cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.md.bam --read_filter QualCalFilter,table=1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.table.post --algo ReadWriter 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:153000001, elapsed 13.6s, est remaining 258.3s, peak mem 3711MB, user 347.2s, sys 5.3s, output queue size 42
progress 10% @chr2:81000001, elapsed 24.2s, est remaining 218.0s, peak mem 4375MB, user 688.9s, sys 7.2s, output queue size 48
progress 15% @chr2:201000001, elapsed 35.6s, est remaining 201.8s, peak mem 4420MB, user 1041.0s, sys 9.3s, output queue size 57
progress 20% @chr3:121000001, elapsed 47.6s, est remaining 190.4s, peak mem 4420MB, user 1406.7s, sys 10.7s, output queue size 141
progress 25% @chr4:120000001, elapsed 57.9s, est remaining 173.6s, peak mem 4480MB, user 1734.7s, sys 12.5s, output queue size 16
progress 30% @chr5:79000001, elapsed 66.8s, est remaining 155.9s, peak mem 4480MB, user 2009.5s, sys 13.8s, output queue size 19
progress 35% @chr6:92000001, elapsed 79.0s, est remaining 146.7s, peak mem 4576MB, user 2333.1s, sys 15.3s, output queue size 70
progress 40% @chr7:57000001, elapsed 89.9s, est remaining 134.8s, peak mem 4701MB, user 2682.5s, sys 16.9s, output queue size 195
progress 45% @chr8:71000001, elapsed 102.2s, est remaining 124.9s, peak mem 4774MB, user 3063.7s, sys 18.6s, output queue size 77
progress 50% @chr9:78000001, elapsed 112.0s, est remaining 112.0s, peak mem 4813MB, user 3364.1s, sys 19.9s, output queue size 187
progress 55% @chr10:108000001, elapsed 123.6s, est remaining 101.1s, peak mem 4823MB, user 3728.0s, sys 21.5s, output queue size 98
progress 60% @chr11:129000001, elapsed 135.6s, est remaining 90.4s, peak mem 4857MB, user 4096.7s, sys 22.8s, output queue size 59
progress 65% @chr13:23000001, elapsed 147.2s, est remaining 79.2s, peak mem 4946MB, user 4431.3s, sys 24.4s, output queue size 138
progress 70% @chr14:82000001, elapsed 156.0s, est remaining 66.9s, peak mem 4958MB, user 4710.5s, sys 25.6s, output queue size 299
progress 75% @chr16:38000001, elapsed 167.1s, est remaining 55.7s, peak mem 5065MB, user 5042.6s, sys 27.2s, output queue size 118
progress 80% @chr17:63000001, elapsed 182.2s, est remaining 45.5s, peak mem 5157MB, user 5494.4s, sys 28.9s, output queue size 77
progress 85% @chr20:21000001, elapsed 196.6s, est remaining 34.7s, peak mem 5282MB, user 5959.3s, sys 31.0s, output queue size 36
progress 90% @chrX:25000001, elapsed 206.6s, est remaining 23.0s, peak mem 5282MB, user 6267.3s, sys 32.3s, output queue size 52
progress 95% @chrY:53000001, elapsed 214.5s, est remaining 11.3s, peak mem 5282MB, user 6527.9s, sys 33.4s, output queue size 211
progress 100% @chrX:154000001, elapsed 218.7s, est remaining 0.0s, peak mem 5282MB, user 6642.6s, sys 34.4s, output queue size 3453
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 34425376535
output file size: 47324122350
reads: 539909111
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.012 real
ReadQualCal::delayed_init: 1 calls 0.007 user 0.001 sys 0.019 real
ReadQualCal::init: 1 calls 0.010 user 0.000 sys 0.006 real
advance: 3219322 calls 683.956 user 9.655 sys 717.730 real
done: 1 calls 0.457 user 0.496 sys 0.960 real
exec_no_coor: 1 calls 0.001 user 0.014 sys 0.030 real
execute: 1 calls 0.004 user 0.000 sys 218.904 real
fetch: 3219323 calls 21.394 user 0.549 sys 31.063 real
fetch_reads: 3219322 calls 69.673 user 0.404 sys 72.344 real
fetch_ref: 1876021 calls 5.233 user 1.433 sys 6.238 real
fetch_vcf: 1876021 calls 100.918 user 1.633 sys 105.369 real
idle: 2545 calls 0.546 user 0.015 sys 105.590 real
init: 1 calls 0.011 user 0.001 sys 0.025 real
update: 1924055 calls 1264.706 user 2.478 sys 1307.464 real
write: 3219323 calls 4544.865 user 14.370 sys 4553.405 real
overall: 5538680832 mem 6649.199 user 49.370 sys 221.256 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.table --after 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.table.post 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.040 user 0.000 sys 0.037 real
done: 1 calls 0.080 user 0.000 sys 0.074 real
idle: 61 calls 0.002 user 0.000 sys 31.320 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 86753280 mem 0.105 user 0.023 sys 1.054 real