File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/8b842b9ae7faa8ab21ed7abb7a887f/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_FZX-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/FINAL_hotspot_list_07302025_hg38_sorted.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_FZX-T1-TDNA-1_A23MHWWLT4_1_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:169000001, elapsed 3.5s, est remaining 65.8s, peak mem 3132MB, user 79.2s, sys 2.1s, output queue size 146
progress 10% @chr2:90000001, elapsed 6.6s, est remaining 59.1s, peak mem 4149MB, user 178.2s, sys 3.8s, output queue size 68
progress 15% @chr2:177000001, elapsed 10.8s, est remaining 61.3s, peak mem 7203MB, user 293.9s, sys 7.5s, output queue size 203
progress 20% @chr3:174000001, elapsed 14.0s, est remaining 56.1s, peak mem 7852MB, user 387.8s, sys 9.6s, output queue size 364
progress 25% @chr4:129000001, elapsed 16.3s, est remaining 48.8s, peak mem 7998MB, user 471.0s, sys 12.5s, output queue size 302
progress 30% @chr4:184000001, elapsed 18.1s, est remaining 42.3s, peak mem 8064MB, user 525.2s, sys 13.1s, output queue size 464
progress 35% @chr6:81000001, elapsed 21.1s, est remaining 39.2s, peak mem 8297MB, user 605.4s, sys 14.3s, output queue size 625
progress 40% @chr7:65000001, elapsed 24.5s, est remaining 36.7s, peak mem 8571MB, user 695.9s, sys 15.7s, output queue size 786
progress 45% @chr8:78000001, elapsed 28.1s, est remaining 34.4s, peak mem 8933MB, user 819.3s, sys 17.0s, output queue size 204
progress 50% @chr8:143000001, elapsed 31.4s, est remaining 31.4s, peak mem 9133MB, user 906.3s, sys 17.9s, output queue size 366
progress 55% @chr10:73000001, elapsed 34.9s, est remaining 28.6s, peak mem 9454MB, user 1025.0s, sys 19.1s, output queue size 348
progress 60% @chr11:101000001, elapsed 38.1s, est remaining 25.4s, peak mem 9454MB, user 1111.5s, sys 19.8s, output queue size 510
progress 65% @chr12:123000001, elapsed 42.2s, est remaining 22.7s, peak mem 9454MB, user 1227.4s, sys 20.8s, output queue size 672
progress 70% @chr14:71000001, elapsed 44.4s, est remaining 19.0s, peak mem 9454MB, user 1307.8s, sys 21.5s, output queue size 635
progress 75% @chr16:42000001, elapsed 48.0s, est remaining 16.0s, peak mem 9454MB, user 1421.8s, sys 22.6s, output queue size 461
progress 80% @chr18:29000001, elapsed 53.8s, est remaining 13.5s, peak mem 9454MB, user 1571.3s, sys 24.0s, output queue size 623
progress 85% @chr20:3000001, elapsed 59.3s, est remaining 10.5s, peak mem 9454MB, user 1751.8s, sys 25.3s, output queue size 785
progress 90% @chr22:39000001, elapsed 63.0s, est remaining 7.0s, peak mem 9454MB, user 1847.3s, sys 26.0s, output queue size 947
progress 95% @chrY:54000001, elapsed 65.3s, est remaining 3.4s, peak mem 9454MB, user 1945.7s, sys 27.3s, output queue size 675
progress 100% @chr22:23000001, elapsed 74.1s, est remaining 0.0s, peak mem 9454MB, user 2046.2s, sys 28.4s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 67770633046
reads: 1275212856
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1045.013 user 24.327 sys 1072.179 real
done: 1 calls 0.000 user 0.000 sys 0.003 real
exec_no_coor: 1 calls 0.007 user 0.000 sys 0.009 real
execute: 1 calls 0.000 user 0.002 sys 74.065 real
idle: 276 calls 0.164 user 0.002 sys 250.531 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 9914212352 mem 2047.142 user 28.747 sys 75.460 real