0	206.0	319.0	29752.0	0.9	18202.0	11550.0	32113.0	31235.0	230.8	91.6	162626.0	1.0	0.9	0.9	32118322.0
1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.md	525074166.0	9685.0	242580675.0	0.5	121285175.0	0.4	0.6	0.4	0.6	82.0	111.0	154.0	118427202.0	1.0	49340322.0	69086880.0	98121281.0	144449709.0	120.4	35.6	282493491.0	1.0	1.0	1.0	60545354240.0
1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.md	980339122.0	11505.0	439171060.0	0.6	219579493.0	0.5	0.5	0.6	0.4	115.0	170.0	255.0	215974394.0	1.0	126526466.0	89447928.0	236776505.0	202383050.0	189.8	68.8	541168062.0	1.0	0.9	0.9	134995127654.0
1029_FRC-T1-TDNA-1_A23MHWWLT4_1.md	1419885166.0	13228.0	496581566.0	0.7	248283728.0	0.5	0.5	0.6	0.4	145.0	241.0	383.0	243160562.0	1.0	143702255.0	99458307.0	242715134.0	253853204.0	271.0	113.1	923303600.0	1.0	0.9	0.9	205206534005.0
1029_FZX-T1-TDNA-1_A23MHWWLT4_1.md	1266149634.0	12186.0	520981319.0	0.6	260484080.0	0.5	0.5	0.6	0.4	166.0	283.0	446.0	254224451.0	1.0	149363235.0	104861216.0	242463857.0	278505276.0	312.3	130.2	745168315.0	1.0	0.9	0.9	185591717028.0
1029_HTI-T1-TDNA-1_A23MHWWLT4_1.md	1448569390.0	16383.0	595864436.0	0.6	297923632.0	0.5	0.5	0.6	0.4	136.0	211.0	324.0	292883861.0	1.0	169983560.0	122900301.0	300902279.0	294945774.0	235.9	90.7	852704954.0	1.0	0.9	0.9	207316963842.0
1029_I9B-T1-TDNA-1_A23MHWWLT4_1.md	1544443570.0	14779.0	568052946.0	0.6	284018591.0	0.5	0.5	0.6	0.4	155.0	259.0	408.0	278325127.0	1.0	164040239.0	114284888.0	272206131.0	295832036.0	288.7	119.6	976390624.0	1.0	0.9	0.9	224528050972.0
1029_IWL-T1-TDNA-1_A23MHWWLT4_1.md	697641300.0	10291.0	297285814.0	0.6	148637553.0	0.5	0.5	0.6	0.4	102.0	144.0	208.0	146857592.0	1.0	84081300.0	62776292.0	162011494.0	135264029.0	158.8	52.4	400355486.0	1.0	0.9	0.9	91026129218.0
1029_N5D-T1-TDNA-1_A23MHWWLT4_1.md	2048146770.0	20102.0	753355706.0	0.6	376667164.0	0.5	0.5	0.6	0.4	172.0	296.0	464.0	367451897.0	1.0	221224633.0	146227264.0	354543771.0	398791833.0	324.6	135.5	1294791064.0	1.0	0.9	0.9	299801627797.0
1029_T05-T1-TDNA-1_A23MHWWLT4_1.md	1538215770.0	14402.0	537285328.0	0.7	268634957.0	0.5	0.5	0.6	0.4	156.0	262.0	413.0	262507724.0	1.0	155968861.0	106538863.0	257574536.0	279696390.0	291.2	121.0	1000930442.0	1.0	0.9	0.9	223724945620.0
1047_JG-T1-TDNA-1_A23MHWWLT4_1.md	3083091320.0	38363.0	975304779.0	0.7	487632713.0	0.5	0.5	0.6	0.4	136.0	202.0	309.0	482811481.0	1.0	294034501.0	188776980.0	520543025.0	454723391.0	227.3	85.0	2107786541.0	1.0	0.9	0.9	440613719037.0
1136_00H-T1-TDNA-1_A23MHWWLT4_1.md	1357084376.0	12467.0	564335704.0	0.6	282161091.0	0.4	0.6	0.6	0.4	181.0	316.0	495.0	275961650.0	1.0	160808278.0	115153372.0	251376289.0	312946948.0	343.7	143.4	792748672.0	1.0	0.9	0.9	200256919585.0
1136_3LU-T1-TDNA-1_A23MHWWLT4_1.md	1428880482.0	13137.0	556512118.0	0.6	278248983.0	0.4	0.6	0.6	0.4	182.0	322.0	508.0	272672703.0	1.0	156414582.0	116258121.0	241818523.0	314680458.0	350.8	148.6	872368364.0	1.0	0.9	0.9	210529749834.0
1136_3MV-T1-TDNA-1_A23MHWWLT4_1.md	1247664000.0	14630.0	520471679.0	0.6	260228055.0	0.5	0.5	0.6	0.4	164.0	277.0	438.0	255381333.0	1.0	150733980.0	104647353.0	245507999.0	274949050.0	308.0	128.3	727192321.0	1.0	0.9	0.9	182964140627.0
1136_3U6-T1-TDNA-1_A23MHWWLT4_1.md	1931213300.0	20010.0	719269743.0	0.6	359624328.0	0.5	0.5	0.6	0.4	160.0	267.0	424.0	353339878.0	1.0	207233604.0	146106274.0	340174248.0	379075485.0	298.7	125.9	1211943557.0	1.0	0.9	0.9	282241843658.0
1136_3WJ-T1-TDNA-1_A23MHWWLT4_1.md	746414230.0	6731.0	337811345.0	0.5	168902050.0	0.5	0.5	0.6	0.4	128.0	199.0	308.0	165463416.0	1.0	96770145.0	68693271.0	173780613.0	164024001.0	223.9	87.7	408602885.0	1.0	0.9	0.9	105506096457.0
1136_4GR-T1-TDNA-1_A23MHWWLT4_1.md	1040220240.0	10242.0	479396723.0	0.5	239692918.0	0.5	0.5	0.6	0.4	137.0	218.0	345.0	235786995.0	1.0	138973767.0	96813228.0	242916751.0	236469730.0	247.7	100.9	560823517.0	1.0	0.9	0.9	149105254405.0
1136_4XR-T1-TDNA-1_A23MHWWLT4_1.md	1198380686.0	10644.0	526903639.0	0.6	263446115.0	0.5	0.5	0.6	0.4	162.0	266.0	410.0	259883109.0	1.0	149656071.0	110227038.0	247788348.0	279104647.0	292.9	116.9	671477047.0	1.0	0.9	0.9	175536769179.0
1136_4Z5-T1-TDNA-1_A23MHWWLT4_1.md	1513892006.0	19666.0	489402082.0	0.7	244690891.0	0.5	0.5	0.6	0.4	113.0	168.0	257.0	240081788.0	1.0	133760331.0	106321457.0	248510911.0	240871505.0	190.2	71.6	1024489924.0	1.0	0.9	0.9	208518040149.0
1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.md	809484368.0	8646.0	416233569.0	0.5	208112211.0	0.5	0.5	0.6	0.4	130.0	203.0	312.0	205389449.0	1.0	117603453.0	87785996.0	209950942.0	206273981.0	227.2	88.2	393250799.0	1.0	0.9	0.9	114870693862.0
1136_5KC-T1-TDNA-1_A23MHWWLT4_1.md	980697938.0	8025.0	502742878.0	0.5	251367062.0	0.5	0.5	0.6	0.4	152.0	254.0	397.0	248792028.0	1.0	142590776.0	106201252.0	239152076.0	263582777.0	281.5	115.5	477955060.0	1.0	0.9	0.9	142446157414.0
1136_5L2-T1-TDNA-1_A23MHWWLT4_1.md	998315166.0	8999.0	471656702.0	0.5	235823459.0	0.5	0.5	0.6	0.4	165.0	279.0	436.0	233085278.0	1.0	131009015.0	102076263.0	212395418.0	259252285.0	307.2	126.4	526658464.0	1.0	0.9	0.9	146277740745.0
1136_5Q-T1-TDNA-1_A23MHWWLT4_1.md	1203678152.0	493022.0	539332623.0	0.6	269419074.0	0.5	0.5	0.6	0.4	164.0	272.0	420.0	265467673.0	1.0	152982449.0	112485224.0	251671787.0	287167814.0	299.0	120.0	664345529.0	1.0	0.9	0.9	176312354948.0
1136_5TB-T1-TDNA-1_A23MHWWLT4_1.md	1823089358.0	19133.0	663741800.0	0.6	331860944.0	0.5	0.5	0.6	0.4	142.0	226.0	349.0	327020011.0	1.0	194019698.0	133000313.0	336859056.0	326863611.0	252.0	99.6	1159347558.0	1.0	0.9	0.9	261776636390.0
1136_6G2-T1-TDNA-1_A23MHWWLT4_1.md	1081074494.0	10323.0	498930824.0	0.5	249459929.0	0.5	0.5	0.6	0.4	139.0	224.0	353.0	245634966.0	1.0	149189237.0	96445729.0	259687820.0	239232681.0	252.7	103.1	582143670.0	1.0	0.9	0.9	154930705871.0
1136_6TL-T1-TDNA-1_A23MHWWLT4_1.md	896285704.0	7758.0	403169800.0	0.6	201580757.0	0.5	0.5	0.6	0.4	133.0	213.0	336.0	199039409.0	1.0	110986686.0	88052723.0	193844720.0	209317322.0	240.6	97.9	493115904.0	1.0	0.9	0.9	127819297640.0
1136_7GC-T1-TDNA-1_A23MHWWLT4_1.md	1525524812.0	16430.0	583796096.0	0.6	291889483.0	0.5	0.5	0.6	0.4	132.0	209.0	321.0	287762562.0	1.0	168757857.0	119004705.0	300068398.0	283711268.0	232.7	90.7	941728716.0	1.0	0.9	0.9	216356305435.0
1136_7OW-T1-TDNA-1_A23MHWWLT4_1.md	1292740676.0	11895.0	550934406.0	0.6	275460855.0	0.5	0.5	0.6	0.4	161.0	268.0	419.0	271263035.0	1.0	157194594.0	114068441.0	258621934.0	292300577.0	296.8	121.5	741806270.0	1.0	0.9	0.9	188792883561.0
1136_8DV-T1-TDNA-1_A23MHWWLT4_1.md	902492764.0	9531.0	384818695.0	0.6	192404276.0	0.5	0.5	0.6	0.4	118.0	180.0	290.0	189554688.0	1.0	115402068.0	74152620.0	210869807.0	173939357.0	210.9	87.3	517674069.0	1.0	0.9	0.9	125146025075.0
1136_27F-T1-TDNA-1_A23MHWWLT4_1.md	2051161300.0	24095.0	740879491.0	0.6	370427287.0	0.5	0.5	0.6	0.4	139.0	220.0	341.0	364575574.0	1.0	213556613.0	151018961.0	373256377.0	367599019.0	246.5	98.0	1310281809.0	1.0	0.9	0.9	293685423514.0
1136_76X-T1-TDNA-1_A23MHWWLT4_1.md	1081414144.0	10101.0	530451435.0	0.5	265220316.0	0.5	0.5	0.6	0.4	135.0	215.0	330.0	260968417.0	1.0	150491537.0	110476880.0	266003103.0	264438231.0	238.9	93.4	550962709.0	1.0	0.9	0.9	154240364314.0
1136_81F-T1-TDNA-1_A23MHWWLT4_1.md	1170861098.0	14485.0	511916090.0	0.6	255950517.0	0.5	0.5	0.6	0.4	102.0	144.0	207.0	251154490.0	1.0	139653065.0	111501425.0	270569487.0	241332118.0	157.9	51.7	658945008.0	1.0	0.9	0.9	151732043577.0
1136_85O-T1-TDNA-1_A23MHWWLT4_1.md	860977808.0	10042.0	385341887.0	0.6	192665595.0	0.5	0.5	0.6	0.4	133.0	217.0	343.0	189090783.0	1.0	110921125.0	78169658.0	193606769.0	191725076.0	245.0	101.4	475635921.0	1.0	0.9	0.9	122641549988.0
1136_86S-T1-TDNA-1_A23MHWWLT4_1.md	1415215252.0	13868.0	549776105.0	0.6	274880777.0	0.5	0.5	0.6	0.4	137.0	218.0	340.0	271513271.0	1.0	157604981.0	113908290.0	274852565.0	274909672.0	244.5	97.6	865439147.0	1.0	0.9	0.9	202273421300.0
1136_87O-T1-TDNA-1_A23MHWWLT4_1.md	1289899336.0	13338.0	567249384.0	0.6	283617652.0	0.5	0.5	0.6	0.4	141.0	230.0	364.0	280543946.0	1.0	166707494.0	113836452.0	287531801.0	279704245.0	259.6	107.3	722649952.0	1.0	0.9	0.9	185760910018.0
1136_253-T1-TDNA-1_A23MHWWLT4_1.md	1291015638.0	10971.0	517975318.0	0.6	258981722.0	0.5	0.5	0.6	0.4	165.0	276.0	433.0	252890964.0	1.0	150196766.0	102694198.0	245420706.0	272543641.0	305.4	125.6	773040320.0	1.0	0.9	0.9	188639083725.0
FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1.md	1256062814.0	13001.0	583069765.0	0.5	291527927.0	0.4	0.6	0.6	0.4	197.0	333.0	507.0	286980924.0	1.0	165947627.0	121033297.0	258558603.0	324498161.0	357.4	141.4	672993049.0	1.0	0.9	0.9	185904350293.0
NTC_0002_0015_A23MHWWLT4_1.md	41412.0	22.0	2698.0	0.9	1338.0	0.1	0.9	0.5	0.5	119.0	194.0	307.0	322.0	0.2	169.0	153.0	304.0	2372.0	218.6	92.6	38714.0	0.9	0.6	0.6	6230752.0

