File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/d7a21d61f5b35445e2a51d123884d5/.command.log
Size
1.7 KB
Task
DAQ:SAMTOOLS_MERGE (1029_BICJ-T1-TDNA-1_A23MHWWLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/56b8bf7f23ea00ce82e27d78bf188f/1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/7a5c07bfdffaf5ce3da1b17238fb2b/1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/d7a21d61f5b35445e2a51d123884d5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/c38041537d6ec9b71cc7f443cf4106/1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/bb69ebb0887716ee98179d14fbea71/1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/2811dcee55bdbedd4605a661de8584/1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/d7a21d61f5b35445e2a51d123884d5/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/b2ef13ddd77b0a8e407e2d4ffda592/1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/9dbd19073ce604330c34c6fff71d63/1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/bc43c6cfc145ac694c3f1f1ca4804b/1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.bam
==> STAGING COMPLETE (12 inputs)

ls: cannot access '*.cram': No such file or directory
ls: cannot access '*.crai': No such file or directory