File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/a4268c70a03545b406f059fa7ecbd1/.command.err
Size
3.7 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_FRC-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/foresight_clarity_targets_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_FRC-T1-TDNA-1_A23MHWWLT4_1_foresight_clarity_targets_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:177000001, elapsed 4.5s, est remaining 86.2s, peak mem 3440MB, user 104.1s, sys 3.3s, output queue size 146
progress 10% @chr2:94000001, elapsed 8.1s, est remaining 72.8s, peak mem 4597MB, user 217.9s, sys 6.5s, output queue size 117
progress 15% @chr2:237000001, elapsed 11.9s, est remaining 67.3s, peak mem 6589MB, user 330.7s, sys 8.9s, output queue size 203
progress 20% @chr3:174000001, elapsed 15.3s, est remaining 61.2s, peak mem 6633MB, user 438.4s, sys 11.6s, output queue size 141
progress 25% @chr4:129000001, elapsed 18.2s, est remaining 54.6s, peak mem 6759MB, user 525.0s, sys 12.5s, output queue size 302
progress 30% @chr5:1, elapsed 20.6s, est remaining 48.0s, peak mem 6796MB, user 599.6s, sys 13.2s, output queue size 464
progress 35% @chr6:56000001, elapsed 24.0s, est remaining 44.6s, peak mem 7072MB, user 689.3s, sys 13.9s, output queue size 625
progress 40% @chr7:64000001, elapsed 27.9s, est remaining 41.8s, peak mem 7392MB, user 801.8s, sys 14.9s, output queue size 786
progress 45% @chr8:54000001, elapsed 32.0s, est remaining 39.1s, peak mem 7542MB, user 939.4s, sys 15.8s, output queue size 204
progress 50% @chr9:37000001, elapsed 35.9s, est remaining 35.9s, peak mem 8241MB, user 1032.3s, sys 16.6s, output queue size 366
progress 55% @chr10:118000001, elapsed 40.2s, est remaining 32.9s, peak mem 8241MB, user 1168.6s, sys 17.8s, output queue size 527
progress 60% @chr12:1000001, elapsed 44.5s, est remaining 29.6s, peak mem 8241MB, user 1314.4s, sys 18.9s, output queue size 510
progress 65% @chr13:23000001, elapsed 48.4s, est remaining 26.0s, peak mem 8241MB, user 1435.2s, sys 19.9s, output queue size 474
progress 70% @chr14:69000001, elapsed 50.9s, est remaining 21.8s, peak mem 8241MB, user 1507.3s, sys 20.4s, output queue size 635
progress 75% @chr16:42000001, elapsed 55.1s, est remaining 18.4s, peak mem 8241MB, user 1643.1s, sys 21.5s, output queue size 461
progress 80% @chr17:65000001, elapsed 61.8s, est remaining 15.4s, peak mem 8508MB, user 1808.0s, sys 22.8s, output queue size 623
progress 85% @chr19:42000001, elapsed 66.7s, est remaining 11.8s, peak mem 8508MB, user 1982.1s, sys 24.3s, output queue size 785
progress 90% @chr22:39000001, elapsed 70.5s, est remaining 7.8s, peak mem 8508MB, user 2093.4s, sys 25.0s, output queue size 947
progress 95% @chrY:55000001, elapsed 72.9s, est remaining 3.8s, peak mem 8508MB, user 2179.8s, sys 25.7s, output queue size 675
progress 100% @chr22:23000001, elapsed 79.1s, est remaining 0.0s, peak mem 8508MB, user 2277.4s, sys 26.3s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 72638040988
reads: 1429869427
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1134.889 user 22.840 sys 1159.413 real
done: 1 calls 0.003 user 0.000 sys 0.009 real
exec_no_coor: 1 calls 0.006 user 0.006 sys 0.020 real
execute: 1 calls 0.001 user 0.000 sys 79.117 real
idle: 200 calls 0.136 user 0.001 sys 177.963 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 8921980928 mem 2278.303 user 26.525 sys 80.388 real