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: seqtool_depth_stats_xgen_exome_hyb_panel_v2_targets_hg38_minus_altera_v3_targets_postQC_hg38_bed_table

Sort	Column	Description	ID
\|\|	reads	reads	`seqtool-reads`
\|\|	unmapped	unmapped	`seqtool-unmapped`
\|\|	frac_unmapped	frac_unmapped	`seqtool-frac_unmapped`
\|\|	unique_reads	unique_reads	`seqtool-unique_reads`
\|\|	frac_dupes	frac_dupes	`seqtool-frac_dupes`
\|\|	pairs	pairs	`seqtool-pairs`
\|\|	frac_reads_on_target	frac_reads_on_target	`seqtool-frac_reads_on_target`
\|\|	frac_reads_off_target	frac_reads_off_target	`seqtool-frac_reads_off_target`
\|\|	frac_pairs_on_target	frac_pairs_on_target	`seqtool-frac_pairs_on_target`
\|\|	frac_pairs_off_target	frac_pairs_off_target	`seqtool-frac_pairs_off_target`
\|\|	frag_size_q20	frag_size_q20	`seqtool-frag_size_q20`
\|\|	frag_size_median	frag_size_median	`seqtool-frag_size_median`
\|\|	frag_size_q80	frag_size_q80	`seqtool-frag_size_q80`
\|\|	proper_pairs	proper_pairs	`seqtool-proper_pairs`
\|\|	frac_proper_pairs	frac_proper_pairs	`seqtool-frac_proper_pairs`
\|\|	pairs_on_target	pairs_on_target	`seqtool-pairs_on_target`
\|\|	pairs_off_target	pairs_off_target	`seqtool-pairs_off_target`
\|\|	reads_on_target	reads_on_target	`seqtool-reads_on_target`
\|\|	reads_off_target	reads_off_target	`seqtool-reads_off_target`
\|\|	frag_size_mean	frag_size_mean	`seqtool-frag_size_mean`
\|\|	frag_size_std	frag_size_std	`seqtool-frag_size_std`
\|\|	dupes	dupes	`seqtool-dupes`
\|\|	n_q20	n_q20	`seqtool-n_q20`
\|\|	n_q25	n_q25	`seqtool-n_q25`
\|\|	n_q30	n_q30	`seqtool-n_q30`
\|\|	n_bases	n_bases	`seqtool-n_bases`

Depth Stats - hotspot_depth

Depth and read QC statistics for hotspot_depth panel.

Showing ⁴⁸/₄₈ rows and ²⁶/₂₆ columns.

Sample Name	reads	unmapped	unique_reads	frac_dupes	pairs	frac_reads_off_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases
659_Kh-T1-TDNA-1_A23MHWWLT4_1.md	1148633740.0	10778.0	495613609.0	0.6	247800950.0	1.0	1.0	212.0	330.0	504.0	243471242.0	1.0	241231.0	243230011.0	212516.0	495390315.0	360.5	136.9	653020131.0	1.0	0.9	0.9	171109105582.0
659_Lx-T1-TDNA-1_A23MHWWLT4_1.md	519456.0	1575.0	150826.0	0.7	74624.0	1.0	1.0	114.0	168.0	254.0	71706.0	1.0	16.0	71690.0	24.0	149227.0	188.7	69.1	368630.0	1.0	0.9	0.9	71291258.0
659_bR4-T1-TDNA-1_A23MHWWLT4_1.md	1626177526.0	12090.0	538501316.0	0.7	269244142.0	1.0	1.0	186.0	300.0	452.0	265227300.0	1.0	207761.0	265019539.0	196397.0	538292829.0	325.6	125.4	1087676210.0	1.0	0.9	0.9	240562768521.0
659_bgw-T1-TDNA-1_A23MHWWLT4_1.md	1291405768.0	10495.0	459515071.0	0.6	229751975.0	1.0	1.0	147.0	229.0	353.0	227261313.0	1.0	123220.0	227138093.0	142015.0	459362561.0	256.2	100.5	831890697.0	1.0	0.9	0.9	186979004009.0
659_cAd-T1-TDNA-1_A23MHWWLT4_1.md	1226343906.0	13369.0	422067019.0	0.7	211026495.0	1.0	1.0	160.0	261.0	393.0	208942262.0	1.0	122049.0	208820213.0	129507.0	421924143.0	283.9	110.2	804276887.0	1.0	0.9	0.9	179620428592.0
659_cVw-T1-TDNA-1_A23MHWWLT4_1.md	1576897808.0	14175.0	610911450.0	0.6	305448176.0	1.0	1.0	174.0	283.0	439.0	301761814.0	1.0	275689.0	301486125.0	273657.0	610623618.0	312.2	125.1	965986358.0	1.0	0.9	0.9	232333842578.0
659_cfy-T1-TDNA-1_A23MHWWLT4_1.md	1403539190.0	12045.0	617987665.0	0.6	308987428.0	1.0	1.0	155.0	242.0	369.0	306598912.0	1.0	239728.0	306359184.0	268535.0	617707085.0	268.2	103.4	785551525.0	1.0	0.9	0.9	204507932474.0
659_cuO-T1-TDNA-1_A23MHWWLT4_1.md	176289574.0	2203.0	59175620.0	0.7	29586559.0	1.0	1.0	117.0	184.0	278.0	29221804.0	1.0	8675.0	29213129.0	12446.0	59160971.0	203.0	77.6	117113954.0	1.0	0.9	0.9	24377819747.0
659_d0M-T1-TDNA-1_A23MHWWLT4_1.md	1236217452.0	10003.0	489075159.0	0.6	244532174.0	1.0	1.0	178.0	277.0	426.0	240956121.0	1.0	182376.0	240773745.0	182610.0	488882546.0	307.6	119.9	747142293.0	1.0	0.9	0.9	182720151414.0
659_dm4-T1-TDNA-1_A23MHWWLT4_1.md	1096629484.0	13225.0	433407238.0	0.6	216696773.0	1.0	1.0	106.0	152.0	218.0	214615370.0	1.0	70888.0	214544482.0	115375.0	433278638.0	165.8	54.7	663222246.0	1.0	1.0	1.0	145785669943.0
659_eKx-T1-TDNA-1_A23MHWWLT4_1.md	227242.0	1268.0	64616.0	0.7	31671.0	1.0	1.0	130.0	206.0	319.0	29752.0	0.9	9.0	29743.0	13.0	63335.0	230.8	91.6	162626.0	1.0	0.9	0.9	32118322.0
1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.md	525074166.0	9685.0	242580675.0	0.5	121285175.0	1.0	1.0	82.0	111.0	154.0	118427202.0	1.0	15054.0	118412148.0	28720.0	242542270.0	120.4	35.6	282493491.0	1.0	1.0	1.0	60545354240.0
1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.md	980339122.0	11505.0	439171060.0	0.6	219579493.0	1.0	1.0	115.0	170.0	255.0	215974394.0	1.0	85342.0	215889052.0	126989.0	439032566.0	189.8	68.8	541168062.0	1.0	0.9	0.9	134995127654.0
1029_FRC-T1-TDNA-1_A23MHWWLT4_1.md	1419885166.0	13228.0	496581566.0	0.7	248283728.0	1.0	1.0	145.0	241.0	383.0	243160562.0	1.0	130406.0	243030156.0	142905.0	496425433.0	271.0	113.1	923303600.0	1.0	0.9	0.9	205206534005.0
1029_FZX-T1-TDNA-1_A23MHWWLT4_1.md	1266149634.0	12186.0	520981319.0	0.6	260484080.0	1.0	1.0	166.0	283.0	446.0	254224451.0	1.0	180837.0	254043614.0	177066.0	520792067.0	312.3	130.2	745168315.0	1.0	0.9	0.9	185591717028.0
1029_HTI-T1-TDNA-1_A23MHWWLT4_1.md	1448569390.0	16383.0	595864436.0	0.6	297923632.0	1.0	1.0	136.0	211.0	324.0	292883861.0	1.0	157034.0	292726827.0	196838.0	595651215.0	235.9	90.7	852704954.0	1.0	0.9	0.9	207316963842.0
1029_I9B-T1-TDNA-1_A23MHWWLT4_1.md	1544443570.0	14779.0	568052946.0	0.6	284018591.0	1.0	1.0	155.0	259.0	408.0	278325127.0	1.0	174643.0	278150484.0	181694.0	567856473.0	288.7	119.6	976390624.0	1.0	0.9	0.9	224528050972.0
1029_IWL-T1-TDNA-1_A23MHWWLT4_1.md	697641300.0	10291.0	297285814.0	0.6	148637553.0	1.0	1.0	102.0	144.0	208.0	146857592.0	1.0	36819.0	146820773.0	61522.0	297214001.0	158.8	52.4	400355486.0	1.0	0.9	0.9	91026129218.0
1029_N5D-T1-TDNA-1_A23MHWWLT4_1.md	2048146770.0	20102.0	753355706.0	0.6	376667164.0	1.0	1.0	172.0	296.0	464.0	367451897.0	1.0	223861.0	367228036.0	212034.0	753123570.0	324.6	135.5	1294791064.0	1.0	0.9	0.9	299801627797.0
1029_T05-T1-TDNA-1_A23MHWWLT4_1.md	1538215770.0	14402.0	537285328.0	0.7	268634957.0	1.0	1.0	156.0	262.0	413.0	262507724.0	1.0	146411.0	262361313.0	152122.0	537118804.0	291.2	121.0	1000930442.0	1.0	0.9	0.9	223724945620.0
1047_JG-T1-TDNA-1_A23MHWWLT4_1.md	3083091320.0	38363.0	975304779.0	0.7	487632713.0	1.0	1.0	136.0	202.0	309.0	482811481.0	1.0	188649.0	482622832.0	241034.0	975025382.0	227.3	85.0	2107786541.0	1.0	0.9	0.9	440613719037.0
1136_00H-T1-TDNA-1_A23MHWWLT4_1.md	1357084376.0	12467.0	564335704.0	0.6	282161091.0	1.0	1.0	181.0	316.0	495.0	275961650.0	1.0	254928.0	275706722.0	227731.0	564095506.0	343.7	143.4	792748672.0	1.0	0.9	0.9	200256919585.0
1136_3LU-T1-TDNA-1_A23MHWWLT4_1.md	1428880482.0	13137.0	556512118.0	0.6	278248983.0	1.0	1.0	182.0	322.0	508.0	272672703.0	1.0	260039.0	272412664.0	228406.0	556270575.0	350.8	148.6	872368364.0	1.0	0.9	0.9	210529749834.0
1136_3MV-T1-TDNA-1_A23MHWWLT4_1.md	1247664000.0	14630.0	520471679.0	0.6	260228055.0	1.0	1.0	164.0	277.0	438.0	255381333.0	1.0	194112.0	255187221.0	191997.0	520265052.0	308.0	128.3	727192321.0	1.0	0.9	0.9	182964140627.0
1136_3U6-T1-TDNA-1_A23MHWWLT4_1.md	1931213300.0	20010.0	719269743.0	0.6	359624328.0	1.0	1.0	160.0	267.0	424.0	353339878.0	1.0	275125.0	353064753.0	277650.0	718972083.0	298.7	125.9	1211943557.0	1.0	0.9	0.9	282241843658.0
1136_3WJ-T1-TDNA-1_A23MHWWLT4_1.md	746414230.0	6731.0	337811345.0	0.5	168902050.0	1.0	1.0	128.0	199.0	308.0	165463416.0	1.0	71241.0	165392175.0	93315.0	337711299.0	223.9	87.7	408602885.0	1.0	0.9	0.9	105506096457.0
1136_4GR-T1-TDNA-1_A23MHWWLT4_1.md	1040220240.0	10242.0	479396723.0	0.5	239692918.0	1.0	1.0	137.0	218.0	345.0	235786995.0	1.0	138164.0	235648831.0	165099.0	479221382.0	247.7	100.9	560823517.0	1.0	0.9	0.9	149105254405.0
1136_4XR-T1-TDNA-1_A23MHWWLT4_1.md	1198380686.0	10644.0	526903639.0	0.6	263446115.0	1.0	1.0	162.0	266.0	410.0	259883109.0	1.0	209607.0	259673502.0	218794.0	526674201.0	292.9	116.9	671477047.0	1.0	0.9	0.9	175536769179.0
1136_4Z5-T1-TDNA-1_A23MHWWLT4_1.md	1513892006.0	19666.0	489402082.0	0.7	244690891.0	1.0	1.0	113.0	168.0	257.0	240081788.0	1.0	377232.0	239704556.0	538543.0	488843873.0	190.2	71.6	1024489924.0	1.0	0.9	0.9	208518040149.0
1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.md	809484368.0	8646.0	416233569.0	0.5	208112211.0	1.0	1.0	130.0	203.0	312.0	205389449.0	1.0	137601.0	205251848.0	177566.0	416047357.0	227.2	88.2	393250799.0	1.0	0.9	0.9	114870693862.0
1136_5KC-T1-TDNA-1_A23MHWWLT4_1.md	980697938.0	8025.0	502742878.0	0.5	251367062.0	1.0	1.0	152.0	254.0	397.0	248792028.0	1.0	202495.0	248589533.0	216946.0	502517907.0	281.5	115.5	477955060.0	1.0	0.9	0.9	142446157414.0
1136_5L2-T1-TDNA-1_A23MHWWLT4_1.md	998315166.0	8999.0	471656702.0	0.5	235823459.0	1.0	1.0	165.0	279.0	436.0	233085278.0	1.0	212362.0	232872916.0	212735.0	471434968.0	307.2	126.4	526658464.0	1.0	0.9	0.9	146277740745.0
1136_5Q-T1-TDNA-1_A23MHWWLT4_1.md	1203678152.0	493022.0	539332623.0	0.6	269419074.0	1.0	1.0	164.0	272.0	420.0	265467673.0	1.0	213327.0	265254346.0	218549.0	538621052.0	299.0	120.0	664345529.0	1.0	0.9	0.9	176312354948.0
1136_5TB-T1-TDNA-1_A23MHWWLT4_1.md	1823089358.0	19133.0	663741800.0	0.6	331860944.0	1.0	1.0	142.0	226.0	349.0	327020011.0	1.0	181112.0	326838899.0	214541.0	663508126.0	252.0	99.6	1159347558.0	1.0	0.9	0.9	261776636390.0
1136_6G2-T1-TDNA-1_A23MHWWLT4_1.md	1081074494.0	10323.0	498930824.0	0.5	249459929.0	1.0	1.0	139.0	224.0	353.0	245634966.0	1.0	143457.0	245491509.0	167698.0	498752803.0	252.7	103.1	582143670.0	1.0	0.9	0.9	154930705871.0
1136_6TL-T1-TDNA-1_A23MHWWLT4_1.md	896285704.0	7758.0	403169800.0	0.6	201580757.0	1.0	1.0	133.0	213.0	336.0	199039409.0	1.0	121971.0	198917438.0	147286.0	403014756.0	240.6	97.9	493115904.0	1.0	0.9	0.9	127819297640.0
1136_7GC-T1-TDNA-1_A23MHWWLT4_1.md	1525524812.0	16430.0	583796096.0	0.6	291889483.0	1.0	1.0	132.0	209.0	321.0	287762562.0	1.0	146737.0	287615825.0	186734.0	583592932.0	232.7	90.7	941728716.0	1.0	0.9	0.9	216356305435.0
1136_7OW-T1-TDNA-1_A23MHWWLT4_1.md	1292740676.0	11895.0	550934406.0	0.6	275460855.0	1.0	1.0	161.0	268.0	419.0	271263035.0	1.0	214523.0	271048512.0	219807.0	550702704.0	296.8	121.5	741806270.0	1.0	0.9	0.9	188792883561.0
1136_8DV-T1-TDNA-1_A23MHWWLT4_1.md	902492764.0	9531.0	384818695.0	0.6	192404276.0	1.0	1.0	118.0	180.0	290.0	189554688.0	1.0	66164.0	189488524.0	90337.0	384718827.0	210.9	87.3	517674069.0	1.0	0.9	0.9	125146025075.0
1136_27F-T1-TDNA-1_A23MHWWLT4_1.md	2051161300.0	24095.0	740879491.0	0.6	370427287.0	1.0	1.0	139.0	220.0	341.0	364575574.0	1.0	600201.0	363975373.0	726789.0	740128607.0	246.5	98.0	1310281809.0	1.0	0.9	0.9	293685423514.0
1136_76X-T1-TDNA-1_A23MHWWLT4_1.md	1081414144.0	10101.0	530451435.0	0.5	265220316.0	1.0	1.0	135.0	215.0	330.0	260968417.0	1.0	148903.0	260819514.0	184640.0	530256694.0	238.9	93.4	550962709.0	1.0	0.9	0.9	154240364314.0
1136_81F-T1-TDNA-1_A23MHWWLT4_1.md	1170861098.0	14485.0	511916090.0	0.6	255950517.0	1.0	1.0	102.0	144.0	207.0	251154490.0	1.0	59101.0	251095389.0	99804.0	511801801.0	157.9	51.7	658945008.0	1.0	0.9	0.9	151732043577.0
1136_85O-T1-TDNA-1_A23MHWWLT4_1.md	860977808.0	10042.0	385341887.0	0.6	192665595.0	1.0	1.0	133.0	217.0	343.0	189090783.0	1.0	105548.0	188985235.0	125853.0	385205992.0	245.0	101.4	475635921.0	1.0	0.9	0.9	122641549988.0
1136_86S-T1-TDNA-1_A23MHWWLT4_1.md	1415215252.0	13868.0	549776105.0	0.6	274880777.0	1.0	1.0	137.0	218.0	340.0	271513271.0	1.0	162359.0	271350912.0	195530.0	549566707.0	244.5	97.6	865439147.0	1.0	0.9	0.9	202273421300.0
1136_87O-T1-TDNA-1_A23MHWWLT4_1.md	1289899336.0	13338.0	567249384.0	0.6	283617652.0	1.0	1.0	141.0	230.0	364.0	280543946.0	1.0	181148.0	280362798.0	205503.0	567030543.0	259.6	107.3	722649952.0	1.0	0.9	0.9	185760910018.0
1136_253-T1-TDNA-1_A23MHWWLT4_1.md	1291015638.0	10971.0	517975318.0	0.6	258981722.0	1.0	1.0	165.0	276.0	433.0	252890964.0	1.0	168616.0	252722348.0	168601.0	517795746.0	305.4	125.6	773040320.0	1.0	0.9	0.9	188639083725.0
FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1.md	1256062814.0	13001.0	583069765.0	0.5	291527927.0	1.0	1.0	197.0	333.0	507.0	286980924.0	1.0	326129.0	286654795.0	292503.0	582764261.0	357.4	141.4	672993049.0	1.0	0.9	0.9	185904350293.0
NTC_0002_0015_A23MHWWLT4_1.md	41412.0	22.0	2698.0	0.9	1338.0	1.0	1.0	119.0	194.0	307.0	322.0	0.2	0.0	322.0	0.0	2676.0	218.6	92.6	38714.0	0.9	0.6	0.6	6230752.0

