File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/f84eba6a5f4c3a4aae55389938a66b/.command.err
Size
1.8 KB
Attempt
Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA

Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

Read1 before filtering:
total reads: 96115276
total bases: 14513406676
Q20 bases: 14062545398(96.8935%)
Q30 bases: 13233703873(91.1826%)
Q40 bases: 13233703873(91.1826%)

Read2 before filtering:
total reads: 96115276
total bases: 14513406676
Q20 bases: 13764507896(94.84%)
Q30 bases: 12516267876(86.2394%)
Q40 bases: 12516267876(86.2394%)

Read1 after filtering:
total reads: 94309226
total bases: 13701486327
Q20 bases: 13348857087(97.4263%)
Q30 bases: 12614081827(92.0636%)
Q40 bases: 12614081827(92.0636%)

Read2 after filtering:
total reads: 94309226
total bases: 13702752923
Q20 bases: 13127545651(95.8023%)
Q30 bases: 12036581339(87.8406%)
Q40 bases: 12036581339(87.8406%)

Filtering result:
reads passed filter: 188618452
reads failed due to low quality: 3598906
reads failed due to too many N: 9600
reads failed due to too short: 3594
reads with adapter trimmed: 29870233
bases trimmed due to adapters: 1081483853

Duplication rate: 10.4583%

Insert size peak (evaluated by paired-end reads): 176

JSON report: 1029_I9B-T1-TDNA-1_A23MHWWLT4_1.fastp.json
HTML report: 1029_I9B-T1-TDNA-1_A23MHWWLT4_1.fastp.html

fastp --in1 1029_I9B-T1-TDNA-1_A23MHWWLT4_1_S27_L005_R1_001.fastq.gz --in2 1029_I9B-T1-TDNA-1_A23MHWWLT4_1_S27_L005_R2_001.fastq.gz --out1 1029_I9B-T1-TDNA-1_A23MHWWLT4_1/1029_I9B-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz --out2 1029_I9B-T1-TDNA-1_A23MHWWLT4_1/1029_I9B-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json 1029_I9B-T1-TDNA-1_A23MHWWLT4_1.fastp.json --html 1029_I9B-T1-TDNA-1_A23MHWWLT4_1.fastp.html --thread 4 
fastp v1.0.1, time used: 1063 seconds