File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/69c79be78d79d7629648f98f965e7e/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_5Q-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/FINAL_hotspot_list_07302025_hg38_sorted.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_5Q-T1-TDNA-1_A23MHWWLT4_1_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:160000001, elapsed 3.9s, est remaining 74.2s, peak mem 3448MB, user 86.9s, sys 4.2s, output queue size 146
progress 10% @chr2:80000001, elapsed 6.8s, est remaining 60.8s, peak mem 4199MB, user 183.1s, sys 6.8s, output queue size 96
progress 15% @chr2:201000001, elapsed 9.9s, est remaining 56.0s, peak mem 6135MB, user 275.6s, sys 8.5s, output queue size 203
progress 20% @chr3:176000001, elapsed 13.1s, est remaining 52.6s, peak mem 6356MB, user 373.3s, sys 10.8s, output queue size 141
progress 25% @chr4:124000001, elapsed 16.0s, est remaining 47.9s, peak mem 6565MB, user 456.7s, sys 11.8s, output queue size 302
progress 30% @chr5:100000001, elapsed 17.7s, est remaining 41.4s, peak mem 6696MB, user 513.4s, sys 12.3s, output queue size 464
progress 35% @chr6:91000001, elapsed 20.4s, est remaining 37.9s, peak mem 6731MB, user 596.0s, sys 13.0s, output queue size 115
progress 40% @chr7:47000001, elapsed 23.3s, est remaining 34.9s, peak mem 7467MB, user 677.1s, sys 13.8s, output queue size 195
progress 45% @chr8:70000001, elapsed 26.7s, est remaining 32.6s, peak mem 7978MB, user 771.9s, sys 15.0s, output queue size 356
progress 50% @chr9:88000001, elapsed 30.4s, est remaining 30.4s, peak mem 8189MB, user 885.0s, sys 16.4s, output queue size 324
progress 55% @chr10:86000001, elapsed 33.8s, est remaining 27.7s, peak mem 8902MB, user 982.7s, sys 17.2s, output queue size 348
progress 60% @chr11:134000001, elapsed 36.8s, est remaining 24.6s, peak mem 8902MB, user 1086.0s, sys 18.3s, output queue size 504
progress 65% @chr13:35000001, elapsed 39.9s, est remaining 21.5s, peak mem 8902MB, user 1168.7s, sys 19.0s, output queue size 666
progress 70% @chr14:69000001, elapsed 41.7s, est remaining 17.9s, peak mem 8902MB, user 1218.2s, sys 19.6s, output queue size 827
progress 75% @chr16:42000001, elapsed 45.3s, est remaining 15.1s, peak mem 8910MB, user 1307.4s, sys 20.3s, output queue size 989
progress 80% @chr17:31000001, elapsed 50.1s, est remaining 12.5s, peak mem 8948MB, user 1477.4s, sys 21.7s, output queue size 623
progress 85% @chr19:45000001, elapsed 54.9s, est remaining 9.7s, peak mem 8948MB, user 1623.9s, sys 22.7s, output queue size 785
progress 90% @chrX:34000001, elapsed 57.5s, est remaining 6.4s, peak mem 8948MB, user 1704.8s, sys 23.3s, output queue size 947
progress 95% @chrY:55000001, elapsed 59.2s, est remaining 3.1s, peak mem 8948MB, user 1769.3s, sys 23.9s, output queue size 675
progress 100% @chr22:23000001, elapsed 64.9s, est remaining 0.0s, peak mem 8948MB, user 1851.0s, sys 24.6s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 62212255172
reads: 1210780814
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 967.553 user 21.881 sys 990.982 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
exec_no_coor: 1 calls 0.526 user 0.228 sys 0.766 real
execute: 1 calls 0.004 user 0.002 sys 64.909 real
idle: 189 calls 0.144 user 0.001 sys 165.960 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 9383047168 mem 1851.826 user 25.014 sys 66.349 real