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: seqtool_depth_stats_FINAL_hotspot_list_07302025_hg38_sorted_bed_table

Sort	Column	Description	ID
\|\|	reads	reads	`seqtool-reads`
\|\|	unmapped	unmapped	`seqtool-unmapped`
\|\|	frac_unmapped	frac_unmapped	`seqtool-frac_unmapped`
\|\|	unique_reads	unique_reads	`seqtool-unique_reads`
\|\|	frac_dupes	frac_dupes	`seqtool-frac_dupes`
\|\|	pairs	pairs	`seqtool-pairs`
\|\|	frac_reads_on_target	frac_reads_on_target	`seqtool-frac_reads_on_target`
\|\|	frac_reads_off_target	frac_reads_off_target	`seqtool-frac_reads_off_target`
\|\|	frac_pairs_on_target	frac_pairs_on_target	`seqtool-frac_pairs_on_target`
\|\|	frac_pairs_off_target	frac_pairs_off_target	`seqtool-frac_pairs_off_target`
\|\|	frag_size_q20	frag_size_q20	`seqtool-frag_size_q20`
\|\|	frag_size_median	frag_size_median	`seqtool-frag_size_median`
\|\|	frag_size_q80	frag_size_q80	`seqtool-frag_size_q80`
\|\|	proper_pairs	proper_pairs	`seqtool-proper_pairs`
\|\|	frac_proper_pairs	frac_proper_pairs	`seqtool-frac_proper_pairs`
\|\|	pairs_on_target	pairs_on_target	`seqtool-pairs_on_target`
\|\|	pairs_off_target	pairs_off_target	`seqtool-pairs_off_target`
\|\|	reads_on_target	reads_on_target	`seqtool-reads_on_target`
\|\|	reads_off_target	reads_off_target	`seqtool-reads_off_target`
\|\|	frag_size_mean	frag_size_mean	`seqtool-frag_size_mean`
\|\|	frag_size_std	frag_size_std	`seqtool-frag_size_std`
\|\|	dupes	dupes	`seqtool-dupes`
\|\|	n_q20	n_q20	`seqtool-n_q20`
\|\|	n_q25	n_q25	`seqtool-n_q25`
\|\|	n_q30	n_q30	`seqtool-n_q30`
\|\|	n_bases	n_bases	`seqtool-n_bases`

Depth Stats - foresight_depth

Depth and read QC statistics for foresight_depth panel.

Showing ⁴⁸/₄₈ rows and ²⁶/₂₆ columns.

