File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/5945710a15205d1133b429b14e3e65/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_noncoding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:173000001, elapsed 3.9s, est remaining 74.7s, peak mem 3727MB, user 87.8s, sys 3.2s, output queue size 146
progress 10% @chr2:58000001, elapsed 7.3s, est remaining 65.7s, peak mem 5130MB, user 188.2s, sys 4.8s, output queue size 166
progress 15% @chr3:18000001, elapsed 10.7s, est remaining 60.6s, peak mem 7506MB, user 276.8s, sys 6.2s, output queue size 220
progress 20% @chr3:155000001, elapsed 13.5s, est remaining 54.1s, peak mem 9040MB, user 374.8s, sys 7.4s, output queue size 364
progress 25% @chr4:137000001, elapsed 16.1s, est remaining 48.3s, peak mem 9481MB, user 457.5s, sys 8.5s, output queue size 525
progress 30% @chr5:97000001, elapsed 18.0s, est remaining 41.9s, peak mem 9481MB, user 513.6s, sys 11.0s, output queue size 464
progress 35% @chr6:86000001, elapsed 21.0s, est remaining 39.1s, peak mem 9792MB, user 596.5s, sys 11.8s, output queue size 625
progress 40% @chr7:79000001, elapsed 24.6s, est remaining 36.9s, peak mem 10258MB, user 690.7s, sys 12.8s, output queue size 786
progress 45% @chr8:78000001, elapsed 29.0s, est remaining 35.5s, peak mem 10661MB, user 814.4s, sys 13.7s, output queue size 948
progress 50% @chr9:81000001, elapsed 32.5s, est remaining 32.5s, peak mem 11367MB, user 929.8s, sys 14.7s, output queue size 366
progress 55% @chr10:120000001, elapsed 36.4s, est remaining 29.8s, peak mem 11705MB, user 1037.2s, sys 15.7s, output queue size 527
progress 60% @chr11:65000001, elapsed 40.6s, est remaining 27.0s, peak mem 11705MB, user 1180.6s, sys 16.7s, output queue size 510
progress 65% @chr10:121000001, elapsed 44.4s, est remaining 23.9s, peak mem 11705MB, user 1294.8s, sys 17.8s, output queue size 672
progress 70% @chr14:85000001, elapsed 46.5s, est remaining 19.9s, peak mem 11705MB, user 1357.0s, sys 18.2s, output queue size 833
progress 75% @chr16:41000001, elapsed 51.0s, est remaining 17.0s, peak mem 11705MB, user 1506.6s, sys 19.0s, output queue size 461
progress 80% @chr18:29000001, elapsed 57.8s, est remaining 14.4s, peak mem 11705MB, user 1672.7s, sys 20.1s, output queue size 623
progress 85% @chr20:9000001, elapsed 65.4s, est remaining 11.5s, peak mem 11705MB, user 1902.7s, sys 22.1s, output queue size 785
progress 90% @chrX:30000001, elapsed 68.8s, est remaining 7.6s, peak mem 11738MB, user 2037.0s, sys 23.2s, output queue size 947
progress 95% @chrY:55000001, elapsed 71.1s, est remaining 3.7s, peak mem 11764MB, user 2120.1s, sys 23.8s, output queue size 675
progress 100% @chr22:23000001, elapsed 81.1s, est remaining 0.0s, peak mem 11805MB, user 2240.3s, sys 24.3s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 68397013038
reads: 1261745363
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1052.520 user 21.386 sys 1073.526 real
done: 1 calls 0.017 user 0.037 sys 0.059 real
exec_no_coor: 1 calls 0.010 user 0.000 sys 0.019 real
execute: 1 calls 0.007 user 0.003 sys 81.078 real
idle: 299 calls 0.162 user 0.011 sys 277.334 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 12378546176 mem 2241.447 user 24.596 sys 82.408 real