File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/efa91fc1793af7e19448772a3cc5c1/output/Logs/Info.log
Size
4.2 KB
Attempt
2026-06-05T20:43:20Z thread 506 Sample sheet being processed by common lib? Yes
2026-06-05T20:43:20Z thread 506 SampleSheet Settings: 
2026-06-05T20:43:20Z thread 506   FastqCompressionFormat = gzip
2026-06-05T20:43:20Z thread 506   NoLaneSplitting = FALSE
2026-06-05T20:43:20Z thread 506   OverrideCycles = Y151;I10;I10;Y151
2026-06-05T20:43:20Z thread 506   SoftwareVersion = 4.3.6
2026-06-05T20:43:20Z thread 506 
2026-06-05T20:43:20Z thread 506 Index Read 2 (i5): The barcode and UMI outputs will be processed and output in Reverse Complement of Sample Sheet inputs. OverrideCycles bases for this read will be interpreted in reverse.
2026-06-05T20:43:20Z thread 506 shared-thread-linux-native-asio output is disabled
2026-06-05T20:43:20Z thread 506 bcl-convert Version 4.4.6
2026-06-05T20:43:20Z thread 506 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-05T20:43:20Z thread 506 Command Line: --tiles s_8 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-05T20:43:20Z thread 506 Conversion Begins.
2026-06-05T20:43:20Z thread 506 Input BCL Information:
2026-06-05T20:43:20Z thread 506     Read Structure: 2026-06-05T20:43:20Z thread 506 Y1512026-06-05T20:43:20Z thread 506 ;2026-06-05T20:43:20Z thread 506 I102026-06-05T20:43:20Z thread 506 ;2026-06-05T20:43:20Z thread 506 I102026-06-05T20:43:20Z thread 506 ;2026-06-05T20:43:20Z thread 506 Y1512026-06-05T20:43:20Z thread 506 
2026-06-05T20:43:20Z thread 506     RunInfo.xml file lists: 8 lanes, 6272 tiles
2026-06-05T20:43:20Z thread 506     BCL file format: cbcl
2026-06-05T20:43:20Z thread 506     Positions file format: slocs
2026-06-05T20:43:20Z thread 506     Filter file format: filter
2026-06-05T20:43:20Z thread 506 Conversion Information:
2026-06-05T20:43:20Z thread 506     Tile filtering: converting 784/6272 tiles
2026-06-05T20:43:20Z thread 506     Sample Count for Lane 1: 48
2026-06-05T20:43:20Z thread 506     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-05T20:43:20Z thread 506     Sample Count for Lane 2: 48
2026-06-05T20:43:20Z thread 506     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-05T20:43:20Z thread 506     Sample Count for Lane 3: 48
2026-06-05T20:43:20Z thread 506     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-05T20:43:20Z thread 506     Sample Count for Lane 4: 48
2026-06-05T20:43:20Z thread 506     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-05T20:43:20Z thread 506     Sample Count for Lane 5: 48
2026-06-05T20:43:20Z thread 506     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-05T20:43:20Z thread 506     Sample Count for Lane 6: 48
2026-06-05T20:43:20Z thread 506     Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-05T20:43:20Z thread 506     Sample Count for Lane 7: 48
2026-06-05T20:43:20Z thread 506     Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-05T20:43:20Z thread 506     Sample Count for Lane 8: 48
2026-06-05T20:43:20Z thread 506     Expected number of sample FASTQ files to be created: 96
2026-06-05T20:43:20Z thread 506 # CPU hw threads available: 64
2026-06-05T20:43:21Z thread 506 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-05T20:43:21Z thread 506 SW compressors: 64
2026-06-05T20:43:21Z thread 506 SW decompressors: 32
2026-06-05T20:43:21Z thread 506 SW FASTQ compression level: 1
2026-06-05T21:12:27Z thread 506 Lane 8 Post-run Information:
2026-06-05T21:12:27Z thread 506     Total clusters: 3880042627
2026-06-05T21:12:27Z thread 506     Total Genomic Reads: 7760085254
2026-06-05T21:12:27Z thread 506     Total Genomic Input Gigabases 1171.77
2026-06-05T21:12:27Z thread 506     Minimum reads for a sample: 11992
2026-06-05T21:12:27Z thread 506     Maximum reads for a sample: 393264828
2026-06-05T21:12:27Z thread 506     Average reads per sample: 155465455.83
2026-06-05T21:12:27Z thread 506     Undetermined reads: 297743374
2026-06-05T21:12:28Z thread 506 Conversion Complete.