Sample Name	reads	unmapped	unique_reads	frac_dupes	pairs	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases
659_Kh-T1-TDNA-1_A23MHWWLT4_1.md	1148633740.0	10778.0	495613609.0	0.6	247800950.0	1.0	0.0	1.0	212.0	330.0	504.0	243471242.0	1.0	10958197.0	232513045.0	18785398.0	476817433.0	360.5	136.9	653020131.0	1.0	0.9	0.9	171109105582.0
659_Lx-T1-TDNA-1_A23MHWWLT4_1.md	519456.0	1575.0	150826.0	0.7	74624.0	1.0	0.0	1.0	114.0	168.0	254.0	71706.0	1.0	1436.0	70270.0	2804.0	146447.0	188.7	69.1	368630.0	1.0	0.9	0.9	71291258.0
659_bR4-T1-TDNA-1_A23MHWWLT4_1.md	1626177526.0	12090.0	538501316.0	0.7	269244142.0	1.0	0.0	1.0	186.0	300.0	452.0	265227300.0	1.0	9826848.0	255400452.0	16985520.0	521503706.0	325.6	125.4	1087676210.0	1.0	0.9	0.9	240562768521.0
659_bgw-T1-TDNA-1_A23MHWWLT4_1.md	1291405768.0	10495.0	459515071.0	0.6	229751975.0	1.0	0.0	1.0	147.0	229.0	353.0	227261313.0	1.0	6625159.0	220636154.0	12057647.0	447446929.0	256.2	100.5	831890697.0	1.0	0.9	0.9	186979004009.0
659_cAd-T1-TDNA-1_A23MHWWLT4_1.md	1226343906.0	13369.0	422067019.0	0.7	211026495.0	1.0	0.0	1.0	160.0	261.0	393.0	208942262.0	1.0	6197534.0	202744728.0	10931092.0	411122558.0	283.9	110.2	804276887.0	1.0	0.9	0.9	179620428592.0
659_cVw-T1-TDNA-1_A23MHWWLT4_1.md	1576897808.0	14175.0	610911450.0	0.6	305448176.0	1.0	0.0	1.0	174.0	283.0	439.0	301761814.0	1.0	11779932.0	289981882.0	20641949.0	590255326.0	312.2	125.1	965986358.0	1.0	0.9	0.9	232333842578.0
659_cfy-T1-TDNA-1_A23MHWWLT4_1.md	1403539190.0	12045.0	617987665.0	0.6	308987428.0	1.0	0.0	1.0	155.0	242.0	369.0	306598912.0	1.0	11673631.0	294925281.0	21178774.0	596796846.0	268.2	103.4	785551525.0	1.0	0.9	0.9	204507932474.0
659_cuO-T1-TDNA-1_A23MHWWLT4_1.md	176289574.0	2203.0	59175620.0	0.7	29586559.0	1.0	0.0	1.0	117.0	184.0	278.0	29221804.0	1.0	619265.0	28602539.0	1177334.0	57996083.0	203.0	77.6	117113954.0	1.0	0.9	0.9	24377819747.0
659_d0M-T1-TDNA-1_A23MHWWLT4_1.md	1236217452.0	10003.0	489075159.0	0.6	244532174.0	1.0	0.0	1.0	178.0	277.0	426.0	240956121.0	1.0	9396047.0	231560074.0	16465108.0	472600048.0	307.6	119.9	747142293.0	1.0	0.9	0.9	182720151414.0
659_dm4-T1-TDNA-1_A23MHWWLT4_1.md	1096629484.0	13225.0	433407238.0	0.6	216696773.0	1.0	0.0	1.0	106.0	152.0	218.0	214615370.0	1.0	5337137.0	209278233.0	10457986.0	422936027.0	165.8	54.7	663222246.0	1.0	1.0	1.0	145785669943.0
659_eKx-T1-TDNA-1_A23MHWWLT4_1.md	227242.0	1268.0	64616.0	0.7	31671.0	1.0	0.0	1.0	130.0	206.0	319.0	29752.0	0.9	665.0	29087.0	1237.0	62111.0	230.8	91.6	162626.0	1.0	0.9	0.9	32118322.0
1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.md	525074166.0	9685.0	242580675.0	0.5	121285175.0	1.0	0.0	1.0	82.0	111.0	154.0	118427202.0	1.0	2295935.0	116131267.0	4610266.0	237960724.0	120.4	35.6	282493491.0	1.0	1.0	1.0	60545354240.0
1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.md	980339122.0	11505.0	439171060.0	0.6	219579493.0	1.0	0.0	1.0	115.0	170.0	255.0	215974394.0	1.0	6530157.0	209444237.0	12614810.0	426544745.0	189.8	68.8	541168062.0	1.0	0.9	0.9	134995127654.0
1029_FRC-T1-TDNA-1_A23MHWWLT4_1.md	1419885166.0	13228.0	496581566.0	0.7	248283728.0	1.0	0.0	1.0	145.0	241.0	383.0	243160562.0	1.0	7898723.0	235261839.0	14215623.0	482352715.0	271.0	113.1	923303600.0	1.0	0.9	0.9	205206534005.0
1029_FZX-T1-TDNA-1_A23MHWWLT4_1.md	1266149634.0	12186.0	520981319.0	0.6	260484080.0	1.0	0.0	1.0	166.0	283.0	446.0	254224451.0	1.0	10216031.0	244008420.0	18003457.0	502965676.0	312.3	130.2	745168315.0	1.0	0.9	0.9	185591717028.0
1029_HTI-T1-TDNA-1_A23MHWWLT4_1.md	1448569390.0	16383.0	595864436.0	0.6	297923632.0	1.0	0.0	1.0	136.0	211.0	324.0	292883861.0	1.0	9793793.0	283090068.0	18273581.0	577574472.0	235.9	90.7	852704954.0	1.0	0.9	0.9	207316963842.0
1029_I9B-T1-TDNA-1_A23MHWWLT4_1.md	1544443570.0	14779.0	568052946.0	0.6	284018591.0	1.0	0.0	1.0	155.0	259.0	408.0	278325127.0	1.0	9799509.0	268525618.0	17401472.0	550636695.0	288.7	119.6	976390624.0	1.0	0.9	0.9	224528050972.0
1029_IWL-T1-TDNA-1_A23MHWWLT4_1.md	697641300.0	10291.0	297285814.0	0.6	148637553.0	1.0	0.0	1.0	102.0	144.0	208.0	146857592.0	1.0	3400600.0	143456992.0	6689849.0	290585674.0	158.8	52.4	400355486.0	1.0	0.9	0.9	91026129218.0
1029_N5D-T1-TDNA-1_A23MHWWLT4_1.md	2048146770.0	20102.0	753355706.0	0.6	376667164.0	1.0	0.0	1.0	172.0	296.0	464.0	367451897.0	1.0	13127089.0	354324808.0	22623643.0	730711961.0	324.6	135.5	1294791064.0	1.0	0.9	0.9	299801627797.0
1029_T05-T1-TDNA-1_A23MHWWLT4_1.md	1538215770.0	14402.0	537285328.0	0.7	268634957.0	1.0	0.0	1.0	156.0	262.0	413.0	262507724.0	1.0	8763216.0	253744508.0	15534052.0	521736874.0	291.2	121.0	1000930442.0	1.0	0.9	0.9	223724945620.0
1047_JG-T1-TDNA-1_A23MHWWLT4_1.md	3083091320.0	38363.0	975304779.0	0.7	487632713.0	1.0	0.0	1.0	136.0	202.0	309.0	482811481.0	1.0	12751885.0	470059596.0	23715950.0	951550466.0	227.3	85.0	2107786541.0	1.0	0.9	0.9	440613719037.0
1136_00H-T1-TDNA-1_A23MHWWLT4_1.md	1357084376.0	12467.0	564335704.0	0.6	282161091.0	1.0	0.0	1.0	181.0	316.0	495.0	275961650.0	1.0	12226487.0	263735163.0	21030753.0	543292484.0	343.7	143.4	792748672.0	1.0	0.9	0.9	200256919585.0
1136_3LU-T1-TDNA-1_A23MHWWLT4_1.md	1428880482.0	13137.0	556512118.0	0.6	278248983.0	1.0	0.0	1.0	182.0	322.0	508.0	272672703.0	1.0	11659875.0	261012828.0	19887940.0	536611041.0	350.8	148.6	872368364.0	1.0	0.9	0.9	210529749834.0
1136_3MV-T1-TDNA-1_A23MHWWLT4_1.md	1247664000.0	14630.0	520471679.0	0.6	260228055.0	1.0	0.1	0.9	164.0	277.0	438.0	255381333.0	1.0	12785891.0	242595442.0	23011325.0	497445724.0	308.0	128.3	727192321.0	1.0	0.9	0.9	182964140627.0
1136_3U6-T1-TDNA-1_A23MHWWLT4_1.md	1931213300.0	20010.0	719269743.0	0.6	359624328.0	1.0	0.0	1.0	160.0	267.0	424.0	353339878.0	1.0	15027329.0	338312549.0	26677412.0	692572321.0	298.7	125.9	1211943557.0	1.0	0.9	0.9	282241843658.0
1136_3WJ-T1-TDNA-1_A23MHWWLT4_1.md	746414230.0	6731.0	337811345.0	0.5	168902050.0	1.0	0.0	1.0	128.0	199.0	308.0	165463416.0	1.0	5000912.0	160462504.0	9411681.0	328392933.0	223.9	87.7	408602885.0	1.0	0.9	0.9	105506096457.0
1136_4GR-T1-TDNA-1_A23MHWWLT4_1.md	1040220240.0	10242.0	479396723.0	0.5	239692918.0	1.0	0.0	1.0	137.0	218.0	345.0	235786995.0	1.0	8920316.0	226866679.0	16513230.0	462873251.0	247.7	100.9	560823517.0	1.0	0.9	0.9	149105254405.0
1136_4XR-T1-TDNA-1_A23MHWWLT4_1.md	1198380686.0	10644.0	526903639.0	0.6	263446115.0	1.0	0.0	1.0	162.0	266.0	410.0	259883109.0	1.0	10655134.0	249227975.0	19060096.0	507832899.0	292.9	116.9	671477047.0	1.0	0.9	0.9	175536769179.0
1136_4Z5-T1-TDNA-1_A23MHWWLT4_1.md	1513892006.0	19666.0	489402082.0	0.7	244690891.0	1.0	0.0	1.0	113.0	168.0	257.0	240081788.0	1.0	6358676.0	233723112.0	12210434.0	477171982.0	190.2	71.6	1024489924.0	1.0	0.9	0.9	208518040149.0
1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.md	809484368.0	8646.0	416233569.0	0.5	208112211.0	1.0	0.0	1.0	130.0	203.0	312.0	205389449.0	1.0	7383120.0	198006329.0	13829950.0	402394973.0	227.2	88.2	393250799.0	1.0	0.9	0.9	114870693862.0
1136_5KC-T1-TDNA-1_A23MHWWLT4_1.md	980697938.0	8025.0	502742878.0	0.5	251367062.0	1.0	0.0	1.0	152.0	254.0	397.0	248792028.0	1.0	10624626.0	238167402.0	19154477.0	483580376.0	281.5	115.5	477955060.0	1.0	0.9	0.9	142446157414.0
1136_5L2-T1-TDNA-1_A23MHWWLT4_1.md	998315166.0	8999.0	471656702.0	0.5	235823459.0	1.0	0.0	1.0	165.0	279.0	436.0	233085278.0	1.0	10154660.0	222930618.0	17920349.0	453727354.0	307.2	126.4	526658464.0	1.0	0.9	0.9	146277740745.0
1136_5Q-T1-TDNA-1_A23MHWWLT4_1.md	1203678152.0	493022.0	539332623.0	0.6	269419074.0	1.0	0.0	1.0	164.0	272.0	420.0	265467673.0	1.0	11461826.0	254005847.0	20466707.0	518372894.0	299.0	120.0	664345529.0	1.0	0.9	0.9	176312354948.0
1136_5TB-T1-TDNA-1_A23MHWWLT4_1.md	1823089358.0	19133.0	663741800.0	0.6	331860944.0	1.0	0.0	1.0	142.0	226.0	349.0	327020011.0	1.0	11315672.0	315704339.0	20838731.0	642883936.0	252.0	99.6	1159347558.0	1.0	0.9	0.9	261776636390.0
1136_6G2-T1-TDNA-1_A23MHWWLT4_1.md	1081074494.0	10323.0	498930824.0	0.5	249459929.0	1.0	0.0	1.0	139.0	224.0	353.0	245634966.0	1.0	9406204.0	236228762.0	17344305.0	481576196.0	252.7	103.1	582143670.0	1.0	0.9	0.9	154930705871.0
1136_6TL-T1-TDNA-1_A23MHWWLT4_1.md	896285704.0	7758.0	403169800.0	0.6	201580757.0	1.0	0.0	1.0	133.0	213.0	336.0	199039409.0	1.0	7232755.0	191806654.0	13373842.0	389788200.0	240.6	97.9	493115904.0	1.0	0.9	0.9	127819297640.0
1136_7GC-T1-TDNA-1_A23MHWWLT4_1.md	1525524812.0	16430.0	583796096.0	0.6	291889483.0	1.0	0.0	1.0	132.0	209.0	321.0	287762562.0	1.0	9889707.0	277872855.0	18470590.0	565309076.0	232.7	90.7	941728716.0	1.0	0.9	0.9	216356305435.0
1136_7OW-T1-TDNA-1_A23MHWWLT4_1.md	1292740676.0	11895.0	550934406.0	0.6	275460855.0	1.0	0.0	1.0	161.0	268.0	419.0	271263035.0	1.0	11125895.0	260137140.0	19727008.0	531195503.0	296.8	121.5	741806270.0	1.0	0.9	0.9	188792883561.0
1136_8DV-T1-TDNA-1_A23MHWWLT4_1.md	902492764.0	9531.0	384818695.0	0.6	192404276.0	1.0	0.0	1.0	118.0	180.0	290.0	189554688.0	1.0	5565424.0	183989264.0	10539070.0	374270094.0	210.9	87.3	517674069.0	1.0	0.9	0.9	125146025075.0
1136_27F-T1-TDNA-1_A23MHWWLT4_1.md	2051161300.0	24095.0	740879491.0	0.6	370427287.0	1.0	0.0	1.0	139.0	220.0	341.0	364575574.0	1.0	13463605.0	351111969.0	24967804.0	715887592.0	246.5	98.0	1310281809.0	1.0	0.9	0.9	293685423514.0
1136_76X-T1-TDNA-1_A23MHWWLT4_1.md	1081414144.0	10101.0	530451435.0	0.5	265220316.0	1.0	0.0	1.0	135.0	215.0	330.0	260968417.0	1.0	10280128.0	250688289.0	19202344.0	511238990.0	238.9	93.4	550962709.0	1.0	0.9	0.9	154240364314.0
1136_81F-T1-TDNA-1_A23MHWWLT4_1.md	1170861098.0	14485.0	511916090.0	0.6	255950517.0	1.0	0.0	1.0	102.0	144.0	207.0	251154490.0	1.0	6291394.0	244863096.0	12433471.0	499468134.0	157.9	51.7	658945008.0	1.0	0.9	0.9	151732043577.0
1136_85O-T1-TDNA-1_A23MHWWLT4_1.md	860977808.0	10042.0	385341887.0	0.6	192665595.0	1.0	0.0	1.0	133.0	217.0	343.0	189090783.0	1.0	6196671.0	182894112.0	11455669.0	373876176.0	245.0	101.4	475635921.0	1.0	0.9	0.9	122641549988.0
1136_86S-T1-TDNA-1_A23MHWWLT4_1.md	1415215252.0	13868.0	549776105.0	0.6	274880777.0	1.0	0.0	1.0	137.0	218.0	340.0	271513271.0	1.0	9280847.0	262232424.0	17144397.0	532617840.0	244.5	97.6	865439147.0	1.0	0.9	0.9	202273421300.0
1136_87O-T1-TDNA-1_A23MHWWLT4_1.md	1289899336.0	13338.0	567249384.0	0.6	283617652.0	1.0	0.0	1.0	141.0	230.0	364.0	280543946.0	1.0	10421357.0	270122589.0	19102270.0	548133776.0	259.6	107.3	722649952.0	1.0	0.9	0.9	185760910018.0
1136_253-T1-TDNA-1_A23MHWWLT4_1.md	1291015638.0	10971.0	517975318.0	0.6	258981722.0	1.0	0.0	1.0	165.0	276.0	433.0	252890964.0	1.0	9714167.0	243176797.0	17177551.0	500786796.0	305.4	125.6	773040320.0	1.0	0.9	0.9	188639083725.0
FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1.md	1256062814.0	13001.0	583069765.0	0.5	291527927.0	1.0	0.0	1.0	197.0	333.0	507.0	286980924.0	1.0	13967735.0	273013189.0	24207835.0	558848929.0	357.4	141.4	672993049.0	1.0	0.9	0.9	185904350293.0
NTC_0002_0015_A23MHWWLT4_1.md	41412.0	22.0	2698.0	0.9	1338.0	1.0	0.0	1.0	119.0	194.0	307.0	322.0	0.2	8.0	314.0	15.0	2661.0	218.6	92.6	38714.0	0.9	0.6	0.6	6230752.0

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: seqtool_depth_stats_foresight_clarity_targets_hg38_bed_table

Sort	Column	Description	ID
\|\|	reads	reads	`seqtool-reads`
\|\|	unmapped	unmapped	`seqtool-unmapped`
\|\|	frac_unmapped	frac_unmapped	`seqtool-frac_unmapped`
\|\|	unique_reads	unique_reads	`seqtool-unique_reads`
\|\|	frac_dupes	frac_dupes	`seqtool-frac_dupes`
\|\|	pairs	pairs	`seqtool-pairs`
\|\|	frac_reads_on_target	frac_reads_on_target	`seqtool-frac_reads_on_target`
\|\|	frac_reads_off_target	frac_reads_off_target	`seqtool-frac_reads_off_target`
\|\|	frac_pairs_on_target	frac_pairs_on_target	`seqtool-frac_pairs_on_target`
\|\|	frac_pairs_off_target	frac_pairs_off_target	`seqtool-frac_pairs_off_target`
\|\|	frag_size_q20	frag_size_q20	`seqtool-frag_size_q20`
\|\|	frag_size_median	frag_size_median	`seqtool-frag_size_median`
\|\|	frag_size_q80	frag_size_q80	`seqtool-frag_size_q80`
\|\|	proper_pairs	proper_pairs	`seqtool-proper_pairs`
\|\|	frac_proper_pairs	frac_proper_pairs	`seqtool-frac_proper_pairs`
\|\|	pairs_on_target	pairs_on_target	`seqtool-pairs_on_target`
\|\|	pairs_off_target	pairs_off_target	`seqtool-pairs_off_target`
\|\|	reads_on_target	reads_on_target	`seqtool-reads_on_target`
\|\|	reads_off_target	reads_off_target	`seqtool-reads_off_target`
\|\|	frag_size_mean	frag_size_mean	`seqtool-frag_size_mean`
\|\|	frag_size_std	frag_size_std	`seqtool-frag_size_std`
\|\|	dupes	dupes	`seqtool-dupes`
\|\|	n_q20	n_q20	`seqtool-n_q20`
\|\|	n_q25	n_q25	`seqtool-n_q25`
\|\|	n_q30	n_q30	`seqtool-n_q30`
\|\|	n_bases	n_bases	`seqtool-n_bases`

Fragment Size

Fragment size statistics.

