.command.err - Workdir - DAQ:BAM_POSTDEDUP_QC:SEQTOOL (659_Lx-T1-TDNA-1_A23MHWWLT4_1)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/4b00ec874028e170f2610139bcc7e8/.command.err
Size: 887 bytes
Task: DAQ:BAM_POSTDEDUP_QC:SEQTOOL (659_Lx-T1-TDNA-1_A23MHWWLT4_1)
Attempt

Content

[mpileup] 1 samples in 1 input files
loading BEDs...
/opt/conda/lib/python3.9/site-packages/pyranges/__init__.py:8: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.
  import pkg_resources
/opt/conda/lib/python3.9/site-packages/pyranges/__init__.py:8: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.
  import pkg_resources

0it [00:00, ?it/s]
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done loading BEDs.
[W::hts_idx_load3] The index file is older than the data file: Homo_sapiens_assembly38.dbsnp138.vcf.gz.tbi