Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/7548cc0f5d884e21b01861835869a7/1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/b2a5f36a5a46d3207545cbefbb0877/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/7548cc0f5d884e21b01861835869a7/1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/b2a5f36a5a46d3207545cbefbb0877/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_noncoding_postQC_hg38.bed
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_noncoding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:152000001, elapsed 1.9s, est remaining 35.6s, peak mem 938MB, user 48.0s, sys 1.1s, output queue size 42
progress 10% @chr2:27000001, elapsed 3.4s, est remaining 30.3s, peak mem 1413MB, user 95.2s, sys 1.5s, output queue size 96
progress 15% @chr2:230000001, elapsed 5.0s, est remaining 28.2s, peak mem 1705MB, user 145.3s, sys 2.4s, output queue size 57
progress 20% @chr3:161000001, elapsed 6.6s, est remaining 26.2s, peak mem 1705MB, user 193.1s, sys 2.8s, output queue size 141
progress 25% @chr4:126000001, elapsed 7.9s, est remaining 23.8s, peak mem 1705MB, user 235.1s, sys 3.3s, output queue size 302
progress 30% @chr5:79000001, elapsed 9.1s, est remaining 21.1s, peak mem 1705MB, user 272.8s, sys 3.6s, output queue size 19
progress 35% @chr6:76000001, elapsed 10.6s, est remaining 19.8s, peak mem 1812MB, user 314.8s, sys 4.2s, output queue size 70
progress 40% @chr7:41000001, elapsed 12.2s, est remaining 18.2s, peak mem 1933MB, user 364.8s, sys 4.8s, output queue size 194
progress 45% @chr8:61000001, elapsed 13.8s, est remaining 16.9s, peak mem 2004MB, user 413.0s, sys 5.2s, output queue size 204
progress 50% @chr9:89000001, elapsed 15.2s, est remaining 15.2s, peak mem 2037MB, user 451.8s, sys 5.5s, output queue size 187
progress 55% @chr10:104000001, elapsed 16.8s, est remaining 13.8s, peak mem 2101MB, user 501.9s, sys 5.9s, output queue size 348
progress 60% @chr11:129000001, elapsed 18.4s, est remaining 12.3s, peak mem 2170MB, user 556.4s, sys 6.5s, output queue size 59
progress 65% @chr13:30000001, elapsed 20.0s, est remaining 10.8s, peak mem 2212MB, user 602.5s, sys 6.9s, output queue size 138
progress 70% @chr14:84000001, elapsed 21.2s, est remaining 9.1s, peak mem 2288MB, user 640.7s, sys 7.2s, output queue size 299
progress 75% @chr16:42000001, elapsed 22.7s, est remaining 7.6s, peak mem 2288MB, user 680.5s, sys 7.6s, output queue size 461
progress 80% @chr18:10000001, elapsed 25.0s, est remaining 6.2s, peak mem 2352MB, user 751.0s, sys 8.2s, output queue size 86
progress 85% @chr20:18000001, elapsed 27.0s, est remaining 4.8s, peak mem 2515MB, user 820.2s, sys 8.6s, output queue size 77
progress 90% @chrX:34000001, elapsed 28.4s, est remaining 3.2s, peak mem 2515MB, user 861.6s, sys 9.0s, output queue size 78
progress 95% @chrY:53000001, elapsed 29.5s, est remaining 1.6s, peak mem 2515MB, user 897.0s, sys 9.5s, output queue size 211
progress 100% @chr22:23000001, elapsed 30.3s, est remaining 0.0s, peak mem 2515MB, user 913.6s, sys 9.7s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 34425376535
reads: 539909111
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 521.479 user 8.264 sys 530.606 real
done: 1 calls 0.017 user 0.009 sys 0.027 real
exec_no_coor: 1 calls 0.000 user 0.006 sys 0.010 real
execute: 1 calls 0.002 user 0.001 sys 30.323 real
idle: 62 calls 0.148 user 0.000 sys 46.171 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 2638184448 mem 914.694 user 9.888 sys 31.537 real