Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/b4ea659cd26001b388743686e9f97d/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/87f5f2c5f87d806b00a0a853358d4c/1136_7GC-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/b4ea659cd26001b388743686e9f97d/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_noncoding_postQC_hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/87f5f2c5f87d806b00a0a853358d4c/1136_7GC-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_7GC-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_noncoding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_7GC-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:178000001, elapsed 5.7s, est remaining 108.5s, peak mem 4036MB, user 137.2s, sys 3.8s, output queue size 146
progress 10% @chr2:94000001, elapsed 10.1s, est remaining 90.9s, peak mem 4930MB, user 273.1s, sys 5.5s, output queue size 117
progress 15% @chr2:197000001, elapsed 14.9s, est remaining 84.3s, peak mem 6562MB, user 422.2s, sys 7.9s, output queue size 122
progress 20% @chr3:155000001, elapsed 19.2s, est remaining 76.8s, peak mem 6622MB, user 546.6s, sys 8.9s, output queue size 283
progress 25% @chr4:124000001, elapsed 22.8s, est remaining 68.4s, peak mem 6681MB, user 667.5s, sys 9.9s, output queue size 302
progress 30% @chr5:100000001, elapsed 25.8s, est remaining 60.1s, peak mem 6739MB, user 748.1s, sys 10.6s, output queue size 464
progress 35% @chr6:70000001, elapsed 30.0s, est remaining 55.8s, peak mem 7060MB, user 866.1s, sys 11.5s, output queue size 625
progress 40% @chr7:48000001, elapsed 34.9s, est remaining 52.4s, peak mem 7920MB, user 994.0s, sys 12.3s, output queue size 786
progress 45% @chr8:74000001, elapsed 40.1s, est remaining 49.1s, peak mem 7950MB, user 1176.1s, sys 13.8s, output queue size 356
progress 50% @chr9:37000001, elapsed 44.5s, est remaining 44.5s, peak mem 8091MB, user 1299.4s, sys 14.6s, output queue size 366
progress 55% @chr10:104000001, elapsed 49.6s, est remaining 40.6s, peak mem 8144MB, user 1448.2s, sys 15.4s, output queue size 527
progress 60% @chr11:130000001, elapsed 54.5s, est remaining 36.4s, peak mem 8144MB, user 1621.3s, sys 16.3s, output queue size 510
progress 65% @chr13:33000001, elapsed 59.7s, est remaining 32.2s, peak mem 8219MB, user 1752.0s, sys 16.9s, output queue size 672
progress 70% @chr14:79000001, elapsed 62.9s, est remaining 27.0s, peak mem 8222MB, user 1850.4s, sys 17.5s, output queue size 833
progress 75% @chr16:38000001, elapsed 68.6s, est remaining 22.9s, peak mem 8269MB, user 2018.9s, sys 18.3s, output queue size 995
progress 80% @chr18:13000001, elapsed 76.3s, est remaining 19.1s, peak mem 8413MB, user 2251.3s, sys 19.6s, output queue size 623
progress 85% @chr17:40000001, elapsed 83.0s, est remaining 14.7s, peak mem 8413MB, user 2478.8s, sys 20.8s, output queue size 785
progress 90% @chrX:24000001, elapsed 87.5s, est remaining 9.7s, peak mem 8478MB, user 2606.5s, sys 21.5s, output queue size 947
progress 95% @chrY:55000001, elapsed 90.3s, est remaining 4.8s, peak mem 8535MB, user 2675.4s, sys 22.0s, output queue size 1109
progress 100% @chr15:88000001, elapsed 98.8s, est remaining 0.0s, peak mem 8535MB, user 2830.5s, sys 22.9s, output queue size 4099
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 74522276073
reads: 1535620780
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1334.762 user 20.078 sys 1356.887 real
done: 1 calls 0.014 user 0.019 sys 0.038 real
exec_no_coor: 1 calls 0.007 user 0.023 sys 0.060 real
execute: 1 calls 0.009 user 0.000 sys 98.829 real
idle: 277 calls 0.154 user 0.001 sys 238.914 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 8950358016 mem 2831.713 user 22.988 sys 100.141 real