File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/1ba8f37ca6f1b6f0a5c99114f29023/.command.err
Size
1.8 KB
Attempt
Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA

Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

Read1 before filtering:
total reads: 91424324
total bases: 13805072924
Q20 bases: 13470492408(97.5764%)
Q30 bases: 12835637469(92.9777%)
Q40 bases: 12835637469(92.9777%)

Read2 before filtering:
total reads: 91424324
total bases: 13805072924
Q20 bases: 13310306478(96.4161%)
Q30 bases: 12454827232(90.2192%)
Q40 bases: 12454827232(90.2192%)

Read1 after filtering:
total reads: 90456386
total bases: 12951419449
Q20 bases: 12694093587(98.0131%)
Q30 bases: 12139657624(93.7323%)
Q40 bases: 12139657624(93.7323%)

Read2 after filtering:
total reads: 90456386
total bases: 12952861566
Q20 bases: 12579346136(97.1163%)
Q30 bases: 11842138862(91.4249%)
Q40 bases: 11842138862(91.4249%)

Filtering result:
reads passed filter: 180912772
reads failed due to low quality: 1918120
reads failed due to too many N: 15848
reads failed due to too short: 1908
reads with adapter trimmed: 41185476
bases trimmed due to adapters: 1418476152

Duplication rate: 10.8768%

Insert size peak (evaluated by paired-end reads): 151

JSON report: 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.fastp.json
HTML report: 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.fastp.html

fastp --in1 1029_HTI-T1-TDNA-1_A23MHWWLT4_1_S23_L007_R1_001.fastq.gz --in2 1029_HTI-T1-TDNA-1_A23MHWWLT4_1_S23_L007_R2_001.fastq.gz --out1 1029_HTI-T1-TDNA-1_A23MHWWLT4_1/1029_HTI-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz --out2 1029_HTI-T1-TDNA-1_A23MHWWLT4_1/1029_HTI-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.fastp.json --html 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.fastp.html --thread 4 
fastp v1.0.1, time used: 1002 seconds