cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_3U6-T1-TDNA-1_A23MHWWLT4_1.md.bam --read_filter QualCalFilter,table=1136_3U6-T1-TDNA-1_A23MHWWLT4_1.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1136_3U6-T1-TDNA-1_A23MHWWLT4_1.table.post --algo ReadWriter 1136_3U6-T1-TDNA-1_A23MHWWLT4_1.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:184000001, elapsed 49.9s, est remaining 947.7s, peak mem 8303MB, user 1188.3s, sys 10.2s, output queue size 145
progress 10% @chr2:46000001, elapsed 86.3s, est remaining 777.0s, peak mem 12552MB, user 2434.1s, sys 16.1s, output queue size 48
progress 15% @chr3:8000001, elapsed 130.1s, est remaining 737.0s, peak mem 13874MB, user 3632.2s, sys 20.6s, output queue size 203
progress 20% @chr3:176000001, elapsed 167.1s, est remaining 668.5s, peak mem 13953MB, user 4828.5s, sys 26.5s, output queue size 141
progress 25% @chr4:136000001, elapsed 199.0s, est remaining 597.0s, peak mem 13953MB, user 5820.7s, sys 30.1s, output queue size 302
progress 30% @chr5:101000001, elapsed 224.4s, est remaining 523.6s, peak mem 14142MB, user 6554.5s, sys 32.8s, output queue size 464
progress 35% @chr6:79000001, elapsed 261.1s, est remaining 484.9s, peak mem 14555MB, user 7525.2s, sys 36.3s, output queue size 625
progress 40% @chr7:64000001, elapsed 302.9s, est remaining 454.4s, peak mem 15374MB, user 8740.0s, sys 40.4s, output queue size 197
progress 45% @chr8:79000001, elapsed 356.5s, est remaining 435.7s, peak mem 15848MB, user 10316.7s, sys 46.1s, output queue size 204
progress 50% @chr9:88000001, elapsed 407.6s, est remaining 407.6s, peak mem 16215MB, user 11780.8s, sys 51.0s, output queue size 366
progress 55% @chr10:118000001, elapsed 477.6s, est remaining 390.8s, peak mem 16500MB, user 13827.4s, sys 57.9s, output queue size 348
progress 60% @chr11:117000001, elapsed 558.6s, est remaining 372.4s, peak mem 16500MB, user 16139.4s, sys 66.0s, output queue size 510
progress 65% @chr9:84000001, elapsed 632.0s, est remaining 340.3s, peak mem 16562MB, user 18410.1s, sys 73.7s, output queue size 672
progress 70% @chr14:72000001, elapsed 681.3s, est remaining 292.0s, peak mem 16562MB, user 20100.7s, sys 80.1s, output queue size 299
progress 75% @chr16:42000001, elapsed 764.9s, est remaining 255.0s, peak mem 17010MB, user 22396.5s, sys 89.8s, output queue size 461
progress 80% @chr18:25000001, elapsed 881.9s, est remaining 220.5s, peak mem 17202MB, user 25530.6s, sys 102.8s, output queue size 623
progress 85% @chr20:3000001, elapsed 961.1s, est remaining 169.6s, peak mem 17202MB, user 28590.4s, sys 114.4s, output queue size 351
progress 90% @chrX:34000001, elapsed 1017.5s, est remaining 113.1s, peak mem 17202MB, user 30216.3s, sys 121.3s, output queue size 513
progress 95% @chrY:52000001, elapsed 1055.7s, est remaining 55.6s, peak mem 17213MB, user 31614.7s, sys 126.8s, output queue size 211
progress 100% @chrX:67000001, elapsed 1112.3s, est remaining 0.0s, peak mem 17213MB, user 32682.2s, sys 132.2s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 99271553910
output file size: 149214579112
reads: 1941527573
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.012 real
ReadQualCal::delayed_init: 1 calls 0.006 user 0.000 sys 0.024 real
ReadQualCal::init: 1 calls 0.008 user 0.002 sys 0.006 real
advance: 3219322 calls 3090.433 user 44.943 sys 3182.448 real
done: 1 calls 0.569 user 0.349 sys 0.925 real
exec_no_coor: 1 calls 0.174 user 0.045 sys 0.270 real
execute: 1 calls 0.008 user 0.001 sys 1113.323 real
fetch: 3219323 calls 226.500 user 0.566 sys 293.627 real
fetch_reads: 3219322 calls 702.134 user 2.035 sys 709.745 real
fetch_ref: 2158063 calls 10.060 user 1.985 sys 11.025 real
fetch_vcf: 2158063 calls 120.072 user 2.239 sys 127.567 real
idle: 77338 calls 30.404 user 0.505 sys 1158.030 real
init: 1 calls 0.006 user 0.000 sys 0.032 real
update: 2660676 calls 7252.519 user 3.856 sys 7418.363 real
write: 3219323 calls 24993.981 user 70.407 sys 25211.956 real
overall: 18049765376 mem 32739.436 user 188.580 sys 1116.191 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before 1136_3U6-T1-TDNA-1_A23MHWWLT4_1.table --after 1136_3U6-T1-TDNA-1_A23MHWWLT4_1.table.post 1136_3U6-T1-TDNA-1_A23MHWWLT4_1.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.043 user 0.000 sys 0.041 real
done: 1 calls 0.073 user 0.000 sys 0.081 real
idle: 61 calls 0.002 user 0.000 sys 31.318 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 86794240 mem 0.094 user 0.041 sys 1.062 real