Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA
Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT
Read1 before filtering:
total reads: 33073850
total bases: 4994151350
Q20 bases: 4746496318(95.0411%)
Q30 bases: 4493960434(89.9845%)
Q40 bases: 4493960434(89.9845%)
Read2 before filtering:
total reads: 33073850
total bases: 4994151350
Q20 bases: 4801048959(96.1334%)
Q30 bases: 4532388602(90.7539%)
Q40 bases: 4532388602(90.7539%)
Read1 after filtering:
total reads: 32751909
total bases: 3778737018
Q20 bases: 3717540819(98.3805%)
Q30 bases: 3588085593(94.9546%)
Q40 bases: 3588085593(94.9546%)
Read2 after filtering:
total reads: 32751909
total bases: 3781157369
Q20 bases: 3717317282(98.3116%)
Q30 bases: 3593709418(95.0426%)
Q40 bases: 3593709418(95.0426%)
Filtering result:
reads passed filter: 65503818
reads failed due to low quality: 634960
reads failed due to too many N: 5610
reads failed due to too short: 3312
reads with adapter trimmed: 49426442
bases trimmed due to adapters: 2339911556
Duplication rate: 5.8928%
Insert size peak (evaluated by paired-end reads): 96
JSON report: 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.fastp.json
HTML report: 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.fastp.html
fastp --in1 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1_S29_L007_R1_001.fastq.gz --in2 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1_S29_L007_R2_001.fastq.gz --out1 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1/1029_BCAN-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz --out2 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1/1029_BCAN-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.fastp.json --html 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.fastp.html --thread 4
fastp v1.0.1, time used: 290 seconds