cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_85O-T1-TDNA-1_A23MHWWLT4_1.md.bam --read_filter QualCalFilter,table=1136_85O-T1-TDNA-1_A23MHWWLT4_1.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1136_85O-T1-TDNA-1_A23MHWWLT4_1.table.post --algo ReadWriter 1136_85O-T1-TDNA-1_A23MHWWLT4_1.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:187000001, elapsed 21.9s, est remaining 415.9s, peak mem 5009MB, user 523.8s, sys 7.6s, output queue size 42
progress 10% @chr2:71000001, elapsed 41.8s, est remaining 376.4s, peak mem 6129MB, user 1150.5s, sys 11.4s, output queue size 79
progress 15% @chr2:224000001, elapsed 59.8s, est remaining 339.1s, peak mem 6464MB, user 1703.7s, sys 14.7s, output queue size 122
progress 20% @chr3:161000001, elapsed 76.1s, est remaining 304.4s, peak mem 6585MB, user 2198.2s, sys 16.9s, output queue size 141
progress 25% @chr4:136000001, elapsed 90.7s, est remaining 272.0s, peak mem 6789MB, user 2641.2s, sys 19.3s, output queue size 302
progress 30% @chr5:104000001, elapsed 102.9s, est remaining 240.1s, peak mem 6820MB, user 3030.8s, sys 21.2s, output queue size 464
progress 35% @chr6:81000001, elapsed 122.7s, est remaining 227.9s, peak mem 7133MB, user 3576.0s, sys 24.1s, output queue size 39
progress 40% @chr7:65000001, elapsed 141.1s, est remaining 211.7s, peak mem 7899MB, user 4038.2s, sys 26.3s, output queue size 197
progress 45% @chr8:70000001, elapsed 162.0s, est remaining 198.0s, peak mem 8017MB, user 4664.1s, sys 29.2s, output queue size 358
progress 50% @chr9:33000001, elapsed 177.1s, est remaining 177.1s, peak mem 8070MB, user 5210.9s, sys 31.6s, output queue size 366
progress 55% @chr10:93000001, elapsed 195.3s, est remaining 159.8s, peak mem 8090MB, user 5779.2s, sys 34.2s, output queue size 348
progress 60% @chr12:5000001, elapsed 214.0s, est remaining 142.6s, peak mem 8090MB, user 6291.0s, sys 36.6s, output queue size 510
progress 65% @chr12:106000001, elapsed 232.2s, est remaining 125.0s, peak mem 8136MB, user 6838.9s, sys 38.9s, output queue size 672
progress 70% @chr14:60000001, elapsed 243.6s, est remaining 104.4s, peak mem 8136MB, user 7277.1s, sys 40.6s, output queue size 299
progress 75% @chr16:42000001, elapsed 262.9s, est remaining 87.6s, peak mem 8136MB, user 7770.9s, sys 43.0s, output queue size 461
progress 80% @chr18:29000001, elapsed 287.8s, est remaining 71.9s, peak mem 8173MB, user 8443.1s, sys 45.8s, output queue size 623
progress 85% @chr19:49000001, elapsed 309.5s, est remaining 54.6s, peak mem 8173MB, user 9242.1s, sys 49.2s, output queue size 351
progress 90% @chrX:32000001, elapsed 324.8s, est remaining 36.1s, peak mem 8211MB, user 9690.2s, sys 51.1s, output queue size 513
progress 95% @chrY:52000001, elapsed 334.1s, est remaining 17.6s, peak mem 8211MB, user 9919.7s, sys 52.1s, output queue size 675
progress 100% @chrX:67000001, elapsed 346.9s, est remaining 0.0s, peak mem 8211MB, user 10307.0s, sys 53.9s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 45044196667
output file size: 65002022130
reads: 870183887
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.021 real
ReadQualCal::delayed_init: 1 calls 0.002 user 0.001 sys 0.024 real
ReadQualCal::init: 1 calls 0.000 user 0.000 sys 0.006 real
advance: 3219322 calls 988.086 user 14.930 sys 1041.381 real
done: 1 calls 0.401 user 0.446 sys 0.853 real
exec_no_coor: 1 calls 0.011 user 0.004 sys 0.023 real
execute: 1 calls 0.003 user 0.000 sys 347.321 real
fetch: 3219323 calls 43.462 user 0.436 sys 66.645 real
fetch_reads: 3219322 calls 165.296 user 0.699 sys 169.785 real
fetch_ref: 1967938 calls 5.727 user 1.449 sys 8.374 real
fetch_vcf: 1967938 calls 100.468 user 1.584 sys 106.106 real
idle: 11192 calls 4.855 user 0.054 sys 256.965 real
init: 1 calls 0.007 user 0.001 sys 0.030 real
update: 2176541 calls 2499.718 user 3.404 sys 2620.121 real
write: 3219323 calls 7222.408 user 26.504 sys 7315.671 real
overall: 8610799616 mem 10319.244 user 73.492 sys 349.470 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before 1136_85O-T1-TDNA-1_A23MHWWLT4_1.table --after 1136_85O-T1-TDNA-1_A23MHWWLT4_1.table.post 1136_85O-T1-TDNA-1_A23MHWWLT4_1.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.029 user 0.001 sys 0.042 real
done: 1 calls 0.078 user 0.002 sys 0.079 real
idle: 61 calls 0.002 user 0.000 sys 31.340 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 86720512 mem 0.098 user 0.029 sys 1.055 real