cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_3LU-T1-TDNA-1_A23MHWWLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1136_3LU-T1-TDNA-1_A23MHWWLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119513834, elapsed 9.1s, est remaining 172.9s, peak mem 5647MB, user 240.8s, sys 5.6s, output queue size 179
progress 10% @chr2:17780621, elapsed 19.1s, est remaining 171.6s, peak mem 6824MB, user 509.6s, sys 8.5s, output queue size 1153
progress 15% @chr2:185799697, elapsed 30.6s, est remaining 173.4s, peak mem 8361MB, user 824.5s, sys 12.1s, output queue size 240
progress 20% @chr3:98819202, elapsed 40.1s, est remaining 160.4s, peak mem 8361MB, user 1080.8s, sys 13.9s, output queue size 440
progress 25% @chr4:88463855, elapsed 49.0s, est remaining 146.9s, peak mem 8361MB, user 1318.2s, sys 15.7s, output queue size 87
progress 30% @chr5:147400692, elapsed 55.8s, est remaining 130.3s, peak mem 8504MB, user 1497.9s, sys 17.2s, output queue size 208
progress 35% @chr6:132401163, elapsed 66.2s, est remaining 123.0s, peak mem 8693MB, user 1775.7s, sys 19.1s, output queue size 642
progress 40% @chr7:128903727, elapsed 78.8s, est remaining 118.2s, peak mem 9563MB, user 2109.9s, sys 21.6s, output queue size 1468
progress 45% @chr9:2039101, elapsed 93.4s, est remaining 114.2s, peak mem 15041MB, user 2517.8s, sys 27.7s, output queue size 18
progress 50% @chr10:33330708, elapsed 103.5s, est remaining 103.5s, peak mem 15041MB, user 2792.2s, sys 29.7s, output queue size 108
progress 55% @chr11:48164380, elapsed 112.3s, est remaining 91.9s, peak mem 15041MB, user 3026.5s, sys 31.2s, output queue size 15
progress 60% @chr12:25017134, elapsed 122.5s, est remaining 81.7s, peak mem 15041MB, user 3301.0s, sys 33.1s, output queue size 752
progress 65% @chr13:49702386, elapsed 131.9s, est remaining 71.0s, peak mem 15041MB, user 3554.9s, sys 34.9s, output queue size 569
progress 70% @chr15:43037773, elapsed 141.3s, est remaining 60.6s, peak mem 15041MB, user 3808.2s, sys 36.4s, output queue size 455
progress 75% @chr16:30953185, elapsed 153.9s, est remaining 51.3s, peak mem 15041MB, user 4157.7s, sys 39.1s, output queue size 32
progress 80% @chr17:42698618, elapsed 166.1s, est remaining 41.5s, peak mem 15041MB, user 4491.6s, sys 41.2s, output queue size 708
progress 85% @chr19:5693552, elapsed 175.6s, est remaining 31.0s, peak mem 15041MB, user 4752.2s, sys 42.8s, output queue size 404
progress 90% @chr19:55772602, elapsed 184.5s, est remaining 20.5s, peak mem 15041MB, user 4992.6s, sys 44.3s, output queue size 90
progress 95% @chr22:36864919, elapsed 197.1s, est remaining 10.4s, peak mem 15041MB, user 5340.2s, sys 46.6s, output queue size 856
progress 100% @chr6_GL000254v2_alt:3881705, elapsed 203.5s, est remaining 0.0s, peak mem 15041MB, user 5509.1s, sys 47.9s, output queue size 1
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 77410294291
reads: 1436635500
contig: 201779 intervals 37922265 bases
advance: 208647 calls 2966.799 user 39.608 sys 3097.735 real
done: 1 calls 0.235 user 0.736 sys 0.979 real
execute: 1 calls 0.004 user 0.011 sys 203.510 real
fetch_reads: 208647 calls 237.255 user 0.706 sys 243.958 real
fetch_ref: 207423 calls 1.116 user 1.031 sys 2.170 real
fetch_vcf: 207423 calls 81.033 user 2.545 sys 85.816 real
idle: 121 calls 0.180 user 0.000 sys 63.235 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 483158 calls 2699.092 user 2.585 sys 2752.239 real
overall: 15772069888 mem 6165.823 user 49.797 sys 206.201 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory