File Info

Filename
control_metrics.csv
Full Path
s3://natera-rnd-pltf-dev-s3-gitlab-results/daq/build2802298/edge-cases-tissue-run/63697589/reports/control_metrics.csv
Size
2.6 KB
Workflow Run
gitlab-daq-build2802298-edge-cases-tissue-run-63697589
Published
Jun 05, 2026 7:38 PM

Content

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control_type sample_id variant_type qc_metric_name qc_value
positive_somatic FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1 cnv positive_somatic_control_cnv_amp_missed NONE
positive_somatic FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1 cnv positive_somatic_control_cnv_amp_recovered_copy_numbers MYCN=23,MET=10
positive_somatic FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1 cnv positive_somatic_control_cnv_amp_recovered_count 2
positive_somatic FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1 cnv positive_somatic_control_cnv_amp_truth_total 2
positive_somatic FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1 cnv positive_somatic_control_cnv_segment_count 287
positive_somatic FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1 mimsi positive_somatic_control_mimsi_lci 0.9999837049006565
positive_somatic FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1 mimsi positive_somatic_control_mimsi_max_msi_score 0.9999867677688599
positive_somatic FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1 mimsi positive_somatic_control_mimsi_mean_msi_score 0.9999845385551452
positive_somatic FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1 mimsi positive_somatic_control_mimsi_min_msi_score 0.9999828338623047
positive_somatic FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1 mimsi positive_somatic_control_mimsi_msi_status MSI-H
positive_somatic FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1 mimsi positive_somatic_control_mimsi_uci 0.999985372209634
positive_somatic FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1 msi positive_somatic_control_msi_total_sites 178
positive_somatic FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1 msi positive_somatic_control_msi_unstable_pct 100.00
positive_somatic FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1 msi positive_somatic_control_msi_unstable_sites 178
positive_somatic FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1 snv_indel positive_somatic_control_snv_indel_coa_missed_variants 163343;177678
positive_somatic FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1 snv_indel positive_somatic_control_snv_indel_coa_recovered_count 3
positive_somatic FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1 snv_indel positive_somatic_control_snv_indel_coa_truth_total 5
positive_somatic FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1 snv_indel positive_somatic_control_snv_indel_indel_count 5630
positive_somatic FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1 snv_indel positive_somatic_control_snv_indel_snv_count 36016
positive_somatic FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1 tmb positive_somatic_control_tmb_effective_coding_region_size 34.15
positive_somatic FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1 tmb positive_somatic_control_tmb_non_synonymous_count 10643
positive_somatic FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1 tmb positive_somatic_control_tmb_score 311.6581
23 rows