File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/db5cb9c0cd562ae42ec2a9314f8925/.command.err
Size
1.8 KB
Attempt
Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA

Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

Read1 before filtering:
total reads: 98175428
total bases: 14824489628
Q20 bases: 14379896984(97.001%)
Q30 bases: 13527310680(91.2498%)
Q40 bases: 13527310680(91.2498%)

Read2 before filtering:
total reads: 98175428
total bases: 14824489628
Q20 bases: 14007824819(94.4911%)
Q30 bases: 12661946865(85.4124%)
Q40 bases: 12661946865(85.4124%)

Read1 after filtering:
total reads: 96096667
total bases: 14152634293
Q20 bases: 13788519598(97.4272%)
Q30 bases: 13020841400(92.003%)
Q40 bases: 13020841400(92.003%)

Read2 after filtering:
total reads: 96096667
total bases: 14153519474
Q20 bases: 13516629641(95.5001%)
Q30 bases: 12319864175(87.0445%)
Q40 bases: 12319864175(87.0445%)

Filtering result:
reads passed filter: 192193334
reads failed due to low quality: 4146050
reads failed due to too many N: 9212
reads failed due to too short: 2260
reads with adapter trimmed: 21029444
bases trimmed due to adapters: 717995902

Duplication rate: 11.6081%

Insert size peak (evaluated by paired-end reads): 193

JSON report: 659_cVw-T1-TDNA-1_A23MHWWLT4_1.fastp.json
HTML report: 659_cVw-T1-TDNA-1_A23MHWWLT4_1.fastp.html

fastp --in1 659_cVw-T1-TDNA-1_A23MHWWLT4_1_S39_L005_R1_001.fastq.gz --in2 659_cVw-T1-TDNA-1_A23MHWWLT4_1_S39_L005_R2_001.fastq.gz --out1 659_cVw-T1-TDNA-1_A23MHWWLT4_1/659_cVw-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz --out2 659_cVw-T1-TDNA-1_A23MHWWLT4_1/659_cVw-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json 659_cVw-T1-TDNA-1_A23MHWWLT4_1.fastp.json --html 659_cVw-T1-TDNA-1_A23MHWWLT4_1.fastp.html --thread 4 
fastp v1.0.1, time used: 1214 seconds