Showing ⁴⁸/₄₈ rows and ⁸/₈ columns.

Sample Name	fragment_size_mean	fragment_size_median	fragment_size_std	fragment_size_q10	fragment_size_q25	fragment_size_q50	fragment_size_q75	fragment_size_q90
659_Kh-T1-TDNA-1_A23MHWWLT4_1.md	507.2	365.0	61521.7	176.0	251.0	365.0	499.0	620.0
659_Lx-T1-TDNA-1_A23MHWWLT4_1.md	198.6	174.0	99.6	101.0	127.0	174.0	244.0	321.0
659_bR4-T1-TDNA-1_A23MHWWLT4_1.md	489.5	327.0	68601.0	150.0	222.0	327.0	449.0	566.0
659_bgw-T1-TDNA-1_A23MHWWLT4_1.md	697.1	239.0	117201.4	118.0	165.0	239.0	345.0	458.0
659_cAd-T1-TDNA-1_A23MHWWLT4_1.md	517.9	281.0	80880.4	129.0	187.0	281.0	391.0	500.0
659_cVw-T1-TDNA-1_A23MHWWLT4_1.md	424.0	312.0	52831.7	141.0	205.0	312.0	441.0	559.0
659_cfy-T1-TDNA-1_A23MHWWLT4_1.md	485.6	260.0	72045.8	125.0	177.0	260.0	372.0	484.0
659_cuO-T1-TDNA-1_A23MHWWLT4_1.md	622.1	190.0	119631.3	93.0	131.0	190.0	270.0	361.0
659_d0M-T1-TDNA-1_A23MHWWLT4_1.md	572.8	305.0	85855.2	149.0	209.0	305.0	430.0	550.0
659_dm4-T1-TDNA-1_A23MHWWLT4_1.md	1743.8	151.0	210038.1	89.0	113.0	151.0	204.0	266.0
659_eKx-T1-TDNA-1_A23MHWWLT4_1.md	235.6	215.5	118.3	103.1	139.0	215.5	299.0	405.0
1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.md	10821.4	113.0	574239.4	71.0	88.0	113.0	147.0	188.0
1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.md	2193.3	176.0	237242.0	98.0	127.0	176.0	246.0	331.0
1029_FRC-T1-TDNA-1_A23MHWWLT4_1.md	862.2	266.0	133740.0	118.0	172.0	266.0	388.0	505.0
1029_FZX-T1-TDNA-1_A23MHWWLT4_1.md	754.9	323.0	109203.4	137.0	208.0	323.0	454.0	573.0
1029_HTI-T1-TDNA-1_A23MHWWLT4_1.md	1134.6	221.0	162275.2	113.0	153.0	221.0	320.0	425.0
1029_I9B-T1-TDNA-1_A23MHWWLT4_1.md	891.3	280.0	125479.1	124.0	181.0	280.0	405.0	526.0
1029_IWL-T1-TDNA-1_A23MHWWLT4_1.md	1472.5	146.0	198168.6	88.0	110.0	146.0	197.0	259.0
1029_N5D-T1-TDNA-1_A23MHWWLT4_1.md	649.7	325.0	94387.6	134.0	206.0	325.0	460.0	583.0
1029_T05-T1-TDNA-1_A23MHWWLT4_1.md	745.7	289.0	112893.3	125.0	186.0	289.0	415.0	534.0
1047_JG-T1-TDNA-1_A23MHWWLT4_1.md	645.0	209.0	107832.0	111.0	149.0	209.0	302.0	403.0
1136_00H-T1-TDNA-1_A23MHWWLT4_1.md	548.3	355.0	74210.8	147.0	221.0	355.0	494.0	615.0
1136_3LU-T1-TDNA-1_A23MHWWLT4_1.md	515.1	358.0	67049.2	143.0	224.0	358.0	501.0	624.0
1136_3MV-T1-TDNA-1_A23MHWWLT4_1.md	733.7	306.0	108650.9	133.0	195.0	306.0	440.0	562.0
1136_3U6-T1-TDNA-1_A23MHWWLT4_1.md	564.2	297.0	86674.4	129.0	186.0	297.0	427.0	550.0
1136_3WJ-T1-TDNA-1_A23MHWWLT4_1.md	1321.2	211.0	172583.2	106.0	144.0	211.0	306.0	410.0
1136_4GR-T1-TDNA-1_A23MHWWLT4_1.md	1122.5	233.0	153468.3	114.0	157.0	233.0	344.0	462.0
1136_4XR-T1-TDNA-1_A23MHWWLT4_1.md	546.3	299.0	78284.9	133.0	196.0	299.0	422.0	537.0
1136_4Z5-T1-TDNA-1_A23MHWWLT4_1.md	2357.8	176.0	254223.4	96.0	126.0	176.0	252.0	344.0
1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.md	882.2	213.0	139629.5	108.0	146.0	213.0	309.0	414.0
1136_5KC-T1-TDNA-1_A23MHWWLT4_1.md	524.0	281.0	80406.1	123.0	182.0	281.0	406.0	524.0
1136_5L2-T1-TDNA-1_A23MHWWLT4_1.md	466.3	309.0	64305.1	133.0	199.0	309.0	440.0	559.0
1136_5Q-T1-TDNA-1_A23MHWWLT4_1.md	524.7	303.0	71632.2	134.0	198.0	303.0	427.0	543.0
1136_5TB-T1-TDNA-1_A23MHWWLT4_1.md	837.0	238.0	129671.6	114.0	160.0	238.0	347.0	457.0
1136_6G2-T1-TDNA-1_A23MHWWLT4_1.md	1125.3	239.0	161173.7	112.0	159.0	239.0	353.0	470.0
1136_6TL-T1-TDNA-1_A23MHWWLT4_1.md	867.3	225.0	134199.1	108.0	151.0	225.0	334.0	445.0
1136_7GC-T1-TDNA-1_A23MHWWLT4_1.md	1030.2	218.0	153280.0	107.0	148.0	218.0	317.0	423.0
1136_7OW-T1-TDNA-1_A23MHWWLT4_1.md	681.5	296.0	105732.6	129.0	191.0	296.0	425.0	544.0
1136_8DV-T1-TDNA-1_A23MHWWLT4_1.md	1156.7	189.0	165800.6	100.0	133.0	189.0	286.0	402.0
1136_27F-T1-TDNA-1_A23MHWWLT4_1.md	1333.5	230.0	179720.0	111.0	155.0	230.0	338.0	451.0
1136_76X-T1-TDNA-1_A23MHWWLT4_1.md	1080.7	227.0	157071.1	110.0	153.0	227.0	329.0	436.0
1136_81F-T1-TDNA-1_A23MHWWLT4_1.md	3509.4	144.0	310295.6	86.0	109.0	144.0	195.0	255.0
1136_85O-T1-TDNA-1_A23MHWWLT4_1.md	1124.7	229.0	155024.1	108.0	151.0	229.0	339.0	455.0
1136_86S-T1-TDNA-1_A23MHWWLT4_1.md	841.1	230.0	128139.8	111.0	154.0	230.0	337.0	447.0
1136_87O-T1-TDNA-1_A23MHWWLT4_1.md	551.4	255.0	89245.2	116.0	166.0	255.0	374.0	493.0
1136_253-T1-TDNA-1_A23MHWWLT4_1.md	724.6	300.0	107773.3	131.0	194.0	300.0	431.0	552.0
FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1.md	494.7	370.0	57121.0	158.0	244.0	370.0	503.0	619.0
NTC_0002_0015_A23MHWWLT4_1.md	141.0	141.0	0.0	141.0	141.0	141.0	141.0	141.0

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: seqtool_fragment_size_table

Sort	Column	Description	ID
\|\|	fragment_size_mean	fragment_size_mean	`seqtool-fragment_size_mean`
\|\|	fragment_size_median	fragment_size_median	`seqtool-fragment_size_median`
\|\|	fragment_size_std	fragment_size_std	`seqtool-fragment_size_std`
\|\|	fragment_size_q10	fragment_size_q10	`seqtool-fragment_size_q10`
\|\|	fragment_size_q25	fragment_size_q25	`seqtool-fragment_size_q25`
\|\|	fragment_size_q50	fragment_size_q50	`seqtool-fragment_size_q50`
\|\|	fragment_size_q75	fragment_size_q75	`seqtool-fragment_size_q75`
\|\|	fragment_size_q90	fragment_size_q90	`seqtool-fragment_size_q90`

GC Bias

GC bias plot by panel.

Created with MultiQC

Mosdepth

Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing.https://github.com/brentp/mosdepthDOI: 10.1093/bioinformatics/btx699

Cumulative coverage distribution

Proportion of bases in the reference genome with, at least, a given depth of coverage. Note that for 48 samples, a BED file was provided, so the data was calculated across those regions. For 48 samples, it's calculated across the entire genome length. 48 samples have both global and region reports, and we are showing the data for regions

For a set of DNA or RNA reads mapped to a reference sequence, such as a genome or transcriptome, the depth of coverage at a given base position is the number of high-quality reads that map to the reference at that position, while the breadth of coverage is the fraction of the reference sequence to which reads have been mapped with at least a given depth of coverage (Sims et al. 2014).

Defining coverage breadth in terms of coverage depth is useful, because sequencing experiments typically require a specific minimum depth of coverage over the region of interest (Sims et al. 2014), so the extent of the reference sequence that is amenable to analysis is constrained to lie within regions that have sufficient depth. With inadequate sequencing breadth, it can be difficult to distinguish the absence of a biological feature (such as a gene) from a lack of data (Green 2007).

For increasing coverage depths (1×, 2×, …, N×), coverage breadth is calculated as the percentage of the reference sequence that is covered by at least that number of reads, then plots coverage breadth (y-axis) against coverage depth (x-axis). This plot shows the relationship between sequencing depth and breadth for each read dataset, which can be used to gauge, for example, the likely effect of a minimum depth filter on the fraction of a genome available for analysis.

Created with MultiQC

Average coverage per contig

Average coverage per contig or chromosome

Created with MultiQC

XY coverage

Created with MultiQC

Picard

Tools for manipulating high-throughput sequencing data.http://broadinstitute.github.io/picard

Alignment Summary

Please note that Picard's read counts are divided by two for paired-end data. Total bases (including unaligned) is not provided.

Alignment summary metrics from Sentieon (Picard format)

Created with MultiQC

Mean read length

The mean read length of the set of reads examined.

Created with MultiQC

Hybrid-selection metrics

Parsed from Picard HsMetrics tool that takes a SAM/BAM file input and collects metrics that are specific for sequence datasets generated through hybrid-selection. Hybrid-selection (HS) is the most commonly used technique to capture exon-specific sequences for targeted sequencing experiments such as exome sequencing.

Hybrid selection metrics from Sentieon (Picard format)

Showing ⁴⁸/₄₈ rows and ¹⁹/₂₄ columns.

