cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_86S-T1-TDNA-1_A23MHWWLT4_1.md.bam --read_filter QualCalFilter,table=1136_86S-T1-TDNA-1_A23MHWWLT4_1.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1136_86S-T1-TDNA-1_A23MHWWLT4_1.table.post --algo ReadWriter 1136_86S-T1-TDNA-1_A23MHWWLT4_1.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:153000001, elapsed 33.3s, est remaining 631.8s, peak mem 6434MB, user 842.6s, sys 7.9s, output queue size 44
progress 10% @chr2:90000001, elapsed 60.3s, est remaining 543.0s, peak mem 8217MB, user 1685.2s, sys 12.0s, output queue size 48
progress 15% @chr3:8000001, elapsed 90.6s, est remaining 513.2s, peak mem 8896MB, user 2546.3s, sys 16.4s, output queue size 122
progress 20% @chr3:174000001, elapsed 116.7s, est remaining 466.8s, peak mem 8997MB, user 3381.2s, sys 20.3s, output queue size 141
progress 25% @chr4:103000001, elapsed 140.6s, est remaining 421.8s, peak mem 9099MB, user 4135.5s, sys 23.4s, output queue size 302
progress 30% @chr5:104000001, elapsed 159.9s, est remaining 373.1s, peak mem 9355MB, user 4711.8s, sys 25.5s, output queue size 464
progress 35% @chr6:72000001, elapsed 186.6s, est remaining 346.6s, peak mem 9479MB, user 5403.4s, sys 28.1s, output queue size 625
progress 40% @chr7:56000001, elapsed 216.0s, est remaining 323.9s, peak mem 9936MB, user 6308.9s, sys 31.5s, output queue size 195
progress 45% @chr8:72000001, elapsed 246.7s, est remaining 301.5s, peak mem 9956MB, user 7264.1s, sys 34.8s, output queue size 204
progress 50% @chr9:76000001, elapsed 272.2s, est remaining 272.2s, peak mem 10282MB, user 7979.1s, sys 37.5s, output queue size 366
progress 55% @chr10:101000001, elapsed 303.0s, est remaining 247.9s, peak mem 10292MB, user 8899.0s, sys 41.0s, output queue size 348
progress 60% @chr12:1000001, elapsed 333.7s, est remaining 222.5s, peak mem 10292MB, user 9820.5s, sys 44.3s, output queue size 510
progress 65% @chr12:113000001, elapsed 364.8s, est remaining 196.4s, peak mem 10381MB, user 10768.0s, sys 47.5s, output queue size 672
progress 70% @chr14:79000001, elapsed 386.9s, est remaining 165.8s, peak mem 10484MB, user 11577.7s, sys 50.3s, output queue size 299
progress 75% @chr16:42000001, elapsed 419.8s, est remaining 139.9s, peak mem 10484MB, user 12433.9s, sys 53.5s, output queue size 461
progress 80% @chr18:9000001, elapsed 464.7s, est remaining 116.2s, peak mem 10639MB, user 13622.4s, sys 57.5s, output queue size 623
progress 85% @chr19:45000001, elapsed 499.8s, est remaining 88.2s, peak mem 10639MB, user 14949.4s, sys 61.7s, output queue size 351
progress 90% @chrX:23000001, elapsed 523.9s, est remaining 58.2s, peak mem 10680MB, user 15660.4s, sys 64.2s, output queue size 513
progress 95% @chrY:54000001, elapsed 538.8s, est remaining 28.4s, peak mem 10736MB, user 16039.4s, sys 65.8s, output queue size 675
progress 100% @chr22:23000001, elapsed 561.7s, est remaining 0.0s, peak mem 10923MB, user 16640.5s, sys 67.9s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 69197258666
output file size: 103362712420
reads: 1424902378
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.002 user 0.007 sys 0.024 real
ReadQualCal::delayed_init: 1 calls 0.007 user 0.002 sys 0.024 real
ReadQualCal::init: 1 calls 0.010 user 0.000 sys 0.006 real
advance: 3219322 calls 1568.585 user 19.995 sys 1638.687 real
done: 1 calls 0.488 user 0.410 sys 0.899 real
exec_no_coor: 1 calls 0.109 user 0.054 sys 0.176 real
execute: 1 calls 0.006 user 0.002 sys 562.675 real
fetch: 3219323 calls 88.436 user 0.429 sys 127.985 real
fetch_reads: 3219322 calls 302.512 user 1.084 sys 309.552 real
fetch_ref: 2090614 calls 7.644 user 1.225 sys 9.121 real
fetch_vcf: 2090614 calls 98.030 user 1.560 sys 104.226 real
idle: 25169 calls 9.436 user 0.213 sys 512.495 real
init: 1 calls 0.007 user 0.002 sys 0.030 real
update: 2436894 calls 3384.649 user 2.792 sys 3531.691 real
write: 3219323 calls 12409.581 user 36.048 sys 12574.134 real
overall: 11453612032 mem 16660.715 user 98.767 sys 565.134 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before 1136_86S-T1-TDNA-1_A23MHWWLT4_1.table --after 1136_86S-T1-TDNA-1_A23MHWWLT4_1.table.post 1136_86S-T1-TDNA-1_A23MHWWLT4_1.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.029 user 0.000 sys 0.042 real
done: 1 calls 0.069 user 0.011 sys 0.078 real
idle: 61 calls 0.002 user 0.000 sys 31.353 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 86794240 mem 0.097 user 0.032 sys 1.056 real