File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/45c4381b9303ffdbc82010ef564e74/.command.err
Size
1.8 KB
Attempt
Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA

Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

Read1 before filtering:
total reads: 89438182
total bases: 13505165482
Q20 bases: 13167026974(97.4962%)
Q30 bases: 12545307283(92.8927%)
Q40 bases: 12545307283(92.8927%)

Read2 before filtering:
total reads: 89438182
total bases: 13505165482
Q20 bases: 12923926680(95.6962%)
Q30 bases: 11940527157(88.4145%)
Q40 bases: 11940527157(88.4145%)

Read1 after filtering:
total reads: 88122675
total bases: 12733921627
Q20 bases: 12483233046(98.0313%)
Q30 bases: 11937562290(93.7462%)
Q40 bases: 11937562290(93.7462%)

Read2 after filtering:
total reads: 88122675
total bases: 12735116192
Q20 bases: 12295100186(96.5449%)
Q30 bases: 11439791882(89.8287%)
Q40 bases: 11439791882(89.8287%)

Filtering result:
reads passed filter: 176245350
reads failed due to low quality: 2615230
reads failed due to too many N: 11310
reads failed due to too short: 4474
reads with adapter trimmed: 31000739
bases trimmed due to adapters: 1148204452

Duplication rate: 13.1587%

Insert size peak (evaluated by paired-end reads): 167

JSON report: 1029_FRC-T1-TDNA-1_A23MHWWLT4_1.fastp.json
HTML report: 1029_FRC-T1-TDNA-1_A23MHWWLT4_1.fastp.html

fastp --in1 1029_FRC-T1-TDNA-1_A23MHWWLT4_1_S35_L003_R1_001.fastq.gz --in2 1029_FRC-T1-TDNA-1_A23MHWWLT4_1_S35_L003_R2_001.fastq.gz --out1 1029_FRC-T1-TDNA-1_A23MHWWLT4_1/1029_FRC-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz --out2 1029_FRC-T1-TDNA-1_A23MHWWLT4_1/1029_FRC-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json 1029_FRC-T1-TDNA-1_A23MHWWLT4_1.fastp.json --html 1029_FRC-T1-TDNA-1_A23MHWWLT4_1.fastp.html --thread 4 
fastp v1.0.1, time used: 997 seconds