Sample Name	At dropout	Bait design efficiency	Bait territory	Fold 80 base penalty	Fold enrichment	Gc dropout	Near-bait bases	Off-bait bases	On-bait bases	On-target bases	Usable bases on-bait	Usable bases on-target	PF bases aligned	PF reads	Selected bases	PF unique reads	PF unique bases aligned	PF unique reads aligned	Total reads	Mean bait coverage	Mean target coverage	On-bait vs selected	Target territory	Zero coverage targets
659_Kh-T1-TDNA-1_A23MHWWLT4_1	1.6	1.0	46390665.0	2.9	42.8	4.9	41517.8Mb	24079.2Mb	105761.4Mb	37134.9Mb	61.8%	21.7%	171358.5Mb	1148.6M	85.9%	495.6M	74022.4Mb	495.6M	1148.6M	2279.8	800.5	0.7	46390665.0	0.7%
659_Lx-T1-TDNA-1_A23MHWWLT4_1	10.8	1.0	46390665.0	0.0	44.8	0.0	11.5Mb	13.5Mb	45.6Mb	8.4Mb	63.9%	11.8%	70.6Mb	0.5M	80.8%	0.2M	20.5Mb	0.1M	0.5M	1.0	0.2	0.8	46390665.0	82.0%
659_bR4-T1-TDNA-1_A23MHWWLT4_1	0.9	1.0	46390665.0	2.4	43.6	8.2	55600.5Mb	33978.9Mb	151252.7Mb	38430.4Mb	62.9%	16.0%	240832.1Mb	1626.2M	85.9%	538.5M	79867.6Mb	538.5M	1626.2M	3260.4	828.4	0.7	46390665.0	0.7%
659_bgw-T1-TDNA-1_A23MHWWLT4_1	1.3	1.0	46390665.0	2.1	45.4	7.8	37669.6Mb	27038.5Mb	122469.1Mb	31151.5Mb	65.5%	16.7%	187177.2Mb	1291.4M	85.6%	459.5M	66575.2Mb	459.5M	1291.4M	2639.9	671.5	0.8	46390665.0	0.9%
659_cAd-T1-TDNA-1_A23MHWWLT4_1	0.6	1.0	46390665.0	2.2	45.0	12.2	38367.5Mb	24828.3Mb	116547.9Mb	29126.9Mb	64.9%	16.2%	179743.6Mb	1226.3M	86.2%	422.1M	61701.2Mb	422.1M	1226.3M	2512.3	627.9	0.8	46390665.0	0.9%
659_cVw-T1-TDNA-1_A23MHWWLT4_1	0.9	1.0	46390665.0	2.5	44.1	7.9	52463.7Mb	32170.6Mb	148062.9Mb	45163.3Mb	63.7%	19.4%	232697.1Mb	1576.9M	86.2%	610.9M	90122.4Mb	610.9M	1576.9M	3191.7	973.5	0.7	46390665.0	0.7%
659_cfy-T1-TDNA-1_A23MHWWLT4_1	1.1	1.0	46390665.0	2.3	45.2	6.7	43007.7Mb	28225.2Mb	133720.5Mb	45448.2Mb	65.4%	22.2%	204953.5Mb	1403.5M	86.2%	618.0M	90211.5Mb	618.0M	1403.5M	2882.5	979.7	0.8	46390665.0	0.8%
659_cuO-T1-TDNA-1_A23MHWWLT4_1	0.6	1.0	46390665.0	1.8	47.6	7.6	4105.3Mb	3554.5Mb	16735.0Mb	3689.3Mb	68.6%	15.1%	24394.9Mb	176.3M	85.4%	59.2M	8143.5Mb	59.2M	176.3M	360.7	79.5	0.8	46390665.0	1.2%
659_d0M-T1-TDNA-1_A23MHWWLT4_1	1.6	1.0	46390665.0	2.4	44.3	5.9	41612.5Mb	24604.2Mb	116779.0Mb	35372.2Mb	63.9%	19.4%	182995.7Mb	1236.2M	86.6%	489.1M	72334.4Mb	489.1M	1236.2M	2517.3	762.5	0.7	46390665.0	0.8%
659_dm4-T1-TDNA-1_A23MHWWLT4_1	2.2	1.0	46390665.0	1.8	47.8	4.7	20423.6Mb	24888.4Mb	100539.1Mb	27396.7Mb	69.0%	18.8%	145851.1Mb	1096.6M	82.9%	433.4M	57765.2Mb	433.4M	1096.6M	2167.2	590.6	0.8	46390665.0	1.0%
659_eKx-T1-TDNA-1_A23MHWWLT4_1	7.4	1.0	46390665.0	0.0	43.6	0.2	5.6Mb	6.1Mb	19.9Mb	3.6Mb	61.8%	11.2%	31.6Mb	0.2M	80.6%	0.1M	8.9Mb	0.1M	0.2M	0.4	0.1	0.8	46390665.0	91.1%
1029_BCAN-T1-TDNA-1_A23MHWWLT4_1	4.3	1.0	46390665.0	1.9	41.0	1.5	5514.8Mb	19116.0Mb	35546.4Mb	10664.3Mb	58.7%	17.6%	60177.3Mb	525.1M	68.2%	242.6M	27906.2Mb	242.6M	525.1M	766.2	229.9	0.9	46390665.0	1.3%
1029_BICJ-T1-TDNA-1_A23MHWWLT4_1	10.0	1.0	46390665.0	2.5	45.8	0.0	22541.8Mb	23222.3Mb	89173.7Mb	28222.9Mb	66.1%	20.9%	134937.8Mb	980.3M	82.8%	439.2M	60235.7Mb	439.2M	980.3M	1922.2	608.4	0.8	46390665.0	1.0%
1029_FRC-T1-TDNA-1_A23MHWWLT4_1	5.0	1.0	46390665.0	2.3	43.5	2.2	43246.7Mb	33190.6Mb	128994.4Mb	32618.2Mb	62.9%	15.9%	205431.6Mb	1419.9M	83.8%	496.6M	71744.2Mb	496.6M	1419.9M	2780.6	703.1	0.7	46390665.0	0.7%
1029_FZX-T1-TDNA-1_A23MHWWLT4_1	9.0	1.0	46390665.0	3.1	42.4	0.8	43036.7Mb	29309.2Mb	113600.9Mb	36135.4Mb	61.2%	19.5%	185946.8Mb	1266.1M	84.2%	521.0M	76423.0Mb	521.0M	1266.1M	2448.8	778.9	0.7	46390665.0	0.7%
1029_HTI-T1-TDNA-1_A23MHWWLT4_1	7.5	1.0	46390665.0	2.4	44.6	0.4	39963.0Mb	34262.6Mb	133319.7Mb	39781.4Mb	64.3%	19.2%	207545.3Mb	1448.6M	83.5%	595.9M	85361.4Mb	595.8M	1448.6M	2873.8	857.5	0.8	46390665.0	0.9%
1029_I9B-T1-TDNA-1_A23MHWWLT4_1	5.5	1.0	46390665.0	2.5	43.5	1.7	48964.5Mb	34956.4Mb	140816.3Mb	38587.0Mb	62.7%	17.2%	224737.2Mb	1544.4M	84.4%	568.1M	82687.2Mb	568.0M	1544.4M	3035.4	831.8	0.7	46390665.0	0.8%
1029_IWL-T1-TDNA-1_A23MHWWLT4_1	2.0	1.0	46390665.0	1.7	47.2	0.7	12467.7Mb	16676.6Mb	61904.8Mb	18032.1Mb	68.0%	19.8%	91049.1Mb	697.6M	81.7%	297.3M	38742.2Mb	297.3M	697.6M	1334.4	388.7	0.8	46390665.0	1.1%
1029_N5D-T1-TDNA-1_A23MHWWLT4_1	7.8	1.0	46390665.0	2.7	42.4	1.2	69428.1Mb	47092.6Mb	183560.3Mb	49922.6Mb	61.2%	16.7%	300081.0Mb	2048.1M	84.3%	753.4M	110331.6Mb	753.3M	2048.1M	3956.8	1076.1	0.7	46390665.0	0.7%
1029_T05-T1-TDNA-1_A23MHWWLT4_1	7.7	1.0	46390665.0	2.6	42.9	1.5	49314.0Mb	36043.9Mb	138748.6Mb	35551.6Mb	62.0%	15.9%	224106.5Mb	1538.2M	83.9%	537.3M	78440.0Mb	537.3M	1538.2M	2990.9	766.4	0.7	46390665.0	0.8%
1047_JG-T1-TDNA-1_A23MHWWLT4_1	1.0	1.0	46390665.0	1.8	46.6	5.6	82002.9Mb	62997.9Mb	296229.6Mb	63899.7Mb	67.2%	14.5%	441230.4Mb	3083.1M	85.7%	975.3M	139704.8Mb	975.3M	3083.1M	6385.5	1377.4	0.8	46390665.0	0.9%
1136_00H-T1-TDNA-1_A23MHWWLT4_1	5.1	1.0	46390665.0	2.9	42.6	1.6	48623.6Mb	28642.7Mb	123269.4Mb	40867.9Mb	61.6%	20.4%	200535.6Mb	1357.1M	85.7%	564.3M	83418.3Mb	564.3M	1357.1M	2657.2	881.0	0.7	46390665.0	0.7%
1136_3LU-T1-TDNA-1_A23MHWWLT4_1	3.2	1.0	46390665.0	2.8	43.0	4.0	50252.3Mb	29846.5Mb	130802.6Mb	40565.8Mb	62.1%	19.3%	210901.4Mb	1428.9M	85.8%	556.5M	82227.4Mb	556.5M	1428.9M	2819.6	874.4	0.7	46390665.0	0.7%
1136_3MV-T1-TDNA-1_A23MHWWLT4_1	7.5	1.0	46390665.0	2.9	44.0	0.5	41216.3Mb	25799.3Mb	116299.3Mb	37164.2Mb	63.6%	20.3%	183314.9Mb	1247.7M	85.9%	520.5M	76500.8Mb	520.5M	1247.7M	2507.0	791.7	0.7	46390665.0	0.8%
1136_3U6-T1-TDNA-1_A23MHWWLT4_1	5.0	1.0	46390665.0	2.7	43.9	0.6	64542.5Mb	39125.6Mb	178956.1Mb	51814.1Mb	63.4%	18.4%	282624.2Mb	1931.2M	86.2%	719.3M	105296.5Mb	719.2M	1931.2M	3857.6	1116.9	0.7	46390665.0	0.8%
1136_3WJ-T1-TDNA-1_A23MHWWLT4_1	7.7	1.0	46390665.0	2.2	44.2	0.4	19512.5Mb	18794.2Mb	67329.7Mb	21554.9Mb	63.8%	20.4%	105636.4Mb	746.4M	82.2%	337.8M	47686.4Mb	337.8M	746.4M	1451.4	464.6	0.8	46390665.0	0.8%
1136_4GR-T1-TDNA-1_A23MHWWLT4_1	8.5	1.0	46390665.0	2.6	44.4	0.1	30366.8Mb	23289.2Mb	95745.1Mb	33133.7Mb	64.2%	22.2%	149401.1Mb	1040.2M	84.4%	479.4M	68786.2Mb	479.4M	1040.2M	2063.9	714.2	0.8	46390665.0	0.7%
1136_4XR-T1-TDNA-1_A23MHWWLT4_1	4.9	1.0	46390665.0	2.7	43.6	3.0	39390.5Mb	25862.3Mb	110573.8Mb	38299.8Mb	63.0%	21.8%	175826.6Mb	1198.4M	85.3%	526.9M	77121.0Mb	526.9M	1198.4M	2383.5	825.6	0.7	46390665.0	0.8%
1136_4Z5-T1-TDNA-1_A23MHWWLT4_1	5.1	1.0	46390665.0	2.1	48.9	0.5	30164.2Mb	31216.4Mb	147157.7Mb	31277.6Mb	70.6%	15.0%	208538.3Mb	1513.9M	85.0%	489.4M	67157.3Mb	489.4M	1513.9M	3172.1	659.5	0.8	46390665.0	0.9%
1136_4ZB-T1-TDNA-1_A23MHWWLT4_1	6.0	1.0	46390665.0	2.5	45.6	1.2	21574.7Mb	17833.5Mb	75531.3Mb	29124.3Mb	65.8%	25.4%	114939.4Mb	809.5M	84.5%	416.2M	58908.0Mb	416.2M	809.5M	1628.2	627.8	0.8	46390665.0	1.0%
1136_5KC-T1-TDNA-1_A23MHWWLT4_1	5.0	1.0	46390665.0	2.7	44.4	2.3	31368.0Mb	20030.7Mb	91305.0Mb	37367.6Mb	64.1%	26.2%	142703.7Mb	980.7M	86.0%	502.7M	72885.9Mb	502.7M	980.7M	1968.2	805.5	0.7	46390665.0	0.9%
1136_5L2-T1-TDNA-1_A23MHWWLT4_1	1.7	1.0	46390665.0	2.7	44.0	6.7	33136.2Mb	20437.2Mb	92844.9Mb	35422.4Mb	63.5%	24.2%	146418.3Mb	998.3M	86.0%	471.7M	68972.1Mb	471.6M	998.3M	2001.4	763.6	0.7	46390665.0	0.7%
1136_5Q-T1-TDNA-1_A23MHWWLT4_1	5.8	1.0	46390665.0	3.0	43.5	2.8	39880.0Mb	25837.5Mb	110865.8Mb	39200.6Mb	62.9%	22.2%	176583.3Mb	1203.7M	85.4%	539.3M	78913.7Mb	538.8M	1203.7M	2389.8	845.0	0.7	46390665.0	0.7%
1136_5TB-T1-TDNA-1_A23MHWWLT4_1	6.1	1.0	46390665.0	2.4	44.8	1.0	53435.0Mb	39292.8Mb	169402.6Mb	45478.6Mb	64.7%	17.4%	262130.4Mb	1823.1M	85.0%	663.7M	95520.9Mb	663.7M	1823.1M	3651.7	980.3	0.8	46390665.0	0.7%
1136_6G2-T1-TDNA-1_A23MHWWLT4_1	11.2	1.0	46390665.0	2.8	44.8	0.0	32513.9Mb	22456.6Mb	100249.4Mb	34691.8Mb	64.7%	22.4%	155220.0Mb	1081.1M	85.5%	498.9M	71562.0Mb	498.9M	1081.1M	2161.0	747.8	0.8	46390665.0	0.8%
1136_6TL-T1-TDNA-1_A23MHWWLT4_1	0.5	1.0	46390665.0	2.7	45.1	12.2	24301.3Mb	20355.8Mb	83287.2Mb	28321.6Mb	65.2%	22.2%	127944.3Mb	896.3M	84.1%	403.2M	57340.8Mb	403.2M	896.3M	1795.3	610.5	0.8	46390665.0	0.9%
1136_7GC-T1-TDNA-1_A23MHWWLT4_1	4.7	1.0	46390665.0	2.2	45.6	1.8	41130.4Mb	33028.7Mb	142269.7Mb	39656.7Mb	65.8%	18.3%	216428.8Mb	1525.5M	84.7%	583.8M	82730.6Mb	583.8M	1525.5M	3066.8	854.8	0.8	46390665.0	0.8%
1136_7OW-T1-TDNA-1_A23MHWWLT4_1	3.4	1.0	46390665.0	2.6	43.9	3.5	42469.9Mb	26978.9Mb	119536.8Mb	39797.9Mb	63.3%	21.1%	188985.6Mb	1292.7M	85.7%	550.9M	80395.9Mb	550.9M	1292.7M	2576.7	857.9	0.7	46390665.0	0.7%
1136_8DV-T1-TDNA-1_A23MHWWLT4_1	8.1	1.0	46390665.0	2.1	45.5	0.1	22691.4Mb	20332.6Mb	82236.3Mb	24727.5Mb	65.7%	19.8%	125260.3Mb	902.5M	83.8%	384.8M	53177.1Mb	384.8M	902.5M	1772.7	533.0	0.8	46390665.0	0.8%
1136_27F-T1-TDNA-1_A23MHWWLT4_1	9.5	1.0	46390665.0	2.7	46.8	0.0	57120.0Mb	38559.7Mb	198552.5Mb	52563.5Mb	67.6%	17.9%	294232.2Mb	2051.2M	86.9%	740.9M	106525.4Mb	740.9M	2051.2M	4280.0	1110.6	0.8	46390665.0	0.7%
1136_76X-T1-TDNA-1_A23MHWWLT4_1	11.4	1.0	46390665.0	2.9	44.0	0.1	30657.5Mb	25753.5Mb	98122.5Mb	36112.5Mb	63.6%	23.4%	154533.5Mb	1081.4M	83.3%	530.5M	75608.3Mb	530.4M	1081.4M	2115.1	778.4	0.8	46390665.0	0.8%
1136_81F-T1-TDNA-1_A23MHWWLT4_1	16.7	1.0	46390665.0	2.4	45.3	0.4	21289.4Mb	31254.6Mb	99061.8Mb	29682.1Mb	65.3%	19.6%	151605.8Mb	1170.9M	79.4%	511.9M	66442.3Mb	511.9M	1170.9M	2135.4	639.8	0.8	46390665.0	1.1%
1136_85O-T1-TDNA-1_A23MHWWLT4_1	3.1	1.0	46390665.0	2.3	44.7	5.2	23929.6Mb	19772.6Mb	79283.8Mb	26255.8Mb	64.6%	21.4%	122986.0Mb	861.0M	83.9%	385.3M	55082.9Mb	385.3M	861.0M	1709.0	566.0	0.8	46390665.0	0.9%
1136_86S-T1-TDNA-1_A23MHWWLT4_1	1.7	1.0	46390665.0	2.2	45.5	5.3	39535.0Mb	30297.0Mb	132809.9Mb	38383.1Mb	65.7%	19.0%	202641.9Mb	1415.2M	85.0%	549.8M	78811.0Mb	549.8M	1415.2M	2862.9	827.4	0.8	46390665.0	0.8%
1136_87O-T1-TDNA-1_A23MHWWLT4_1	9.6	1.0	46390665.0	2.7	44.3	0.3	39308.9Mb	27831.0Mb	118976.5Mb	39812.3Mb	64.0%	21.4%	186116.4Mb	1289.9M	85.0%	567.2M	81565.1Mb	567.2M	1289.9M	2564.7	858.2	0.8	46390665.0	0.8%
1136_253-T1-TDNA-1_A23MHWWLT4_1	8.3	1.0	46390665.0	2.8	42.8	1.2	42737.3Mb	29774.0Mb	116542.9Mb	35291.7Mb	61.8%	18.7%	189054.2Mb	1291.0M	84.3%	518.0M	76053.8Mb	518.0M	1291.0M	2512.2	760.7	0.7	46390665.0	0.7%
FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1	3.9	1.0	46390665.0	3.0	43.3	1.4	46170.0Mb	23861.8Mb	116150.5Mb	44603.5Mb	62.5%	24.0%	186182.3Mb	1256.1M	87.2%	583.1M	86370.9Mb	583.1M	1256.1M	2503.8	961.5	0.7	46390665.0	0.6%
NTC_0002_0015_A23MHWWLT4_1	16.7	1.0	46390665.0	0.0	1.9	5.7	0.0Mb	4.5Mb	0.1Mb	0.0Mb	2.0%	0.5%	4.6Mb	0.0M	3.5%	0.0M	0.4Mb	0.0M	0.0M	0.0	0.0	0.8	46390665.0	99.9%

