Work Directory

Task
DAQ:BAM_POSTDEDUP_QC:SEQTOOL (659_Lx-T1-TDNA-1_A23MHWWLT4_1)
Attempt
1
S3 Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/4b00ec874028e170f2610139bcc7e8

Files (72)

Name Size Modified
.command.begin 6 bytes Jun 05, 2026 3:35 PM
.command.err 887 bytes Jun 05, 2026 3:36 PM
.command.log 20.9 KB Jun 05, 2026 3:36 PM
.command.out 17.5 KB Jun 05, 2026 3:36 PM
.command.run 17.3 KB Jun 05, 2026 3:35 PM
.command.sh 1.6 KB Jun 05, 2026 3:35 PM
.command.trace 269 bytes Jun 05, 2026 3:36 PM
.command.yaml 3.5 KB Jun 05, 2026 3:35 PM
.exitcode 1 byte Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md.depth.gz 85.6 MB Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md.depth.gz.tbi 575.1 KB Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md.depth.png 17.2 KB Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md.depth_hist.tsv 9.1 KB Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md.noise_summary.tsv 125 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/contamination.tsv 144 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/depth_stats.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv 411 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/depth_stats.altera_v3_targets_coding_postQC_hg38.bed.tsv 416 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/depth_stats.altera_v3_targets_noncoding_postQC_hg38.bed.tsv 417 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/depth_stats.altera_v3_targets_postQC_hg38.bed.tsv 417 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/depth_stats.foresight_clarity_targets_hg38.bed.tsv 416 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/depth_stats.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv 418 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/depth_stats.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv 418 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/depth_stats.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv 418 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/fragsize.fragsize.png 25.9 KB Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/fragsize.fragsize.table 306 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/full_bed.bed 4.6 MB Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias.FINAL_hotspot_list_07302025_hg38_sorted.bed.png 43.6 KB Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias.altera_v3_targets_coding_postQC_hg38.bed.png 49.1 KB Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias.altera_v3_targets_noncoding_postQC_hg38.bed.png 54.0 KB Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias.altera_v3_targets_postQC_hg38.bed.png 48.5 KB Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias.foresight_clarity_targets_hg38.bed.png 45.4 KB Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.png 53.4 KB Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.png 52.0 KB Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.png 50.3 KB Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias_qc.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv 463 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias_qc.altera_v3_targets_coding_postQC_hg38.bed.tsv 538 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias_qc.altera_v3_targets_noncoding_postQC_hg38.bed.tsv 548 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias_qc.altera_v3_targets_postQC_hg38.bed.tsv 543 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias_qc.foresight_clarity_targets_hg38.bed.tsv 513 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias_qc.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv 543 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias_qc.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv 543 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias_qc.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv 533 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/qc_complete.txt 28 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/read_qc.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv 579 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/read_qc.altera_v3_targets_coding_postQC_hg38.bed.tsv 583 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/read_qc.altera_v3_targets_noncoding_postQC_hg38.bed.tsv 584 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/read_qc.altera_v3_targets_postQC_hg38.bed.tsv 584 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/read_qc.foresight_clarity_targets_hg38.bed.tsv 583 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/read_qc.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv 584 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/read_qc.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv 584 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/read_qc.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv 584 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/reads_per_target.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv 1.9 KB Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/reads_per_target.altera_v3_targets_coding_postQC_hg38.bed.tsv 238.9 KB Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/reads_per_target.altera_v3_targets_noncoding_postQC_hg38.bed.tsv 264.8 KB Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/reads_per_target.altera_v3_targets_postQC_hg38.bed.tsv 338.7 KB Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/reads_per_target.foresight_clarity_targets_hg38.bed.tsv 51.7 KB Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/reads_per_target.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv 5.0 MB Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/reads_per_target.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv 4.8 MB Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/reads_per_target.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv 6.5 MB Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/saturation_plot.png 44.6 KB Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/saturation_qc.tsv 74 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/total_base_counts.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv 68 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/total_base_counts.altera_v3_targets_coding_postQC_hg38.bed.tsv 70 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/total_base_counts.altera_v3_targets_noncoding_postQC_hg38.bed.tsv 73 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/total_base_counts.altera_v3_targets_postQC_hg38.bed.tsv 63 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/total_base_counts.foresight_clarity_targets_hg38.bed.tsv 63 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/total_base_counts.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv 127 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/total_base_counts.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv 107 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1.md/total_base_counts.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv 155 bytes Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1_basic_stats.tsv 1.3 KB Jun 05, 2026 3:36 PM
659_Lx-T1-TDNA-1_A23MHWWLT4_1/659_Lx-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats.tsv 5.0 KB Jun 05, 2026 3:36 PM
versions.yml 49 bytes Jun 05, 2026 3:36 PM