Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/dd56d0167203bdd4bae1e935f06d58/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_coding_postQC_hg38.bed
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/17fccdf819f8ec4c552cea4ecfb06f/1136_7OW-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/dd56d0167203bdd4bae1e935f06d58/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/17fccdf819f8ec4c552cea4ecfb06f/1136_7OW-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_7OW-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_coding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_7OW-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:153000001, elapsed 4.2s, est remaining 79.5s, peak mem 3580MB, user 97.9s, sys 2.7s, output queue size 146
progress 10% @chr2:84000001, elapsed 7.7s, est remaining 69.1s, peak mem 4471MB, user 208.4s, sys 4.7s, output queue size 117
progress 15% @chr2:224000001, elapsed 11.4s, est remaining 64.7s, peak mem 6823MB, user 316.2s, sys 7.6s, output queue size 203
progress 20% @chr3:47000001, elapsed 14.5s, est remaining 58.0s, peak mem 6923MB, user 413.0s, sys 10.4s, output queue size 174
progress 25% @chr4:124000001, elapsed 17.2s, est remaining 51.5s, peak mem 7207MB, user 496.8s, sys 11.1s, output queue size 302
progress 30% @chr5:38000001, elapsed 19.3s, est remaining 45.1s, peak mem 7453MB, user 558.9s, sys 11.7s, output queue size 464
progress 35% @chr6:44000001, elapsed 22.5s, est remaining 41.8s, peak mem 7578MB, user 645.9s, sys 12.8s, output queue size 625
progress 40% @chr7:66000001, elapsed 26.1s, est remaining 39.2s, peak mem 8133MB, user 735.8s, sys 13.4s, output queue size 786
progress 45% @chr8:82000001, elapsed 30.2s, est remaining 37.0s, peak mem 8429MB, user 887.1s, sys 14.8s, output queue size 204
progress 50% @chr9:102000001, elapsed 33.5s, est remaining 33.5s, peak mem 8655MB, user 963.9s, sys 15.4s, output queue size 366
progress 55% @chr10:118000001, elapsed 37.2s, est remaining 30.5s, peak mem 8658MB, user 1095.9s, sys 16.5s, output queue size 348
progress 60% @chr12:5000001, elapsed 40.9s, est remaining 27.2s, peak mem 8658MB, user 1211.2s, sys 17.3s, output queue size 510
progress 65% @chr13:24000001, elapsed 44.7s, est remaining 24.1s, peak mem 8658MB, user 1309.7s, sys 18.0s, output queue size 672
progress 70% @chr14:71000001, elapsed 47.0s, est remaining 20.2s, peak mem 8675MB, user 1374.4s, sys 18.4s, output queue size 833
progress 75% @chr16:42000001, elapsed 51.2s, est remaining 17.1s, peak mem 8734MB, user 1517.6s, sys 19.1s, output queue size 461
progress 80% @chr18:25000001, elapsed 57.1s, est remaining 14.3s, peak mem 8848MB, user 1680.0s, sys 20.2s, output queue size 623
progress 85% @chr20:48000001, elapsed 62.5s, est remaining 11.0s, peak mem 8862MB, user 1851.3s, sys 21.2s, output queue size 785
progress 90% @chrX:42000001, elapsed 65.5s, est remaining 7.3s, peak mem 8899MB, user 1964.2s, sys 22.0s, output queue size 513
progress 95% @chrY:55000001, elapsed 67.6s, est remaining 3.6s, peak mem 9120MB, user 2017.8s, sys 22.6s, output queue size 675
progress 100% @chr22:23000001, elapsed 74.1s, est remaining 0.0s, peak mem 9120MB, user 2113.6s, sys 23.3s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 66871250911
reads: 1299975145
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1033.038 user 20.499 sys 1055.813 real
done: 1 calls 0.015 user 0.007 sys 0.028 real
exec_no_coor: 1 calls 0.000 user 0.012 sys 0.018 real
execute: 1 calls 0.002 user 0.001 sys 74.076 real
idle: 204 calls 0.147 user 0.001 sys 188.525 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 9563701248 mem 2114.612 user 23.604 sys 75.404 real