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: picard_hsmetrics_table_table

Sort	Column	Description	ID	Scale
\|\|	At dropout	A measure of how undercovered <= 50% GC regions are relative to the mean.	`hsmetrics-AT_DROPOUT`
\|\|	Bait design efficiency	Target territory / bait territory. 1 == perfectly efficient, 0.5 = half of baited bases are not target.	`hsmetrics-BAIT_DESIGN_EFFICIENCY`
\|\|	Bait territory	The number of bases which have one or more baits on top of them.	`hsmetrics-BAIT_TERRITORY`
\|\|	Fold 80 base penalty	The fold over-coverage necessary to raise 80% of bases in "non-zero-cvg" targets to the mean coverage level in those targets.	`hsmetrics-FOLD_80_BASE_PENALTY`
\|\|	Fold enrichment	The fold by which the baited region has been amplified above genomic background.	`hsmetrics-FOLD_ENRICHMENT`
\|\|	Gc dropout	A measure of how undercovered >= 50% GC regions are relative to the mean.	`hsmetrics-GC_DROPOUT`
\|\|	Near-bait bases	The number of PF aligned bases that mapped to within a fixed interval of a baited region, but not on a baited region.	`hsmetrics-NEAR_BAIT_BASES`	base_count
\|\|	Off-bait bases	The number of PF aligned bases that mapped to neither on or near a bait.	`hsmetrics-OFF_BAIT_BASES`	base_count
\|\|	On-bait bases	The number of PF aligned bases that mapped to a baited region of the genome.	`hsmetrics-ON_BAIT_BASES`	base_count
\|\|	On-target bases	The number of PF aligned bases that mapped to a targeted region of the genome.	`hsmetrics-ON_TARGET_BASES`	base_count
\|\|	Usable bases on-bait	The number of aligned, de-duped, on-bait bases out of the PF bases available.	`hsmetrics-PCT_USABLE_BASES_ON_BAIT`
\|\|	Usable bases on-target	The number of aligned, de-duped, on-target bases out of the PF bases available.	`hsmetrics-PCT_USABLE_BASES_ON_TARGET`
\|\|	PF bases aligned	The number of PF unique bases that are aligned with mapping score > 0 to the reference genome.	`hsmetrics-PF_BASES_ALIGNED`	base_count
\|\|	PF reads	The number of reads that pass the vendor's filter.	`hsmetrics-PF_READS`	read_count
\|\|	Selected bases	On+Near Bait Bases / PF Bases Aligned.	`hsmetrics-PCT_SELECTED_BASES`
\|\|	PF unique reads	The number of PF reads that are not marked as duplicates.	`hsmetrics-PF_UNIQUE_READS`	read_count
\|\|	PF unique bases aligned	The number of bases in the PF aligned reads that are mapped to a reference base. Accounts for clipping and gaps.	`hsmetrics-PF_UQ_BASES_ALIGNED`	base_count
\|\|	PF unique reads aligned	The number of PF unique reads that are aligned with mapping score > 0 to the reference genome.	`hsmetrics-PF_UQ_READS_ALIGNED`	read_count
\|\|	Total reads	The total number of reads in the SAM or BAM file examine.	`hsmetrics-TOTAL_READS`	read_count
\|\|	Mean bait coverage	The mean coverage of all baits in the experiment.	`hsmetrics-MEAN_BAIT_COVERAGE`
\|\|	Mean target coverage	The mean coverage of targets.	`hsmetrics-MEAN_TARGET_COVERAGE`
\|\|	On-bait vs selected	The percentage of on+near bait bases that are on as opposed to near.	`hsmetrics-ON_BAIT_VS_SELECTED`
\|\|	Target territory	The unique number of target bases in the experiment where target is usually exons etc.	`hsmetrics-TARGET_TERRITORY`
\|\|	Zero coverage targets	The fraction of targets that did not reach coverage=1 over any base.	`hsmetrics-ZERO_CVG_TARGETS_PCT`

Hybrid-selection target coverage

The percentage of all target bases with at least x fold coverage.

Created with MultiQC

Hybrid-selection penalty

The "hybrid selection penalty" incurred to get 80% of target bases to a given coverage.

Can be used with the following formula:

required_aligned_bases = bait_size_bp * desired_coverage * hs_penalty

Created with MultiQC

Insert Size

Plot shows the number of reads at a given insert size. Reads with different orientations are summed.

Insert size distribution from Sentieon (Picard format)

Created with MultiQC

Mark Duplicates

Number of reads, categorised by duplication state. Pair counts are doubled - see help text for details.

Duplicate marking metrics from Sentieon MarkDuplicates

The table in the Picard metrics file contains some columns referring read pairs and some referring to single reads.

To make the numbers in this plot sum correctly, values referring to pairs are doubled according to the scheme below:

READS_IN_DUPLICATE_PAIRS = 2 * READ_PAIR_DUPLICATES
READS_IN_UNIQUE_PAIRS = 2 * (READ_PAIRS_EXAMINED - READ_PAIR_DUPLICATES)
READS_IN_UNIQUE_UNPAIRED = UNPAIRED_READS_EXAMINED - UNPAIRED_READ_DUPLICATES
READS_IN_DUPLICATE_PAIRS_OPTICAL = 2 * READ_PAIR_OPTICAL_DUPLICATES
READS_IN_DUPLICATE_PAIRS_NONOPTICAL = READS_IN_DUPLICATE_PAIRS - READS_IN_DUPLICATE_PAIRS_OPTICAL
READS_IN_DUPLICATE_UNPAIRED = UNPAIRED_READ_DUPLICATES
READS_UNMAPPED = UNMAPPED_READS

Created with MultiQC

Mean Base Quality by Cycle

Plot shows the mean base quality by cycle.

This metric gives an overall snapshot of sequencing machine performance. For most types of sequencing data, the output is expected to show a slight reduction in overall base quality scores towards the end of each read.

Spikes in quality within reads are not expected and may indicate that technical problems occurred during sequencing.

Created with MultiQC

Base Quality Distribution

Plot shows the count of each base quality score.

Created with MultiQC

Samtools

Version:


                      
                        1.21

HTSlib:


                      
                        1.23

Toolkit for interacting with BAM/CRAM files.http://www.htslib.orgDOI: 10.1093/bioinformatics/btp352

Percent mapped

Alignment metrics from samtools stats; mapped vs. unmapped reads vs. reads mapped with MQ0.

For a set of samples that have come from the same multiplexed library, similar numbers of reads for each sample are expected. Large differences in numbers might indicate issues during the library preparation process. Whilst large differences in read numbers may be controlled for in downstream processings (e.g. read count normalisation), you may wish to consider whether the read depths achieved have fallen below recommended levels depending on the applications.

Low alignment rates could indicate contamination of samples (e.g. adapter sequences), low sequencing quality or other artefacts. These can be further investigated in the sequence level QC (e.g. from FastQC).

Reads mapped with MQ0 often indicate that the reads are ambiguously mapped to multiple locations in the reference sequence. This can be due to repetitive regions in the genome, the presence of alternative contigs in the reference, or due to reads that are too short to be uniquely mapped. These reads are often filtered out in downstream analyses.

Created with MultiQC

Alignment stats

This module parses the output from samtools stats. All numbers in millions.

Alignment statistics from samtools stats on post-dedup BAMs

Created with MultiQC

Showing ⁴⁸/₄₈ rows and ¹³/₁₃ columns.

