cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_3MV-T1-TDNA-1_A23MHWWLT4_1.md.bam --read_filter QualCalFilter,table=1136_3MV-T1-TDNA-1_A23MHWWLT4_1.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1136_3MV-T1-TDNA-1_A23MHWWLT4_1.table.post --algo ReadWriter 1136_3MV-T1-TDNA-1_A23MHWWLT4_1.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:188000001, elapsed 31.2s, est remaining 592.7s, peak mem 5946MB, user 739.8s, sys 8.3s, output queue size 115
progress 10% @chr2:46000001, elapsed 56.5s, est remaining 508.8s, peak mem 8668MB, user 1545.7s, sys 12.7s, output queue size 117
progress 15% @chr2:237000001, elapsed 79.9s, est remaining 452.7s, peak mem 9205MB, user 2260.2s, sys 16.5s, output queue size 203
progress 20% @chr3:129000001, elapsed 102.0s, est remaining 408.1s, peak mem 9289MB, user 2958.1s, sys 20.3s, output queue size 141
progress 25% @chr4:132000001, elapsed 122.0s, est remaining 365.9s, peak mem 9522MB, user 3567.4s, sys 22.9s, output queue size 302
progress 30% @chr5:99000001, elapsed 138.3s, est remaining 322.7s, peak mem 9689MB, user 4047.5s, sys 25.1s, output queue size 464
progress 35% @chr6:78000001, elapsed 163.1s, est remaining 302.8s, peak mem 9909MB, user 4703.6s, sys 28.1s, output queue size 625
progress 40% @chr7:64000001, elapsed 192.3s, est remaining 288.4s, peak mem 10455MB, user 5558.6s, sys 31.9s, output queue size 195
progress 45% @chr8:74000001, elapsed 222.5s, est remaining 272.0s, peak mem 10640MB, user 6426.9s, sys 35.5s, output queue size 356
progress 50% @chr9:81000001, elapsed 245.0s, est remaining 245.0s, peak mem 12615MB, user 7149.0s, sys 38.5s, output queue size 366
progress 55% @chr10:118000001, elapsed 271.7s, est remaining 222.3s, peak mem 13422MB, user 7931.5s, sys 41.4s, output queue size 348
progress 60% @chr12:1000001, elapsed 305.8s, est remaining 203.9s, peak mem 16760MB, user 8898.5s, sys 45.2s, output queue size 510
progress 65% @chr13:33000001, elapsed 331.8s, est remaining 178.7s, peak mem 16907MB, user 9765.5s, sys 48.4s, output queue size 577
progress 70% @chr14:71000001, elapsed 347.4s, est remaining 148.9s, peak mem 17959MB, user 10236.2s, sys 50.7s, output queue size 738
progress 75% @chr16:37000001, elapsed 378.7s, est remaining 126.2s, peak mem 17959MB, user 11038.2s, sys 53.7s, output queue size 900
progress 80% @chr18:10000001, elapsed 428.1s, est remaining 107.0s, peak mem 18354MB, user 12272.7s, sys 58.1s, output queue size 1062
progress 85% @chr19:57000001, elapsed 468.6s, est remaining 82.7s, peak mem 18354MB, user 13643.1s, sys 63.0s, output queue size 1224
progress 90% @chrX:30000001, elapsed 500.6s, est remaining 55.6s, peak mem 18493MB, user 14588.0s, sys 66.1s, output queue size 1386
progress 95% @chrY:54000001, elapsed 524.1s, est remaining 27.6s, peak mem 18610MB, user 15320.5s, sys 68.8s, output queue size 1548
progress 100% @chr8:127000001, elapsed 597.5s, est remaining 0.0s, peak mem 18617MB, user 16359.1s, sys 76.2s, output queue size 4972
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 66368244287
output file size: 102397340250
reads: 1256320583
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.024 real
ReadQualCal::delayed_init: 1 calls 0.002 user 0.000 sys 0.027 real
ReadQualCal::init: 1 calls 0.010 user 0.000 sys 0.006 real
advance: 3219322 calls 1446.020 user 23.800 sys 1508.194 real
done: 1 calls 0.704 user 0.217 sys 0.930 real
exec_no_coor: 1 calls 0.082 user 0.078 sys 0.185 real
execute: 1 calls 0.006 user 0.000 sys 606.543 real
fetch: 3219323 calls 81.909 user 0.542 sys 115.808 real
fetch_reads: 3219322 calls 287.736 user 1.560 sys 293.081 real
fetch_ref: 2010372 calls 7.287 user 1.203 sys 9.040 real
fetch_vcf: 2010372 calls 99.819 user 1.951 sys 104.253 real
idle: 113495 calls 44.661 user 0.748 sys 2102.161 real
init: 1 calls 0.003 user 0.000 sys 0.033 real
update: 2343863 calls 3785.282 user 3.768 sys 3932.268 real
write: 3219323 calls 12226.987 user 38.876 sys 12372.350 real
overall: 19521421312 mem 16434.370 user 106.673 sys 609.202 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before 1136_3MV-T1-TDNA-1_A23MHWWLT4_1.table --after 1136_3MV-T1-TDNA-1_A23MHWWLT4_1.table.post 1136_3MV-T1-TDNA-1_A23MHWWLT4_1.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.050 user 0.000 sys 0.042 real
done: 1 calls 0.080 user 0.000 sys 0.079 real
idle: 61 calls 0.002 user 0.000 sys 31.262 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 86806528 mem 0.108 user 0.024 sys 1.053 real