File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/cffcd52c1c7a712aa0eaa4d3c0a6fd/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_5L2-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_noncoding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_5L2-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:151000001, elapsed 3.3s, est remaining 62.9s, peak mem 3020MB, user 80.2s, sys 2.2s, output queue size 146
progress 10% @chr1:226000001, elapsed 6.1s, est remaining 55.1s, peak mem 3678MB, user 166.3s, sys 4.0s, output queue size 117
progress 15% @chr3:13000001, elapsed 9.3s, est remaining 52.7s, peak mem 5666MB, user 251.6s, sys 7.4s, output queue size 203
progress 20% @chr3:178000001, elapsed 11.8s, est remaining 47.1s, peak mem 6182MB, user 328.9s, sys 10.5s, output queue size 283
progress 25% @chr4:124000001, elapsed 13.8s, est remaining 41.4s, peak mem 6194MB, user 396.9s, sys 11.5s, output queue size 302
progress 30% @chr5:107000001, elapsed 15.5s, est remaining 36.1s, peak mem 6267MB, user 445.9s, sys 12.0s, output queue size 464
progress 35% @chr5:150000001, elapsed 17.8s, est remaining 33.0s, peak mem 6534MB, user 513.0s, sys 12.7s, output queue size 625
progress 40% @chr7:66000001, elapsed 20.7s, est remaining 31.1s, peak mem 6977MB, user 583.5s, sys 13.3s, output queue size 786
progress 45% @chr8:70000001, elapsed 23.8s, est remaining 29.1s, peak mem 7187MB, user 682.7s, sys 14.4s, output queue size 948
progress 50% @chr9:102000001, elapsed 26.4s, est remaining 26.4s, peak mem 7400MB, user 744.7s, sys 14.9s, output queue size 1110
progress 55% @chr10:104000001, elapsed 29.6s, est remaining 24.2s, peak mem 7487MB, user 850.6s, sys 15.7s, output queue size 527
progress 60% @chr12:1000001, elapsed 32.7s, est remaining 21.8s, peak mem 7487MB, user 949.1s, sys 16.3s, output queue size 689
progress 65% @chr12:113000001, elapsed 36.1s, est remaining 19.4s, peak mem 7531MB, user 1036.6s, sys 17.0s, output queue size 851
progress 70% @chr14:71000001, elapsed 38.1s, est remaining 16.3s, peak mem 7606MB, user 1105.8s, sys 17.5s, output queue size 833
progress 75% @chr16:41000001, elapsed 41.6s, est remaining 13.9s, peak mem 7669MB, user 1198.0s, sys 18.3s, output queue size 995
progress 80% @chr18:29000001, elapsed 45.8s, est remaining 11.5s, peak mem 7687MB, user 1323.1s, sys 19.2s, output queue size 1157
progress 85% @chr20:23000001, elapsed 50.0s, est remaining 8.8s, peak mem 7733MB, user 1464.9s, sys 20.0s, output queue size 785
progress 90% @chrX:34000001, elapsed 52.4s, est remaining 5.8s, peak mem 7733MB, user 1555.6s, sys 20.7s, output queue size 947
progress 95% @chrY:52000001, elapsed 53.8s, est remaining 2.8s, peak mem 7733MB, user 1590.1s, sys 21.0s, output queue size 1109
progress 100% @chr15:88000001, elapsed 61.0s, est remaining 0.0s, peak mem 7733MB, user 1688.9s, sys 21.5s, output queue size 4099
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 52593107263
reads: 1002659546
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 803.762 user 19.214 sys 822.894 real
done: 1 calls 0.026 user 0.000 sys 0.027 real
exec_no_coor: 1 calls 0.008 user 0.000 sys 0.011 real
execute: 1 calls 0.006 user 0.002 sys 61.046 real
idle: 241 calls 0.147 user 0.007 sys 210.916 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 8109666304 mem 1689.915 user 21.749 sys 62.297 real