Sample Name	Total sequences	Mapped & paired	Properly paired	Duplicated	QC Failed	Reads MQ0	Mapped bases (CIGAR)	Bases Trimmed	Duplicated bases	Diff chromosomes	Other orientation	Inward pairs	Outward pairs
659_Kh-T1-TDNA-1_A23MHWWLT4_1	1148.6M	1148.6M	1138.1M	653.0M	0.0M	38.9M	171391.6Mb	0.0Mb	97610.7Mb	4.7M	0.2M	553.0M	16.3M
659_Lx-T1-TDNA-1_A23MHWWLT4_1	0.5M	0.5M	0.5M	0.4M	0.0M	0.0M	70.6Mb	0.0Mb	50.9Mb	0.0M	0.0M	0.2M	0.0M
659_bR4-T1-TDNA-1_A23MHWWLT4_1	1626.2M	1626.2M	1615.3M	1087.7M	0.0M	55.3M	240876.5Mb	0.0Mb	161354.7Mb	4.8M	0.2M	772.1M	36.0M
659_bgw-T1-TDNA-1_A23MHWWLT4_1	1291.4M	1291.4M	1284.1M	831.9M	0.0M	49.0M	187219.2Mb	0.0Mb	120908.3Mb	3.2M	0.2M	585.4M	56.9M
659_cAd-T1-TDNA-1_A23MHWWLT4_1	1226.3M	1226.3M	1220.6M	804.3M	0.0M	40.5M	179778.8Mb	0.0Mb	118315.0Mb	2.5M	0.1M	569.8M	40.7M
659_cVw-T1-TDNA-1_A23MHWWLT4_1	1576.9M	1576.9M	1566.9M	966.0M	0.0M	55.3M	232737.4Mb	0.0Mb	142899.9Mb	4.4M	0.2M	742.0M	41.8M
659_cfy-T1-TDNA-1_A23MHWWLT4_1	1403.5M	1403.5M	1397.0M	785.6M	0.0M	52.0M	204992.9Mb	0.0Mb	115000.4Mb	2.8M	0.1M	644.7M	54.1M
659_cuO-T1-TDNA-1_A23MHWWLT4_1	176.3M	176.3M	175.2M	117.1M	0.0M	8.1M	24400.1Mb	0.0Mb	16290.0Mb	0.4M	0.0M	74.0M	13.7M
659_d0M-T1-TDNA-1_A23MHWWLT4_1	1236.2M	1236.2M	1226.8M	747.1M	0.0M	38.7M	183030.3Mb	0.0Mb	110945.3Mb	4.2M	0.2M	585.4M	28.3M
659_dm4-T1-TDNA-1_A23MHWWLT4_1	1096.6M	1096.6M	1089.0M	663.2M	0.0M	67.9M	145881.7Mb	0.0Mb	88419.9Mb	2.0M	0.3M	418.2M	127.8M
659_eKx-T1-TDNA-1_A23MHWWLT4_1	0.2M	0.2M	0.2M	0.2M	0.0M	0.0M	31.6Mb	0.0Mb	23.2Mb	0.0M	0.0M	0.1M	0.0M
1029_BCAN-T1-TDNA-1_A23MHWWLT4_1	525.1M	525.1M	516.1M	282.5M	0.0M	73.4M	60195.0Mb	0.0Mb	32785.0Mb	2.8M	0.3M	159.5M	99.9M
1029_BICJ-T1-TDNA-1_A23MHWWLT4_1	980.3M	980.3M	968.1M	541.2M	0.0M	58.0M	134965.3Mb	0.0Mb	75080.4Mb	4.3M	0.6M	395.3M	90.0M
1029_FRC-T1-TDNA-1_A23MHWWLT4_1	1419.9M	1419.9M	1402.7M	923.3M	0.0M	61.0M	205470.6Mb	0.0Mb	134130.8Mb	7.4M	0.6M	639.7M	62.2M
1029_FZX-T1-TDNA-1_A23MHWWLT4_1	1266.1M	1266.1M	1246.7M	745.2M	0.0M	50.3M	185979.1Mb	0.0Mb	109880.3Mb	8.6M	0.5M	585.8M	38.1M
1029_HTI-T1-TDNA-1_A23MHWWLT4_1	1448.6M	1448.5M	1432.4M	852.7M	0.0M	70.7M	207584.3Mb	0.0Mb	122612.5Mb	6.9M	0.5M	633.0M	83.8M
1029_I9B-T1-TDNA-1_A23MHWWLT4_1	1544.4M	1544.4M	1525.6M	976.4M	0.0M	64.6M	224777.2Mb	0.0Mb	142504.6Mb	8.3M	0.6M	703.9M	59.5M
1029_IWL-T1-TDNA-1_A23MHWWLT4_1	697.6M	697.6M	691.4M	400.4M	0.0M	48.8M	91068.6Mb	0.0Mb	52483.8Mb	1.8M	0.1M	256.3M	90.6M
1029_N5D-T1-TDNA-1_A23MHWWLT4_1	2048.1M	2048.1M	2019.7M	1294.8M	0.0M	82.6M	300133.2Mb	0.0Mb	190337.0Mb	12.6M	0.8M	946.7M	64.0M
1029_T05-T1-TDNA-1_A23MHWWLT4_1	1538.2M	1538.2M	1518.1M	1000.9M	0.0M	62.9M	224149.2Mb	0.0Mb	146137.5Mb	8.9M	0.6M	701.4M	58.2M
1047_JG-T1-TDNA-1_A23MHWWLT4_1	3083.1M	3083.0M	3068.5M	2107.8M	0.0M	126.1M	441317.5Mb	0.0Mb	302217.5Mb	6.0M	0.3M	1355.5M	179.7M
1136_00H-T1-TDNA-1_A23MHWWLT4_1	1357.1M	1357.1M	1340.6M	792.7M	0.0M	48.9M	200570.1Mb	0.0Mb	117476.3Mb	7.3M	0.4M	638.2M	32.6M
1136_3LU-T1-TDNA-1_A23MHWWLT4_1	1428.9M	1428.9M	1414.4M	872.4M	0.0M	49.3M	210937.1Mb	0.0Mb	129036.9Mb	6.2M	0.5M	672.2M	35.5M
1136_3MV-T1-TDNA-1_A23MHWWLT4_1	1247.7M	1247.6M	1233.3M	727.2M	0.0M	46.9M	183346.7Mb	0.0Mb	107149.3Mb	6.2M	0.5M	578.1M	39.0M
1136_3U6-T1-TDNA-1_A23MHWWLT4_1	1931.2M	1931.2M	1913.2M	1211.9M	0.0M	73.8M	282672.6Mb	0.0Mb	177816.9Mb	8.0M	0.5M	892.0M	65.2M
1136_3WJ-T1-TDNA-1_A23MHWWLT4_1	746.4M	746.4M	735.7M	408.6M	0.0M	40.2M	105656.9Mb	0.0Mb	58175.6Mb	4.5M	0.4M	318.8M	49.5M
1136_4GR-T1-TDNA-1_A23MHWWLT4_1	1040.2M	1040.2M	1028.4M	560.8M	0.0M	47.0M	149429.1Mb	0.0Mb	80888.9Mb	5.1M	0.4M	458.2M	56.4M
1136_4XR-T1-TDNA-1_A23MHWWLT4_1	1198.4M	1198.4M	1187.8M	671.5M	0.0M	44.7M	175857.7Mb	0.0Mb	98993.7Mb	4.6M	0.3M	555.3M	38.9M
1136_4Z5-T1-TDNA-1_A23MHWWLT4_1	1513.9M	1513.9M	1497.3M	1024.5M	0.0M	77.5M	208581.4Mb	0.0Mb	141974.5Mb	6.3M	0.6M	617.0M	133.0M
1136_4ZB-T1-TDNA-1_A23MHWWLT4_1	809.5M	809.5M	801.5M	393.3M	0.0M	37.7M	114961.9Mb	0.0Mb	56226.3Mb	3.3M	0.3M	349.9M	51.2M
1136_5KC-T1-TDNA-1_A23MHWWLT4_1	980.7M	980.7M	973.7M	478.0M	0.0M	37.9M	142729.1Mb	0.0Mb	70010.7Mb	3.0M	0.3M	449.0M	38.1M
1136_5L2-T1-TDNA-1_A23MHWWLT4_1	998.3M	998.3M	991.4M	526.7M	0.0M	34.3M	146445.2Mb	0.0Mb	77657.2Mb	3.0M	0.2M	464.5M	31.5M
1136_5Q-T1-TDNA-1_A23MHWWLT4_1	1203.7M	1203.2M	1191.8M	664.3M	0.0M	44.9M	176613.5Mb	0.0Mb	97963.9Mb	5.0M	0.3M	558.3M	38.0M
1136_5TB-T1-TDNA-1_A23MHWWLT4_1	1823.1M	1823.1M	1807.1M	1159.3M	0.0M	79.2M	262177.3Mb	0.0Mb	167106.9Mb	6.7M	0.6M	809.9M	94.3M
1136_6G2-T1-TDNA-1_A23MHWWLT4_1	1081.1M	1081.1M	1069.5M	582.1M	0.0M	48.6M	155248.4Mb	0.0Mb	83947.1Mb	4.8M	0.5M	478.1M	57.1M
1136_6TL-T1-TDNA-1_A23MHWWLT4_1	896.3M	896.3M	888.3M	493.1M	0.0M	38.7M	127972.7Mb	0.0Mb	70831.6Mb	3.3M	0.4M	393.2M	51.3M
1136_7GC-T1-TDNA-1_A23MHWWLT4_1	1525.5M	1525.5M	1511.5M	941.7M	0.0M	72.2M	216468.1Mb	0.0Mb	134144.7Mb	5.7M	0.6M	662.0M	94.4M
1136_7OW-T1-TDNA-1_A23MHWWLT4_1	1292.7M	1292.7M	1280.2M	741.8M	0.0M	49.9M	189018.1Mb	0.0Mb	108900.7Mb	5.5M	0.4M	595.8M	44.7M
1136_8DV-T1-TDNA-1_A23MHWWLT4_1	902.5M	902.5M	893.5M	517.7M	0.0M	49.4M	125287.1Mb	0.0Mb	72322.3Mb	3.4M	0.3M	373.2M	74.4M
1136_27F-T1-TDNA-1_A23MHWWLT4_1	2051.2M	2051.1M	2031.9M	1310.3M	0.0M	85.0M	294288.5Mb	0.0Mb	188332.6Mb	7.9M	0.8M	905.6M	111.2M
1136_76X-T1-TDNA-1_A23MHWWLT4_1	1081.4M	1081.4M	1068.7M	551.0M	0.0M	55.6M	154562.2Mb	0.0Mb	79198.6Mb	5.5M	0.4M	472.5M	62.3M
1136_81F-T1-TDNA-1_A23MHWWLT4_1	1170.9M	1170.8M	1155.0M	658.9M	0.0M	95.7M	151640.2Mb	0.0Mb	85710.6Mb	5.3M	0.5M	420.9M	158.8M
1136_85O-T1-TDNA-1_A23MHWWLT4_1	861.0M	861.0M	850.1M	475.6M	0.0M	38.4M	123011.0Mb	0.0Mb	68168.3Mb	4.4M	0.5M	376.1M	49.4M
1136_86S-T1-TDNA-1_A23MHWWLT4_1	1415.2M	1415.2M	1404.5M	865.4M	0.0M	57.7M	202681.5Mb	0.0Mb	124197.1Mb	4.4M	0.5M	624.4M	78.3M
1136_87O-T1-TDNA-1_A23MHWWLT4_1	1289.9M	1289.9M	1281.1M	722.6M	0.0M	56.6M	186148.3Mb	0.0Mb	104835.8Mb	3.8M	0.3M	579.8M	61.1M
1136_253-T1-TDNA-1_A23MHWWLT4_1	1291.0M	1291.0M	1272.0M	773.0M	0.0M	53.2M	189088.3Mb	0.0Mb	113372.1Mb	8.4M	0.5M	592.2M	44.4M
FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1	1256.1M	1256.0M	1244.8M	673.0M	0.0M	43.6M	186211.0Mb	0.0Mb	100063.0Mb	5.0M	0.2M	596.5M	26.3M
NTC_0002_0015_A23MHWWLT4_1	0.0M	0.0M	0.0M	0.0M	0.0M	0.0M	4.7Mb	0.0Mb	5.8Mb	0.0M	0.0M	0.0M	0.0M

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: samtools-stats-dp_table

Sort	Column	Description	ID	Scale
\|\|	Total sequences	Total sequences	`raw_total_sequences`	read_count
\|\|	Mapped & paired	Paired-end technology bit set + both mates mapped	`reads_mapped_and_paired`	read_count
\|\|	Properly paired	Proper-pair bit set	`reads_properly_paired`	read_count
\|\|	Duplicated	PCR or optical duplicate bit set	`reads_duplicated`	read_count
\|\|	QC Failed	QC Failed	`reads_QC_failed`	read_count
\|\|	Reads MQ0	Reads mapped and MQ=0	`reads_MQ0`	read_count
\|\|	Mapped bases (CIGAR)	Mapped bases (CIGAR)	`bases_mapped__cigar`	base_count
\|\|	Bases Trimmed	Bases Trimmed	`bases_trimmed`	base_count
\|\|	Duplicated bases	Duplicated bases	`bases_duplicated`	base_count
\|\|	Diff chromosomes	Pairs on different chromosomes	`pairs_on_different_chromosomes`	read_count
\|\|	Other orientation	Pairs with other orientation	`pairs_with_other_orientation`	read_count
\|\|	Inward pairs	Inward oriented pairs	`inward_oriented_pairs`	read_count
\|\|	Outward pairs	Outward oriented pairs	`outward_oriented_pairs`	read_count

fastp

Version:


                      
                        1.0.1

All-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...).https://github.com/OpenGene/fastpDOI: 10.1093/bioinformatics/bty560

Fastp goes through fastq files in a folder and perform a series of quality control and filtering. Quality control and reporting are displayed both before and after filtering, allowing for a clear depiction of the consequences of the filtering process. Notably, the latter can be conducted on a variety of parameters including quality scores, length, as well as the presence of adapters, polyG, or polyX tailing.

Pre-alignment QC and adapter trimming, run per sample

Filtered Reads

Filtering statistics of sampled reads.

Created with MultiQC

Insert Sizes

Insert size estimation of sampled reads.

Created with MultiQC

Sequence Quality

Average sequencing quality over each base of all reads.

Created with MultiQC

GC Content

Average GC content over each base of all reads.

Created with MultiQC

N content

Average N content over each base of all reads.

Created with MultiQC

Software Versions

Software Versions lists versions of software tools extracted from file contents.

Group	Software	Version
Samtools	HTSlib	`1.23`
	Samtools	`1.21`
fastp	fastp	`1.0.1`

A23MHWWLT4

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A23MHWWLT4

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General Statistics

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General Statistics: Columns

Seqtool

Basic Stats

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Depth Stats - all_targets

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Fragment Size

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GC Bias

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Mosdepth

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Average coverage per contig

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XY coverage

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Picard

Alignment Summary

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Mean read length

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Hybrid-selection metrics

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Hybrid-selection target coverage

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Insert Size

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Mean Base Quality by Cycle Help

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Base Quality Distribution

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Samtools

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Cumulative coverage distribution

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Percent mapped