File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/42de0624fae370eb307057501615b1/.command.err
Size
3.7 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_IWL-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_coding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_IWL-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:109000001, elapsed 2.3s, est remaining 43.2s, peak mem 1476MB, user 55.5s, sys 1.2s, output queue size 145
progress 10% @chr2:90000001, elapsed 4.0s, est remaining 35.9s, peak mem 1752MB, user 111.4s, sys 2.0s, output queue size 48
progress 15% @chr2:237000001, elapsed 5.9s, est remaining 33.5s, peak mem 2206MB, user 169.1s, sys 3.0s, output queue size 122
progress 20% @chr3:155000001, elapsed 7.7s, est remaining 30.7s, peak mem 2294MB, user 221.8s, sys 3.8s, output queue size 141
progress 25% @chr4:132000001, elapsed 9.2s, est remaining 27.7s, peak mem 2364MB, user 270.3s, sys 4.4s, output queue size 302
progress 30% @chr5:56000001, elapsed 10.5s, est remaining 24.5s, peak mem 2429MB, user 308.6s, sys 4.7s, output queue size 464
progress 35% @chr6:74000001, elapsed 12.2s, est remaining 22.7s, peak mem 2507MB, user 361.7s, sys 5.2s, output queue size 106
progress 40% @chr7:63000001, elapsed 14.0s, est remaining 21.0s, peak mem 2581MB, user 414.3s, sys 5.7s, output queue size 194
progress 45% @chr8:74000001, elapsed 16.0s, est remaining 19.6s, peak mem 2654MB, user 470.8s, sys 6.1s, output queue size 204
progress 50% @chr9:88000001, elapsed 17.7s, est remaining 17.7s, peak mem 2722MB, user 520.1s, sys 6.5s, output queue size 366
progress 55% @chr10:104000001, elapsed 19.7s, est remaining 16.1s, peak mem 2765MB, user 582.0s, sys 7.0s, output queue size 348
progress 60% @chr11:121000001, elapsed 21.8s, est remaining 14.5s, peak mem 2776MB, user 644.1s, sys 7.4s, output queue size 510
progress 65% @chr13:31000001, elapsed 23.6s, est remaining 12.7s, peak mem 2805MB, user 711.9s, sys 7.9s, output queue size 138
progress 70% @chr14:60000001, elapsed 24.9s, est remaining 10.7s, peak mem 2805MB, user 749.5s, sys 8.2s, output queue size 299
progress 75% @chr16:41000001, elapsed 27.0s, est remaining 9.0s, peak mem 2805MB, user 806.3s, sys 8.6s, output queue size 461
progress 80% @chr17:50000001, elapsed 30.1s, est remaining 7.5s, peak mem 2867MB, user 899.7s, sys 9.0s, output queue size 189
progress 85% @chr19:15000001, elapsed 32.8s, est remaining 5.8s, peak mem 2867MB, user 994.1s, sys 9.5s, output queue size 73
progress 90% @chrX:35000001, elapsed 34.5s, est remaining 3.8s, peak mem 2867MB, user 1046.9s, sys 9.9s, output queue size 78
progress 95% @chrY:52000001, elapsed 35.6s, est remaining 1.9s, peak mem 2884MB, user 1079.8s, sys 10.3s, output queue size 240
progress 100% @chr22:23000001, elapsed 38.1s, est remaining 0.0s, peak mem 2884MB, user 1108.8s, sys 10.5s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 34430769148
reads: 702845646
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 553.404 user 8.791 sys 563.427 real
done: 1 calls 0.003 user 0.013 sys 0.022 real
exec_no_coor: 1 calls 0.008 user 0.008 sys 0.023 real
execute: 1 calls 0.000 user 0.001 sys 38.104 real
idle: 129 calls 0.153 user 0.000 sys 91.197 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 3024093184 mem 1109.830 user 10.717 sys 39.318 real