cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i NTC_0002_0015_A23MHWWLT4_1.md.bam --read_filter QualCalFilter,table=NTC_0002_0015_A23MHWWLT4_1.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz NTC_0002_0015_A23MHWWLT4_1.table.post --algo ReadWriter NTC_0002_0015_A23MHWWLT4_1.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:149000001, elapsed 0.1s, est remaining 2.1s, peak mem 367MB, user 0.3s, sys 2.4s, output queue size 24
progress 10% @chr2:76000001, elapsed 0.2s, est remaining 1.8s, peak mem 523MB, user 0.6s, sys 4.8s, output queue size 41
progress 15% @chr3:12000001, elapsed 0.3s, est remaining 1.7s, peak mem 644MB, user 0.9s, sys 7.3s, output queue size 203
progress 20% @chr3:168000001, elapsed 0.4s, est remaining 1.6s, peak mem 790MB, user 1.1s, sys 9.9s, output queue size 364
progress 25% @chr4:113000001, elapsed 0.5s, est remaining 1.4s, peak mem 924MB, user 1.4s, sys 12.2s, output queue size 525
progress 30% @chr5:88000001, elapsed 0.6s, est remaining 1.3s, peak mem 985MB, user 1.6s, sys 14.5s, output queue size 687
progress 35% @chr6:64000001, elapsed 0.6s, est remaining 1.2s, peak mem 1096MB, user 2.1s, sys 16.9s, output queue size 22
progress 40% @chr7:55000001, elapsed 0.7s, est remaining 1.1s, peak mem 1177MB, user 2.3s, sys 19.2s, output queue size 12
progress 45% @chr8:57000001, elapsed 0.8s, est remaining 1.0s, peak mem 1228MB, user 2.5s, sys 21.5s, output queue size 11
progress 50% @chr9:71000001, elapsed 0.9s, est remaining 0.9s, peak mem 1309MB, user 2.7s, sys 23.9s, output queue size 3
progress 55% @chr10:90000001, elapsed 1.0s, est remaining 0.8s, peak mem 1419MB, user 2.9s, sys 26.3s, output queue size 15
progress 60% @chr11:119000001, elapsed 1.0s, est remaining 0.7s, peak mem 1503MB, user 3.1s, sys 28.5s, output queue size 15
progress 65% @chr13:5000001, elapsed 1.1s, est remaining 0.6s, peak mem 1551MB, user 3.4s, sys 30.7s, output queue size 10
progress 70% @chr14:56000001, elapsed 1.2s, est remaining 0.5s, peak mem 1561MB, user 3.6s, sys 32.8s, output queue size 19
progress 75% @chr16:2000001, elapsed 1.3s, est remaining 0.4s, peak mem 1692MB, user 3.9s, sys 35.1s, output queue size 11
progress 80% @chr18:19000001, elapsed 1.4s, est remaining 0.3s, peak mem 1756MB, user 4.0s, sys 37.4s, output queue size 9
progress 85% @chr20:41000001, elapsed 1.4s, est remaining 0.3s, peak mem 1785MB, user 4.2s, sys 39.6s, output queue size 6
progress 90% @chrX:16000001, elapsed 1.5s, est remaining 0.2s, peak mem 1842MB, user 4.5s, sys 41.8s, output queue size 22
progress 95% @chrX:143000001, elapsed 1.6s, est remaining 0.1s, peak mem 1872MB, user 4.8s, sys 44.1s, output queue size 40
progress 100% @chrUn_JTFH01001905v1_decoy:1, elapsed 1.7s, est remaining 0.0s, peak mem 1969MB, user 5.1s, sys 46.8s, output queue size 2597
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 2828557
output file size: 1708649
reads: 42902
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.010 real
ReadQualCal::delayed_init: 1 calls 0.007 user 0.000 sys 0.024 real
ReadQualCal::init: 1 calls 0.000 user 0.000 sys 0.004 real
advance: 3219322 calls 0.431 user 5.650 sys 6.228 real
done: 1 calls 0.194 user 0.101 sys 0.297 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.007 user 0.001 sys 1.765 real
fetch: 3219323 calls 0.162 user 5.827 sys 5.789 real
fetch_reads: 3219322 calls 0.188 user 5.698 sys 5.797 real
fetch_ref: 269 calls 0.001 user 0.018 sys 0.006 real
fetch_vcf: 269 calls 0.190 user 0.056 sys 0.217 real
idle: 87 calls 0.019 user 0.021 sys 31.297 real
init: 1 calls 0.007 user 0.000 sys 0.030 real
update: 270 calls 0.377 user 0.616 sys 0.944 real
write: 3219323 calls 0.476 user 5.659 sys 6.100 real
overall: 2065391616 mem 5.830 user 47.772 sys 3.153 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before NTC_0002_0015_A23MHWWLT4_1.table --after NTC_0002_0015_A23MHWWLT4_1.table.post NTC_0002_0015_A23MHWWLT4_1.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.009 user 0.001 sys 0.007 real
done: 1 calls 0.020 user 0.010 sys 0.030 real
idle: 61 calls 0.002 user 0.000 sys 31.393 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 78856192 mem 0.050 user 0.029 sys 1.060 real