Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/51b6fed12e8fc406e590cd0e552002/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/17f952c7b083c9b7afbbe37bd564e3/1136_86S-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_coding_postQC_hg38.bed
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/17f952c7b083c9b7afbbe37bd564e3/1136_86S-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/51b6fed12e8fc406e590cd0e552002/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_86S-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_coding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_86S-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:15000001, elapsed 4.6s, est remaining 88.1s, peak mem 3552MB, user 113.8s, sys 3.0s, output queue size 146
progress 10% @chr2:90000001, elapsed 8.4s, est remaining 75.2s, peak mem 4390MB, user 228.2s, sys 7.2s, output queue size 96
progress 15% @chr2:201000001, elapsed 12.7s, est remaining 71.9s, peak mem 6002MB, user 352.4s, sys 11.6s, output queue size 122
progress 20% @chr3:176000001, elapsed 16.2s, est remaining 64.9s, peak mem 6254MB, user 460.8s, sys 12.9s, output queue size 174
progress 25% @chr4:135000001, elapsed 19.4s, est remaining 58.3s, peak mem 6384MB, user 563.4s, sys 13.8s, output queue size 302
progress 30% @chr5:75000001, elapsed 22.0s, est remaining 51.3s, peak mem 6653MB, user 639.3s, sys 14.5s, output queue size 464
progress 35% @chr5:150000001, elapsed 25.6s, est remaining 47.6s, peak mem 7050MB, user 740.3s, sys 15.2s, output queue size 625
progress 40% @chr7:66000001, elapsed 29.9s, est remaining 44.8s, peak mem 7534MB, user 853.2s, sys 16.0s, output queue size 786
progress 45% @chr8:70000001, elapsed 34.3s, est remaining 42.0s, peak mem 7534MB, user 1005.8s, sys 17.2s, output queue size 204
progress 50% @chr9:88000001, elapsed 38.0s, est remaining 38.0s, peak mem 7541MB, user 1103.2s, sys 17.8s, output queue size 366
progress 55% @chr10:115000001, elapsed 42.4s, est remaining 34.7s, peak mem 7731MB, user 1234.8s, sys 18.8s, output queue size 527
progress 60% @chr8:38000001, elapsed 46.7s, est remaining 31.1s, peak mem 7731MB, user 1364.7s, sys 19.7s, output queue size 689
progress 65% @chr13:23000001, elapsed 51.3s, est remaining 27.6s, peak mem 7875MB, user 1500.0s, sys 20.7s, output queue size 672
progress 70% @chr14:79000001, elapsed 54.4s, est remaining 23.3s, peak mem 7879MB, user 1594.8s, sys 21.3s, output queue size 833
progress 75% @chr16:42000001, elapsed 59.3s, est remaining 19.8s, peak mem 7969MB, user 1764.3s, sys 22.4s, output queue size 461
progress 80% @chr17:78000001, elapsed 65.7s, est remaining 16.4s, peak mem 8094MB, user 1933.5s, sys 23.7s, output queue size 623
progress 85% @chr20:3000001, elapsed 70.9s, est remaining 12.5s, peak mem 8094MB, user 2107.8s, sys 24.8s, output queue size 785
progress 90% @chrX:42000001, elapsed 74.4s, est remaining 8.3s, peak mem 8094MB, user 2230.0s, sys 25.5s, output queue size 513
progress 95% @chrY:52000001, elapsed 76.4s, est remaining 4.0s, peak mem 8094MB, user 2290.0s, sys 25.9s, output queue size 675
progress 100% @chr22:23000001, elapsed 82.7s, est remaining 0.0s, peak mem 8137MB, user 2385.2s, sys 26.6s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 69197258666
reads: 1424902378
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1107.556 user 23.399 sys 1131.393 real
done: 1 calls 0.007 user 0.018 sys 0.031 real
exec_no_coor: 1 calls 0.000 user 0.016 sys 0.026 real
execute: 1 calls 0.001 user 0.010 sys 82.685 real
idle: 213 calls 0.175 user 0.001 sys 180.286 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 8532684800 mem 2386.226 user 26.902 sys 83.949 real